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Legacy flatfile-incompatible PDB entries
8SJU
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BU of 8sju by Molmil
[4T17] Self-assembling right-handed four-turn tensegrity triangle with 17 interjunction base pairs and R3 symmetry
Descriptor: DNA (25-MER), DNA (5'-D(*GP*AP*AP*AP*AP*AP*CP*AP*CP*TP*GP*CP*CP*TP*GP*AP*AP*TP*AP*CP*CP*GP*CP*A)-3'), DNA (5'-D(P*GP*CP*GP*GP*TP*AP*TP*TP*CP*AP*CP*CP*AP*CP*GP*AP*T)-3'), ...
Authors:Janowski, J, Vecchioni, S, Sha, R, Ohayon, Y.P.
Deposit date:2023-04-18
Release date:2024-04-24
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (7.14 Å)
Cite:Engineering tertiary chirality in helical biopolymers.
Proc.Natl.Acad.Sci.USA, 121, 2024
8SJV
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BU of 8sjv by Molmil
[4T24] Self-assembling left-handed tensegrity triangle with 24 interjunction base pairs and R3 symmetry
Descriptor: DNA (5'-D(P*CP*TP*TP*GP*TP*AP*GP*TP*CP*TP*CP*AP*CP*CP*AP*CP*TP*GP*TP*GP*AP*TP*GP*T)-3'), DNA (5'-D(P*GP*AP*AP*CP*AP*CP*TP*CP*CP*TP*GP*AP*GP*AP*CP*TP*AP*CP*AP*A)-3'), DNA (5'-D(P*GP*AP*CP*AP*TP*CP*AP*CP*AP*GP*TP*GP*GP*AP*CP*TP*AP*CP*AP*AP*G)-3'), ...
Authors:Janowski, J, Vecchioni, S, Sha, R, Ohayon, Y.P.
Deposit date:2023-04-18
Release date:2024-04-24
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (8.59 Å)
Cite:Engineering tertiary chirality in helical biopolymers.
Proc.Natl.Acad.Sci.USA, 121, 2024
8SKU
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BU of 8sku by Molmil
Structure of human SIgA1 in complex with human CD89 (FcaR1)
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Immunoglobulin J chain, ...
Authors:Liu, Q, Stadtmueller, B.M.
Deposit date:2023-04-20
Release date:2023-10-25
Last modified:2023-11-08
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:SIgA structures bound to Streptococcus pyogenes M4 and human CD89 provide insights into host-pathogen interactions.
Nat Commun, 14, 2023
8SL0
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BU of 8sl0 by Molmil
Structure of a bacterial gasdermin slinky-like oligomer
Descriptor: Gasdermin bGSDM
Authors:Johnson, A.G, Mayer, M.L, Kranzusch, P.J.
Deposit date:2023-04-20
Release date:2023-05-17
Last modified:2024-05-01
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Structure and assembly of a bacterial gasdermin pore.
Nature, 628, 2024
8SNB
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BU of 8snb by Molmil
atomic model of sea urchin sperm doublet microtubule (48-nm periodicity)
Descriptor: ATP6V1FNB, C20Orf85, C4orf45, ...
Authors:Zeng, J, Zhang, R.
Deposit date:2023-04-26
Release date:2023-06-28
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Structural specializations of the sperm tail.
Cell, 2023
8SNP
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BU of 8snp by Molmil
Crystal structure of mouse Netrin-1 in complex with samarium ions
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Heide, F, Legare, S, Stetefeld, J.
Deposit date:2023-04-27
Release date:2024-02-07
Method:X-RAY DIFFRACTION (3.4 Å)
Cite:Investigating the structural and functional roles of calcium binding in Netrin-1
To Be Published
8SPR
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BU of 8spr by Molmil
The cryo-EM structure of the EcBAM/EspP(beta1-12) complex
Descriptor: Outer membrane protein assembly factor BamA, Outer membrane protein assembly factor BamB, Outer membrane protein assembly factor BamC, ...
Authors:Wu, R, Noinaj, N.
Deposit date:2023-05-03
Release date:2024-05-08
Method:ELECTRON MICROSCOPY (3.9 Å)
Cite:BAM orchestrates OMP biogenesis using a beta-templating mechanism
To Be Published
8SQB
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BU of 8sqb by Molmil
The cryo-EM structure of the EcBAM/EspP(beta7-12) complex
Descriptor: Maltodextrin-binding protein,EspP(b7-12), Outer membrane protein assembly factor BamA, Outer membrane protein assembly factor BamB, ...
Authors:Wu, R, Noinaj, N.
Deposit date:2023-05-04
Release date:2024-05-08
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:BAM orchestrates OMP biogenesis using a beta-templating mechanism
To Be Published
8SU9
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BU of 8su9 by Molmil
E. coli SIR2-HerA complex (hexamer HerA bound with dodecamer Sir2)
Descriptor: ADENOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, Nucleoside triphosphate hydrolase, ...
Authors:Shen, Z.F, Lin, Q.P, Fu, T.M.
Deposit date:2023-05-11
Release date:2024-03-27
Method:ELECTRON MICROSCOPY (2.83 Å)
Cite:Assembly-mediated activation of the SIR2-HerA supramolecular complex for anti-phage defense.
