Legacy flatfile-incompatible PDB entries

8PW5	CS respirasome from murine liver Descriptor: 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE, 1,2-Distearoyl-sn-glycerophosphoethanolamine, 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE, ... Authors: Vercellino, I, Sazanov, L.A. Deposit date: 2023-07-19 Release date: 2024-04-24 Method: ELECTRON MICROSCOPY (3.6 Å) Cite: SCAF1 drives the compositional diversity of mammalian respirasomes. Nat.Struct.Mol.Biol., 2024
8PW6	C respirasome from murine liver Descriptor: 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE, 1,2-Distearoyl-sn-glycerophosphoethanolamine, 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE, ... Authors: Vercellino, I, Sazanov, L.A. Deposit date: 2023-07-19 Release date: 2024-04-24 Method: ELECTRON MICROSCOPY (3.3 Å) Cite: SCAF1 drives the compositional diversity of mammalian respirasomes. Nat.Struct.Mol.Biol., 2024
8PW7	A respirasome from murine liver Descriptor: 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE, 1,2-Distearoyl-sn-glycerophosphoethanolamine, 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE, ... Authors: Vercellino, I, Sazanov, L.A. Deposit date: 2023-07-19 Release date: 2024-04-24 Method: ELECTRON MICROSCOPY (3.5 Å) Cite: SCAF1 drives the compositional diversity of mammalian respirasomes. Nat.Struct.Mol.Biol., 2024
8PXA	N-TERMINAL BROMODOMAIN OF HUMAN BRD4 WITH (S)-5-(1-((1-(1-isopropylpiperidine-4-carbonyl)piperidin-3-yl)methyl)-1H-benzo[d]imidazol-2-yl)-1,3-dimethylpyridin-2(1H)-one Descriptor: 1,3-dimethyl-5-[1-[[(3~{S})-1-(1-propan-2-ylpiperidin-4-yl)carbonylpiperidin-3-yl]methyl]benzimidazol-2-yl]pyridin-2-one, Bromodomain-containing protein 4 Authors: Chung, C. Deposit date: 2023-07-22 Release date: 2023-10-18 Last modified: 2023-12-27 Method: X-RAY DIFFRACTION (1.3 Å) Cite: Structure-Guided Design of a Domain-Selective Bromodomain and Extra Terminal N-Terminal Bromodomain Chemical Probe. J.Med.Chem., 66, 2023
8PYI	Human IGF1R with inhibitor 6 Descriptor: 3-[8-azanyl-1-(4-ethoxy-8-fluoranyl-2-phenyl-quinolin-7-yl)imidazo[1,5-a]pyrazin-3-yl]-1-methyl-cyclobutan-1-ol, Insulin-like growth factor 1 receptor beta chain Authors: Dreyer, M.K, Wang, J, Elkins, J.M. Deposit date: 2023-07-25 Release date: 2023-09-20 Method: X-RAY DIFFRACTION (3.06 Å) Cite: Human IGF1R with inhibitor 6 To Be Published
8PYJ	Human IGF1R with inhibitor 8 Descriptor: 5,5-dimethyl-1-(quinolin-4-ylmethyl)-3-[4-(trifluoromethylsulfonyl)phenyl]imidazolidine-2,4-dione, CADMIUM ION, Insulin-like growth factor 1 receptor beta chain, ... Authors: Dreyer, M.K, Wang, J, Elkins, J.M. Deposit date: 2023-07-25 Release date: 2023-09-20 Method: X-RAY DIFFRACTION (2.702 Å) Cite: Human IGF1R with inhibitor 8 To Be Published
8PYK	Human IGF1R with inhibitor 47 Descriptor: 5,5-dimethyl-1-(1H-pyrrolo[2,3-b]pyridin-3-ylmethyl)-3-[4-(trifluoromethylsulfanyl)phenyl]imidazolidine-2,4-dione, Insulin-like growth factor 1 receptor beta chain, NICKEL (II) ION Authors: Dreyer, M.K, Wang, J, Elkins, J.M. Deposit date: 2023-07-25 Release date: 2023-09-20 Method: X-RAY DIFFRACTION (2.23 Å) Cite: Human IGF1R with inhibitor 47 To Be Published
8PYL	Human IGF1R with inhibitor 53 Descriptor: (5S)-5-methyl-1-(1H-pyrrolo[2,3-b]pyridin-4-ylmethyl)-3-[4-(trifluoromethylsulfanyl)phenyl]imidazolidine-2,4-dione, CADMIUM ION, Insulin-like growth factor 1 receptor beta chain, ... Authors: Dreyer, M.K, Wang, J, Elkins, J.M. Deposit date: 2023-07-25 Release date: 2023-09-20 Method: X-RAY DIFFRACTION (2.93 Å) Cite: Human IGF1R with inhibitor 53 To Be Published
