Legacy flatfile-incompatible PDB entries

7PA9	JC polyomavirus VP1 in complex with Fab 98D3 Descriptor: Fab 98D3 VH, Fab 98D3 VL, Major capsid protein VP1 Authors: Stroeh, L.J, Harprecht, C, Freytag, J, Stehle, T. Deposit date: 2021-07-29 Release date: 2023-02-08 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (2.75 Å) Cite: Structural characterization of human neutralizing antibodies against JC and BK polyomavirus To Be Published
7PAA	JC polyomavirus VP1 in complex with scFv 29B1 Descriptor: Major capsid protein VP1, scFv 29B1 Authors: Harprecht, C, Stroeh, L.J, Freytag, J, Stehle, T. Deposit date: 2021-07-29 Release date: 2023-02-08 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (3.102 Å) Cite: Structural characterization of human neutralizing antibodies against JC and BK polyomavirus To Be Published
7PAH	70S ribosome with P- and E-site tRNAs in Mycoplasma pneumoniae cells Descriptor: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... Authors: Xue, L, Lenz, S, Rappsilber, J, Mahamid, J. Deposit date: 2021-07-30 Release date: 2022-05-25 Last modified: 2022-10-19 Method: ELECTRON MICROSCOPY (9.5 Å) Cite: Visualizing translation dynamics at atomic detail inside a bacterial cell. Nature, 610, 2022
7PAI	70S ribosome with P-site tRNA in Mycoplasma pneumoniae cells Descriptor: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... Authors: Xue, L, Lenz, S, Rappsilber, J, Mahamid, J. Deposit date: 2021-07-30 Release date: 2022-05-25 Last modified: 2022-10-19 Method: ELECTRON MICROSCOPY (6.7 Å) Cite: Visualizing translation dynamics at atomic detail inside a bacterial cell. Nature, 610, 2022
7PAJ	70S ribosome with EF-Tu-tRNA, P- and E-site tRNAs in Mycoplasma pneumoniae cells Descriptor: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... Authors: Xue, L, Lenz, S, Rappsilber, J, Mahamid, J. Deposit date: 2021-07-30 Release date: 2022-05-25 Last modified: 2022-10-19 Method: ELECTRON MICROSCOPY (7.3 Å) Cite: Visualizing translation dynamics at atomic detail inside a bacterial cell. Nature, 610, 2022
7PAK	70S ribosome with EF-Tu-tRNA and P-site tRNA in Mycoplasma pneumoniae cells Descriptor: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... Authors: Xue, L, Lenz, S, Rappsilber, J, Mahamid, J. Deposit date: 2021-07-30 Release date: 2022-05-25 Last modified: 2022-10-19 Method: ELECTRON MICROSCOPY (5.3 Å) Cite: Visualizing translation dynamics at atomic detail inside a bacterial cell. Nature, 610, 2022
7PAL	70S ribosome with A- and P-site tRNAs in Mycoplasma pneumoniae cells Descriptor: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... Authors: Xue, L, Lenz, S, Rappsilber, J, Mahamid, J. Deposit date: 2021-07-30 Release date: 2022-05-25 Last modified: 2023-07-26 Method: ELECTRON MICROSCOPY (4.7 Å) Cite: Visualizing translation dynamics at atomic detail inside a bacterial cell. Nature, 610, 2022
7PAM	70S ribosome with A*- and P/E-site tRNAs in Mycoplasma pneumoniae cells Descriptor: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... Authors: Xue, L, Lenz, S, Rappsilber, J, Mahamid, J. Deposit date: 2021-07-30 Release date: 2022-05-25 Last modified: 2022-10-19 Method: ELECTRON MICROSCOPY (6.8 Å) Cite: Visualizing translation dynamics at atomic detail inside a bacterial cell. Nature, 610, 2022
7PAN	70S ribosome with A/P- and P/E-site tRNAs in Mycoplasma pneumoniae cells Descriptor: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... Authors: Xue, L, Lenz, S, Rappsilber, J, Mahamid, J. Deposit date: 2021-07-30 Release date: 2022-05-25 Last modified: 2022-10-19 Method: ELECTRON MICROSCOPY (9.7 Å) Cite: Visualizing translation dynamics at atomic detail inside a bacterial cell. Nature, 610, 2022
7PAO	70S ribosome with EF-G, A*- and P/E-site tRNAs in Mycoplasma pneumoniae cells Descriptor: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... Authors: Xue, L, Lenz, S, Rappsilber, J, Mahamid, J. Deposit date: 2021-07-30 Release date: 2022-05-25 Last modified: 2022-10-19 Method: ELECTRON MICROSCOPY (7 Å) Cite: Visualizing translation dynamics at atomic detail inside a bacterial cell. Nature, 610, 2022
7PAQ	70S ribosome with EF-G, A/P- and P/E-site tRNAs in Mycoplasma pneumoniae cells Descriptor: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... Authors: Xue, L, Lenz, S, Rappsilber, J, Mahamid, J. Deposit date: 2021-07-30 Release date: 2022-05-25 Last modified: 2022-10-19 Method: ELECTRON MICROSCOPY (8.9 Å) Cite: Visualizing translation dynamics at atomic detail inside a bacterial cell. Nature, 610, 2022