Mol.Cell, 83, 2023
8SUB
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BU of 8sub by Molmil
E. coli SIR2-HerA complex (dodecamer SIR2 pentamer HerA)
Descriptor: ADENOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, Nucleoside triphosphate hydrolase, ...
Authors:Shen, Z.F, Lin, Q.P, Fu, T.M.
Deposit date:2023-05-11
Release date:2023-12-27
Last modified:2024-03-27
Method:ELECTRON MICROSCOPY (2.89 Å)
Cite:Assembly-mediated activation of the SIR2-HerA supramolecular complex for anti-phage defense.
Mol.Cell, 83, 2023
8SUG
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BU of 8sug by Molmil
Cryo-EM structure of the wild type P. aeruginosa flagellar filament
Descriptor: B-type flagellin
Authors:Kreutzberger, M.A, Nedeljkovic, M, Egelman, E.H, Sundberg, E.J.
Deposit date:2023-05-12
Release date:2023-06-14
Last modified:2024-06-19
Method:ELECTRON MICROSCOPY (4.2 Å)
Cite:An unbroken network of interactions connecting flagellin domains is required for motility in viscous environments.
Plos Pathog., 19, 2023
8SUW
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BU of 8suw by Molmil
E. coli SIR2-HerA complex (dodecamer SIR2 bound 4 protomers of HerA)
Descriptor: ADENOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, Nucleoside triphosphate hydrolase, ...
Authors:Shen, Z.F, Lin, Q.P, Fu, T.M.
Deposit date:2023-05-13
Release date:2024-03-27
Method:ELECTRON MICROSCOPY (3.15 Å)
Cite:Assembly-mediated activation of the SIR2-HerA supramolecular complex for anti-phage defense.
Mol.Cell, 83, 2023
8SW4
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BU of 8sw4 by Molmil
BG505 GT1.1 SOSIP in complex with NHP Fabs 21N13, 21M20 and RM20A3
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 21M20 heavy chain variable region, ...
Authors:Ozorowski, G, Torres, J.L, Zhang, S, Ward, A.B.
Deposit date:2023-05-17
Release date:2024-05-29
Method:ELECTRON MICROSCOPY (2.85 Å)
Cite:Neutralizing antibodies induced in non-human primates by germline targeting Env trimer
To Be Published
8SW8
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BU of 8sw8 by Molmil
Crystal Structure of HaloTag7 bound to JF669-HaloTag ligand
Descriptor: 1-[(4aM,10P)-7-(azetidin-1-yl)-10-[2-carboxy-3,4,6-trifluoro-5-({2-[2-(hexyloxy)ethoxy]ethyl}carbamoyl)phenyl]-5,5-dimethyldibenzo[b,e]silin-3(5H)-ylidene]azetidin-1-ium, CHLORIDE ION, Haloalkane dehalogenase
Authors:Farrants, H, Schreiter, E.R.
Deposit date:2023-05-17
Release date:2024-06-05
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:A modular chemigenetic calcium indicator for multiplexed in vivo functional imaging
To Be Published
8SWW
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BU of 8sww by Molmil
BG505 Boost2 SOSIP.664 in complex with NHP polyclonal antibody IF3
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, NHP polyclonal antibody IF3 Heavy Chain, ...
Authors:Pratap, P.P, Antansijevic, A, Ward, A.B.
Deposit date:2023-05-19
Release date:2024-05-22
Last modified:2024-07-24
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:Priming antibody responses to the fusion peptide in rhesus macaques.
Npj Vaccines, 9, 2024
8SWX
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BU of 8swx by Molmil
BG505 Boost2 SOSIP.664 in complex with NHP polyclonal antibody Base4
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Base4 Heavy Chain, ...
Authors:Pratap, P.P, Antansijevic, A, Ward, A.B.
Deposit date:2023-05-19
Release date:2024-05-22
Last modified:2024-07-24
Method:ELECTRON MICROSCOPY (3.9 Å)
Cite:Priming antibody responses to the fusion peptide in rhesus macaques.
Npj Vaccines, 9, 2024
8SXJ
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BU of 8sxj by Molmil
CH505 Disulfide Stapled SOSIP Bound to CH235.12 Fab
Descriptor: CH235.12 Heavy Chain, CH235.12 Light Chain, Envelope glycoprotein gp160, ...
Authors:Henderson, R.
Deposit date:2023-05-22
Release date:2024-02-14
Method:ELECTRON MICROSCOPY (4 Å)
Cite:Microsecond dynamics control the HIV-1 Envelope conformation.
Sci Adv, 10, 2024
8SXZ
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BU of 8sxz by Molmil
Cryo-EM of the GDP-bound human dynamin polymer assembled on the membrane in the super constricted state
Descriptor: Dynamin-1, GUANOSINE-5'-DIPHOSPHATE, MAGNESIUM ION
Authors:Jimah, J.R, Canagarajah, B.J, Hinshaw, J.E.
