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Legacy flatfile-incompatible PDB entries
8E52
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BU of 8e52 by Molmil
MicroED structure of proteinase K recorded on K2
Descriptor: CALCIUM ION, Proteinase K
Authors:Clabbers, M.T.B, Martynowycz, M.W, Hattne, J, Nannenga, B.L, Gonen, T.
Deposit date:2022-08-19
Release date:2022-09-21
Last modified:2022-10-19
Method:ELECTRON CRYSTALLOGRAPHY (2.8 Å)
Cite:Electron-counting MicroED data with the K2 and K3 direct electron detectors.
J.Struct.Biol., 214, 2022
8E53
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BU of 8e53 by Molmil
MicroED structure of proteinase K recorded on K3
Descriptor: CALCIUM ION, Proteinase K
Authors:Clabbers, M.T.B, Martynowycz, M.W, Hattne, J, Nannenga, B.L, Gonen, T.
Deposit date:2022-08-19
Release date:2022-09-21
Last modified:2022-10-19
Method:ELECTRON CRYSTALLOGRAPHY (1.7 Å)
Cite:Electron-counting MicroED data with the K2 and K3 direct electron detectors.
J.Struct.Biol., 214, 2022
8E54
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BU of 8e54 by Molmil
MicroED structure of triclinic lysozyme recorded on K3
Descriptor: Lysozyme C, NITRATE ION
Authors:Clabbers, M.T.B, Martynowycz, M.W, Hattne, J, Nannenga, B.L, Gonen, T.
Deposit date:2022-08-19
Release date:2022-09-21
Last modified:2022-10-19
Method:ELECTRON CRYSTALLOGRAPHY (1.2 Å)
Cite:Electron-counting MicroED data with the K2 and K3 direct electron detectors.
J.Struct.Biol., 214, 2022
8E5U
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BU of 8e5u by Molmil
Co-crystal structure of Chaetomium glucosidase with compound 9
Descriptor: (2R,3R,4R,5S)-2-(hydroxymethyl)-1-(6-{2-nitro-4-[(1R,5S)-3-oxa-8-azabicyclo[3.2.1]octan-8-yl]anilino}hexyl)piperidine-3,4,5-triol, 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Karade, S.S, Mariuzza, R.A.
Deposit date:2022-08-22
Release date:2023-02-22
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.33 Å)
Cite:Structure-Based Design of Potent Iminosugar Inhibitors of Endoplasmic Reticulum alpha-Glucosidase I with Anti-SARS-CoV-2 Activity.
J.Med.Chem., 66, 2023
8E6G
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BU of 8e6g by Molmil
Co-crystal structure of Chaetomium glucosidase with compound 10
Descriptor: (2R,3R,4R,5S)-1-(6-{[(5M)-3-cyclopropyl-5-(pyridazin-3-yl)phenyl]amino}hexyl)-2-(hydroxymethyl)piperidine-3,4,5-triol, 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Karade, S.S, Mariuzza, R.A.
Deposit date:2022-08-22
Release date:2023-02-22
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structure-Based Design of Potent Iminosugar Inhibitors of Endoplasmic Reticulum alpha-Glucosidase I with Anti-SARS-CoV-2 Activity.
J.Med.Chem., 66, 2023
8E73
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BU of 8e73 by Molmil
Vigna radiata supercomplex I+III2 (full bridge)
Descriptor: 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE, 1,2-Distearoyl-sn-glycerophosphoethanolamine, CARDIOLIPIN, ...
Authors:Maldonado, M, Letts, J.A.
Deposit date:2022-08-23
Release date:2023-01-11
Last modified:2023-02-08
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Plant-specific features of respiratory supercomplex I + III 2 from Vigna radiata.
Nat.Plants, 9, 2023
8EAF
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BU of 8eaf by Molmil
SsoMCM hexamer bound to Mg/ADP-BeFx and 12-mer oligo-dT. Class 1
Descriptor: 12-mer oligo dT, MAGNESIUM ION, Minichromosome maintenance protein MCM, ...