8PYM	Human IGF1R with inhibitor 54 Descriptor: 5,5-dimethyl-1-(1H-pyrrolo[2,3-b]pyridin-4-ylmethyl)-3-[4-(trifluoromethylsulfanyl)phenyl]imidazolidine-2,4-dione, CADMIUM ION, Insulin-like growth factor 1 receptor beta chain, ... Authors: Dreyer, M.K, Wang, J, Elkins, J.M. Deposit date: 2023-07-25 Release date: 2023-09-20 Method: X-RAY DIFFRACTION (2.652 Å) Cite: Human IGF1R with inhibitor 54 To Be Published
8PYN	Human IGF1R with inhibitor 56 Descriptor: 5,5-dimethyl-1-(1H-pyrrolo[2,3-b]pyridin-4-ylmethyl)-3-[4-(trifluoromethylsulfonyl)phenyl]imidazolidine-2,4-dione, CADMIUM ION, Insulin-like growth factor 1 receptor beta chain, ... Authors: Dreyer, M.K, Wang, J, Elkins, J.M. Deposit date: 2023-07-25 Release date: 2023-09-20 Method: X-RAY DIFFRACTION (1.71 Å) Cite: Human IGF1R with inhibitor 56 To Be Published
8PYS	Cryo-EM structure of the DyP peroxidase-loaded encapsulin nanocompartment from Mycobacterium tuberculosis with icosahedral symmetry imposed. Descriptor: 29 kDa antigen CFP29 Authors: Willmore, R, Woodward, J.D. Deposit date: 2023-07-26 Release date: 2023-08-09 Method: ELECTRON MICROSCOPY (2.7 Å) Cite: The 2.7 A resolution cryo-EM reconstruction of Mycobacterium tuberculosis encapsulin nanocompartment containing DyP peroxidase. To Be Published
8Q0N	HACE1 in complex with RAC1 Q61L Descriptor: E3 ubiquitin-protein ligase HACE1, GUANOSINE-5'-TRIPHOSPHATE, Ras-related C3 botulinum toxin substrate 1, ... Authors: Wolter, M, Duering, J, Dienemann, C, Lorenz, S. Deposit date: 2023-07-28 Release date: 2024-01-10 Last modified: 2024-02-28 Method: ELECTRON MICROSCOPY (4.2 Å) Cite: Structural mechanisms of autoinhibition and substrate recognition by the ubiquitin ligase HACE1. Nat.Struct.Mol.Biol., 31, 2024
8Q0R	X-ray structure of MNEI mutant Mut9 (E23A, C41A, Y65R, S76Y) Descriptor: ACETATE ION, Monellin chain B,Monellin chain A, SULFATE ION Authors: Ferraro, G, Merlino, A, Lucignano, R, Picone, D. Deposit date: 2023-07-29 Release date: 2024-02-07 Method: X-RAY DIFFRACTION (1.55 Å) Cite: Structural insights and aggregation propensity of a super-stable monellin mutant: A new potential building block for protein-based nanostructured materials. Int.J.Biol.Macromol., 254, 2024
8Q0S	X-ray structure of the single chain monellin derivative MNEI Descriptor: ACETATE ION, GLYCEROL, Monellin chain B,Monellin chain A, ... Authors: Ferraro, G, Merlino, A, Lucignano, R, Picone, D. Deposit date: 2023-07-29 Release date: 2024-02-07 Method: X-RAY DIFFRACTION (1.19 Å) Cite: Structural insights and aggregation propensity of a super-stable monellin mutant: A new potential building block for protein-based nanostructured materials. Int.J.Biol.Macromol., 254, 2024
8Q2D	Crystal structure of the E. coli PqiC Lipoprotein residues 17-187 Descriptor: Intermembrane transport lipoprotein PqiC Authors: Cooper, B.F, Knowles, T.J. Deposit date: 2023-08-02 Release date: 2023-09-20 Last modified: 2024-01-31 Method: X-RAY DIFFRACTION (2.08 Å) Cite: An octameric PqiC toroid stabilises the outer-membrane interaction of the PqiABC transport system. Embo Rep., 25, 2024
8Q2M	18mer DNA mimic Foldamer with an Aliphatic linker in complex with Sac7d V26A/M29A protein Descriptor: DNA mimic Foldamer, DNA-binding protein 7b Authors: Deepak, D, Corvaglia, V, Wu, J, Huc, I. Deposit date: 2023-08-02 Release date: 2023-08-23 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (3.21 Å) Cite: 18mer DNA mimic foldamer with Alphatic linker in complex with Sac7d wild protein. To Be Published
8Q30	Sulfolobus acidocaldarius AAP filament. Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 6-deoxy-6-sulfo-beta-D-glucopyranose-(1-3)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ... Authors: Isupov, M.N, Gaines, M, Daum, B, McLaren, M. Deposit date: 2023-08-03 Release date: 2024-03-06 Last modified: 2024-06-26 Method: ELECTRON MICROSCOPY (3.22 Å) Cite: CryoEM reveals the structure of an archaeal pilus involved in twitching motility. Nat Commun, 15, 2024