Deposit date:2023-05-24
Release date:2024-05-01
Last modified:2024-08-07
Method:ELECTRON MICROSCOPY (3.26 Å)
Cite:Cryo-EM structures of membrane-bound dynamin in a post-hydrolysis state primed for membrane fission.
Dev.Cell, 59, 2024
8SYL
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BU of 8syl by Molmil
Cryo-EM structure of the Escherichia coli 70S ribosome in complex with amikacin, mRNA, and A-, P-, and E-site tRNAs
Descriptor: (2S)-N-[(1R,2S,3S,4R,5S)-4-[(2R,3R,4S,5S,6R)-6-(aminomethyl)-3,4,5-tris(oxidanyl)oxan-2-yl]oxy-5-azanyl-2-[(2S,3R,4S,5S ,6R)-4-azanyl-6-(hydroxymethyl)-3,5-bis(oxidanyl)oxan-2-yl]oxy-3-oxidanyl-cyclohexyl]-4-azanyl-2-oxidanyl-butanamide, 16S Ribosomal RNA, 23S Ribosomal RNA, ...
Authors:Seely, S.M, Gagnon, M.G.
Deposit date:2023-05-25
Release date:2023-08-09
Last modified:2023-11-15
Method:ELECTRON MICROSCOPY (2.9 Å)
Cite:Molecular basis of the pleiotropic effects by the antibiotic amikacin on the ribosome.
Nat Commun, 14, 2023
8SZ4
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BU of 8sz4 by Molmil
Cryo-EM of the GDP-bound human dynamin polymer assembled on the membrane in the super constricted state showing the PH domain
Descriptor: Dynamin-1
Authors:Jimah, J.R, Canagarajah, B.J, Hinshaw, J.E.
Deposit date:2023-05-26
Release date:2024-05-01
Last modified:2024-08-07
Method:ELECTRON MICROSCOPY (2.86 Å)
Cite:Cryo-EM structures of membrane-bound dynamin in a post-hydrolysis state primed for membrane fission.
Dev.Cell, 59, 2024
8SZ7
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BU of 8sz7 by Molmil
Cryo-EM of the GDP-bound human dynamin polymer assembled on the membrane in the super constricted state showing the second PH domain
Descriptor: Dynamin-1
Authors:Jimah, J.R, Canagarajah, B.J, Hinshaw, J.E.
Deposit date:2023-05-27
Release date:2024-05-01
Last modified:2024-08-07
Method:ELECTRON MICROSCOPY (2.84 Å)
Cite:Cryo-EM structures of membrane-bound dynamin in a post-hydrolysis state primed for membrane fission.
Dev.Cell, 59, 2024
8SZ8
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BU of 8sz8 by Molmil
Cryo-EM of the GDP-bound human dynamin polymer assembled on the membrane in the super constricted state (full helix)
Descriptor: Dynamin-1, GUANOSINE-5'-DIPHOSPHATE, MAGNESIUM ION
Authors:Jimah, J.R, Canagarajah, B.J, Hinshaw, J.E.
Deposit date:2023-05-27
Release date:2024-05-01
Last modified:2024-08-07
Method:ELECTRON MICROSCOPY (3.55 Å)
Cite:Cryo-EM structures of membrane-bound dynamin in a post-hydrolysis state primed for membrane fission.
Dev.Cell, 59, 2024
8T0K
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BU of 8t0k by Molmil
Cryo-EM of the GDP-bound human dynamin (full-length) polymer assembled on the membrane in the super constricted state
Descriptor: Dynamin-1, GUANOSINE-5'-DIPHOSPHATE, MAGNESIUM ION
Authors:Jimah, J.R, Canagarajah, B.J, Hinshaw, J.E.
Deposit date:2023-06-01
Release date:2024-05-01
Last modified:2024-08-07
Method:ELECTRON MICROSCOPY (3.58 Å)
Cite:Cryo-EM structures of membrane-bound dynamin in a post-hydrolysis state primed for membrane fission.
Dev.Cell, 59, 2024
8T0R
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BU of 8t0r by Molmil
Cryo-EM of the GDP-bound human dynamin (full-length) polymer assembled on the membrane in the super constricted state (full helix)
Descriptor: Dynamin-1, GUANOSINE-5'-DIPHOSPHATE, MAGNESIUM ION
Authors:Jimah, J.R, Canagarajah, B.J, Hinshaw, J.E.
Deposit date:2023-06-01
Release date:2024-05-01
Last modified:2024-08-07
Method:ELECTRON MICROSCOPY (3.97 Å)
Cite:Cryo-EM structures of membrane-bound dynamin in a post-hydrolysis state primed for membrane fission.
Dev.Cell, 59, 2024
8T21
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BU of 8t21 by Molmil
Cryo-EM structure of mink variant Y453F trimeric spike protein
Descriptor: Spike glycoprotein
Authors:Ahn, H.M, Calderon, B, Fan, X, Gao, Y, Horgan, N, Zhou, B, Liang, B.
Deposit date:2023-06-05
Release date:2023-10-25
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:Structural basis of the American mink ACE2 binding by Y453F trimeric spike glycoproteins of SARS-CoV-2.
J Med Virol, 95, 2023

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數據於2024-08-07公開中

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