Authors:Meagher, M, Myasnikov, A, Enemark, E.J.
Deposit date:2022-08-29
Release date:2022-12-14
Last modified:2024-06-19
Method:ELECTRON MICROSCOPY (2.62 Å)
Cite:Two Distinct Modes of DNA Binding by an MCM Helicase Enable DNA Translocation.
Int J Mol Sci, 23, 2022
8EAG
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BU of 8eag by Molmil
SsoMCM hexamer bound to Mg/ADP-BeFx and 12-mer oligo-dT. Class 2
Descriptor: 12-mer oligo-dT, MAGNESIUM ION, Minichromosome maintenance protein MCM, ...
Authors:Meagher, M, Myasnikov, A, Enemark, E.J.
Deposit date:2022-08-29
Release date:2022-12-14
Last modified:2024-06-19
Method:ELECTRON MICROSCOPY (3.01 Å)
Cite:Two Distinct Modes of DNA Binding by an MCM Helicase Enable DNA Translocation.
Int J Mol Sci, 23, 2022
8EAH
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BU of 8eah by Molmil
SsoMCM hexamer bound to Mg/ADP-BeFx and 16-mer oligo-dT. Class 1
Descriptor: 16-mer oligo-dT, MAGNESIUM ION, Minichromosome maintenance protein MCM, ...
Authors:Meagher, M, Myasnikov, A, Enemark, E.J.
Deposit date:2022-08-29
Release date:2022-12-14
Last modified:2024-06-19
Method:ELECTRON MICROSCOPY (2.48 Å)
Cite:Two Distinct Modes of DNA Binding by an MCM Helicase Enable DNA Translocation.
Int J Mol Sci, 23, 2022
8EAI
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BU of 8eai by Molmil
SsoMCM hexamer bound to Mg/ADP-BeFx and 16-mer oligo-dT. Class 2
Descriptor: 16-mer oligo-dT, MAGNESIUM ION, Minichromosome maintenance protein MCM, ...
Authors:Meagher, M, Myasnikov, A, Enemark, E.J.
Deposit date:2022-08-29
Release date:2022-12-14
Last modified:2024-06-19
Method:ELECTRON MICROSCOPY (2.76 Å)
Cite:Two Distinct Modes of DNA Binding by an MCM Helicase Enable DNA Translocation.
Int J Mol Sci, 23, 2022
8EAJ
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BU of 8eaj by Molmil
SsoMCM hexamer bound to Mg/ADP-BeFx and 46-mer DNA strand. Class 1
Descriptor: 46-mer DNA strand, MAGNESIUM ION, Minichromosome maintenance protein MCM, ...
Authors:Meagher, M, Myasnikov, A, Enemark, E.J.
Deposit date:2022-08-29
Release date:2022-12-14
Last modified:2024-06-19
Method:ELECTRON MICROSCOPY (2.45 Å)
Cite:Two Distinct Modes of DNA Binding by an MCM Helicase Enable DNA Translocation.
Int J Mol Sci, 23, 2022
8EAK
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BU of 8eak by Molmil
SsoMCM hexamer bound to Mg/ADP-BeFx and 46-mer DNA strand. Class 2
Descriptor: 46-mer DNA, MAGNESIUM ION, Minichromosome maintenance protein MCM, ...
Authors:Meagher, M, Myasnikov, A, Enemark, E.J.
Deposit date:2022-08-29
Release date:2022-12-14
Last modified:2024-06-19
Method:ELECTRON MICROSCOPY (2.67 Å)
Cite:Two Distinct Modes of DNA Binding by an MCM Helicase Enable DNA Translocation.
Int J Mol Sci, 23, 2022
8EAL
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BU of 8eal by Molmil
SsoMCM hexamer bound to Mg/ADP-BeFx and DNA. Class 1. Merged particles from datasets with 3 different DNA entities
Descriptor: DNA, MAGNESIUM ION, Minichromosome maintenance protein MCM, ...
Authors:Meagher, M, Myasnikov, A, Enemark, E.J.