8Q36	Structure of Nucleosome Core with a Bound Metallopeptide Conjugate (Foamy Virus GAG Peptide-Au[I] Compound) Descriptor: DNA (145-MER), GAG structural protein, Histone H2A type 1-B/E, ... Authors: De Falco, L, Batchelor, L.K, Dyson, P.J, Davey, C.A. Deposit date: 2023-08-03 Release date: 2024-03-27 Method: X-RAY DIFFRACTION (2.604 Å) Cite: Viral peptide conjugates for metal-warhead delivery to chromatin. Rsc Adv, 14, 2024
8Q3E	High Resolution Structure of Nucleosome Core with Bound Foamy Virus GAG Peptide Descriptor: DNA (145-MER), GLY-GLY-TYR-ASN-LEU-ARG-PRO-ARG-THR-TYR-GLN-PRO-GLN-ARG-TYR-GLY-GLY-GLY, Histone H2A type 1-B/E, ... Authors: De Falco, L, Batchelor, L.K, Dyson, P.J, Davey, C.A. Deposit date: 2023-08-04 Release date: 2024-03-27 Method: X-RAY DIFFRACTION (2.174 Å) Cite: Viral peptide conjugates for metal-warhead delivery to chromatin. Rsc Adv, 14, 2024
8Q3M	Structure of Nucleosome Core with a Bound Kaposi Sarcoma Associated Herpesvirus LANA Peptide Having a Methionine to Ornithine Substitution Descriptor: DNA (145-MER), Histone H2A type 1-B/E, Histone H2B type 1-K, ... Authors: De Falco, L, Batchelor, L.K, Dyson, P.J, Davey, C.A. Deposit date: 2023-08-04 Release date: 2024-03-27 Method: X-RAY DIFFRACTION (2.503 Å) Cite: Viral peptide conjugates for metal-warhead delivery to chromatin. Rsc Adv, 14, 2024
8Q3O	Bacterial transcription termination factor Rho + pppGpp Descriptor: MAGNESIUM ION, Transcription termination factor Rho, guanosine 5'-(tetrahydrogen triphosphate) 3'-(trihydrogen diphosphate) Authors: Said, N, Hilal, T, Wahl, M.C. Deposit date: 2023-08-04 Release date: 2023-09-27 Method: ELECTRON MICROSCOPY (3 Å) Cite: Transcription termination factor rho polymerizes under stress. Biorxiv, 2023
8Q3X	Structure of Nucleosome Core with a Bound Metallopeptide Conjugate (Kaposi Sarcoma Associated Herpesvirus LANA Peptide-Au[I] Compound) Descriptor: 4-diphenylphosphanylbenzoic acid, DNA (145-MER), GOLD ION, ... Authors: De Falco, L, Batchelor, L.K, Dyson, P.J, Davey, C.A. Deposit date: 2023-08-04 Release date: 2024-03-27 Method: X-RAY DIFFRACTION (2.301 Å) Cite: Viral peptide conjugates for metal-warhead delivery to chromatin. Rsc Adv, 14, 2024
8Q4D	IstA-IstB(E167Q) Strand Transfer Complex Descriptor: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, DNA (118-MER) / TIR-transferred strand, ... Authors: de la Gandara, A, Spinola-Amilibia, M, Araujo-Bazan, L, Nunez-Ramirez, R, Berger, J.M, Arias-Palomo, E. Deposit date: 2023-08-06 Release date: 2024-07-10 Method: ELECTRON MICROSCOPY (3.62 Å) Cite: Molecular basis for transposase activation by a dedicated AAA+ ATPase. Nature, 630, 2024
8Q4K	Crystal structure of Borrelia burgdorferi BB0158 Descriptor: S2 lipoprotein, SULFATE ION Authors: Brangulis, K, Tars, K. Deposit date: 2023-08-07 Release date: 2024-01-03 Method: X-RAY DIFFRACTION (2.4 Å) Cite: Structural studies of chromosomally encoded outer surface lipoprotein BB0158 from Borrelia burgdorferi sensu stricto. Ticks Tick Borne Dis, 15, 2024
8Q5I	Structure of Candida albicans 80S ribosome in complex with cephaeline Descriptor: 18S ribosomal RNA, 25S rRNA, 40S ribosomal protein S0, ... Authors: Kolosova, O, Zgadzay, Y, Stetsenko, A, Atamas, A, Guskov, A, Yusupov, M. Deposit date: 2023-08-09 Release date: 2023-09-13 Last modified: 2024-01-31 Method: ELECTRON MICROSCOPY (2.45 Å) Cite: Structural characterization of cephaeline binding to the eukaryotic ribosome using Cryo-Electron Microscopy Biopolym Cell, 2023

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