Deposit date:2022-08-29
Release date:2022-12-14
Last modified:2024-06-19
Method:ELECTRON MICROSCOPY (2.34 Å)
Cite:Two Distinct Modes of DNA Binding by an MCM Helicase Enable DNA Translocation.
Int J Mol Sci, 23, 2022
8EAM
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BU of 8eam by Molmil
SsoMCM hexamer bound to Mg/ADP-BeFx and DNA. Class 2. Merged particles from datasets with 3 different DNA entities
Descriptor: DNA, MAGNESIUM ION, Minichromosome maintenance protein MCM, ...
Authors:Meagher, M, Myasnikov, A, Enemark, E.J.
Deposit date:2022-08-29
Release date:2022-12-14
Last modified:2024-06-19
Method:ELECTRON MICROSCOPY (2.59 Å)
Cite:Two Distinct Modes of DNA Binding by an MCM Helicase Enable DNA Translocation.
Int J Mol Sci, 23, 2022
8EAQ
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BU of 8eaq by Molmil
Structure of the full-length IP3R1 channel determined at high Ca2+
Descriptor: (9R,11S)-9-({[(1S)-1-HYDROXYHEXADECYL]OXY}METHYL)-2,2-DIMETHYL-5,7,10-TRIOXA-2LAMBDA~5~-AZA-6LAMBDA~5~-PHOSPHAOCTACOSANE-6,6,11-TRIOL, CALCIUM ION, Inositol 1,4,5-trisphosphate receptor type 1, ...
Authors:Fan, G, Baker, M.R, Terry, L.E, Arige, V, Chen, M, Seryshev, A.B, Baker, M.L, Ludtke, S.J, Yule, D.I, Serysheva, I.I.
Deposit date:2022-08-29
Release date:2022-11-23
Method:ELECTRON MICROSCOPY (3.26 Å)
Cite:Conformational motions and ligand-binding underlying gating and regulation in IP 3 R channel.
Nat Commun, 13, 2022
8EC9
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BU of 8ec9 by Molmil
Covalently stabilized triangular trimer derived from Abeta16-36 with p-iodo-phenylalanine
Descriptor: ORN-LYS-LEU-VAL-PHI-PHE-ALA-GLU-ORN-CYS-ILE-ILE-SAR-CYS-MET-VAL
Authors:Kreutzer, A.G, Yoo, S, Nowick, J.S.
Deposit date:2022-09-01
Release date:2023-05-31
Last modified:2023-06-07
Method:X-RAY DIFFRACTION (2.169 Å)
Cite:Probing differences among A beta oligomers with two triangular trimers derived from A beta.
Proc.Natl.Acad.Sci.USA, 120, 2023
8ECA
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BU of 8eca by Molmil
Covalently stabilized triangular trimer derived from Abeta16-36
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, CHLORIDE ION, ORN-LYS-LEU-VAL-PHE-PHE-ALA-GLU-ORN-CYS-ILE-ILE-SAR-CYS-MET
Authors:Kreutzer, A.G, Yoo, S, Nowick, J.S.
Deposit date:2022-09-01
Release date:2023-05-31
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.27 Å)
Cite:Probing differences among A beta oligomers with two triangular trimers derived from A beta.
Proc.Natl.Acad.Sci.USA, 120, 2023
8ECM
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BU of 8ecm by Molmil
Crystal Structure Analysis of Acetyl-CoA acetyltransferase from Firmicutes bacterium
Descriptor: Acetyl-CoA acetyltransferase
Authors:Seo, H.S, Dhe-Paganon, S.
Deposit date:2022-09-02
Release date:2023-05-31
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.89 Å)
Cite:Gut microbial metabolism of 5-ASA diminishes its clinical efficacy in inflammatory bowel disease.
Nat Med, 29, 2023
8ECW
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BU of 8ecw by Molmil
Co-crystal structure of Chaetomium glucosidase with compound 11
Descriptor: (2R,3R,4R,5S)-1-{2-[4-(2-{[(5M)-3-chloro-5-(pyridazin-3-yl)phenyl]amino}ethyl)phenyl]ethyl}-2-(hydroxymethyl)piperidine-3,4,5-triol, 2-acetamido-2-deoxy-beta-D-glucopyranose, Chaetomium alpha glucosidase, ...
Authors:Karade, S.S, Mariuzza, R.A.
Deposit date:2022-09-02
Release date:2023-02-22
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Structure-Based Design of Potent Iminosugar Inhibitors of Endoplasmic Reticulum alpha-Glucosidase I with Anti-SARS-CoV-2 Activity.
J.Med.Chem., 66, 2023
8ED0
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BU of 8ed0 by Molmil
Cryo-EM Structure of the P74-26 Tail Tube
Descriptor: Tail Tube Protein gp93
Authors:Agnello, E, Pajak, J, Liu, X, Kelch, B.
Deposit date:2022-09-02
Release date:2023-03-08
Last modified:2024-06-19
Method:ELECTRON MICROSCOPY (2.72 Å)
Cite:Conformational dynamics control assembly of an extremely long bacteriophage tail tube.
J.Biol.Chem., 299, 2023
8EDK
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BU of 8edk by Molmil
Structure of C. elegans UNC-6 LamN and EGF domains
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, Netrin unc-6, ...
Authors:Priest, J.M, Ozkan, E.
Deposit date:2022-09-04
Release date:2023-01-11
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structure of C. elegans UNC-6/Netrin LamN and 3 EGF Domains
To Be Published
8EDX
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BU of 8edx by Molmil
Cryo-EM Structure of P74-26 tail-like tubes
Descriptor: Tail Tube Protein gp93
Authors:Agnello, E, Pajak, J, Liu, X, Kelch, B.
Deposit date:2022-09-06
Release date:2023-03-08
Last modified:2024-06-19
Method:ELECTRON MICROSCOPY (2.81 Å)
Cite:Conformational dynamics control assembly of an extremely long bacteriophage tail tube.
J.Biol.Chem., 299, 2023
8EEY
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BU of 8eey by Molmil
Cas7-11 in complex with DR-mismatched target RNA, Csx29 and Csx30
Descriptor: Cas7-11, Csx29, Csx30, ...
Authors:Demircioglu, F.E, Wilkinson, M.E, Strecker, J, Li, D, Faure, G, Macrae, R.K, Zhang, F.
Deposit date:2022-09-07
Release date:2022-11-16
Last modified:2024-06-19
Method:ELECTRON MICROSCOPY (2.53 Å)
Cite:RNA-activated protein cleavage with a CRISPR-associated endopeptidase.
Science, 378, 2022
8EFR
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BU of 8efr by Molmil
CryoEM of the soluble OPA1 interfaces with GDP-AlFx bound from the helical assembly on a lipid membrane
Descriptor: Dynamin-like 120 kDa protein, form S1, GUANOSINE-5'-DIPHOSPHATE, ...
Authors:Nyenhuis, S.B, Wu, X, Stanton, A.E, Strub, M.P, Yim, Y.I, Canagarajah, B, Hinshaw, J.E.
Deposit date:2022-09-09
Release date:2023-06-28
Last modified:2023-09-13
Method:ELECTRON MICROSCOPY (5.48 Å)
Cite:OPA1 helical structures give perspective to mitochondrial dysfunction.
Nature, 620, 2023
8EFT
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BU of 8eft by Molmil
CryoEM of the soluble OPA1 interfaces from the apo helical assembly on a lipid membrane
Descriptor: Dynamin-like 120 kDa protein, form S1
Authors:Nyenhuis, S.B, Wu, X, Stanton, A.E, Strub, M.P, Yim, Y.I, Canagarajah, B, Hinshaw, J.E.
Deposit date:2022-09-09
Release date:2023-06-28
Last modified:2023-09-13
Method:ELECTRON MICROSCOPY (9.68 Å)
Cite:OPA1 helical structures give perspective to mitochondrial dysfunction.
Nature, 620, 2023

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