7PAR	70S ribosome with EF-G, ap/P- and pe/E-site tRNAs in Mycoplasma pneumoniae cells Descriptor: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... Authors: Xue, L, Lenz, S, Rappsilber, J, Mahamid, J. Deposit date: 2021-07-30 Release date: 2022-05-25 Last modified: 2022-10-19 Method: ELECTRON MICROSCOPY (8.2 Å) Cite: Visualizing translation dynamics at atomic detail inside a bacterial cell. Nature, 610, 2022
7PAS	70S ribosome with P/E-site tRNA in Mycoplasma pneumoniae cells Descriptor: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... Authors: Xue, L, Lenz, S, Rappsilber, J, Mahamid, J. Deposit date: 2021-07-30 Release date: 2022-05-25 Last modified: 2022-10-19 Method: ELECTRON MICROSCOPY (16 Å) Cite: Visualizing translation dynamics at atomic detail inside a bacterial cell. Nature, 610, 2022
7PB3	Structural and Functional analysis of the Proline Racemase (ProR) from the Gram-positive bacterium Acetoanaerobium sticklandii Descriptor: PYRROLE-2-CARBOXYLATE, Proline racemase A (AsProR) Authors: Najmudin, S, Pan, X.-S, McAuley, K.E, Fisher, L.M, Sanderson, M.R. Deposit date: 2021-07-30 Release date: 2022-08-10 Last modified: 2024-01-31 Method: X-RAY DIFFRACTION (2.841 Å) Cite: Structural and Functional analysis of the Proline Racemase (ProR) from the Gram-positive bacterium Acetoanaerobium sticklandii To Be Published
7PBC	Crystal structure of engineered TCR (796) complexed to HLA-A*02:01 presenting MAGE-A10 9-mer peptide Descriptor: Beta-2-microglobulin, CHLORIDE ION, GLYCEROL, ... Authors: Simister, P.C, Border, E.C, Vieira, J.F, Pumphrey, N.J. Deposit date: 2021-08-02 Release date: 2022-08-03 Last modified: 2024-01-31 Method: X-RAY DIFFRACTION (2.04 Å) Cite: Structural insights into engineering a T-cell receptor targeting MAGE-A10 with higher affinity and specificity for cancer immunotherapy. J Immunother Cancer, 10, 2022
7PBD	a1b3 GABA-A receptor + GABA Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, GAMMA-AMINO-BUTANOIC ACID, ... Authors: Miller, P.S, Kasaragod, V.B. Deposit date: 2021-08-02 Release date: 2022-02-09 Last modified: 2023-11-15 Method: ELECTRON MICROSCOPY (3.04 Å) Cite: Mechanisms of inhibition and activation of extrasynaptic alpha beta GABA A receptors. Nature, 602, 2022
7PBJ	Cryo-EM structure of the GroEL-GroES complex with ADP bound to both rings ("wide" conformation). Descriptor: 10 kDa chaperonin, 60 kDa chaperonin, ADENOSINE-5'-DIPHOSPHATE, ... Authors: Pichkur, E.B, Stanishneva-Konovalova, T.B. Deposit date: 2021-08-02 Release date: 2021-11-24 Last modified: 2021-12-01 Method: ELECTRON MICROSCOPY (3.4 Å) Cite: Novel cryo-EM structure of an ADP-bound GroEL-GroES complex. Sci Rep, 11, 2021
7PBU	RuvAB branch migration motor complexed to the Holliday junction - RuvA-HJ core [t2 dataset] Descriptor: Holliday junction, Holliday junction ATP-dependent DNA helicase RuvA Authors: Goessweiner-Mohr, N, Fahrenkamp, D, Wald, J, Marlovits, T.C. Deposit date: 2021-08-02 Release date: 2022-09-14 Last modified: 2023-01-18 Method: ELECTRON MICROSCOPY (3.3 Å) Cite: Mechanism of AAA+ ATPase-mediated RuvAB-Holliday junction branch migration. Nature, 609, 2022
7PBW	Cryo-EM structure of light harvesting complex 2 from Rba. sphaeroides. Descriptor: BACTERIOCHLOROPHYLL A, CALCIUM ION, LAURYL DIMETHYLAMINE-N-OXIDE, ... Authors: Qian, P, Swainsbury, D.J.K, Croll, T.I, Castro-Hartmann, P, Sader, K, Divitini, G, Hunter, C.N. Deposit date: 2021-08-02 Release date: 2021-11-24 Last modified: 2022-12-07 Method: ELECTRON MICROSCOPY (2.1 Å) Cite: Cryo-EM Structure of the Rhodobacter sphaeroides Light-Harvesting 2 Complex at 2.1 angstrom. Biochemistry, 60, 2021
7PBX	Cryo-EM structure of the GroEL-GroES complex with ADP bound to both rings ("tight" conformation). Descriptor: 10 kDa chaperonin, 60 kDa chaperonin, ADENOSINE-5'-DIPHOSPHATE, ... Authors: Pichkur, E.B, Stanishneva-Konovalova, T.B. Deposit date: 2021-08-02 Release date: 2021-11-24 Last modified: 2021-12-01 Method: ELECTRON MICROSCOPY (3.43 Å) Cite: Novel cryo-EM structure of an ADP-bound GroEL-GroES complex. Sci Rep, 11, 2021
7PBZ	a1b3 GABA-A receptor + GABA + Zn2+ Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, DECANE, ... Authors: Miller, P.S, Kasaragod, V.B. Deposit date: 2021-08-03 Release date: 2022-02-09 Last modified: 2023-11-15 Method: ELECTRON MICROSCOPY (2.79 Å) Cite: Mechanisms of inhibition and activation of extrasynaptic alpha beta GABA A receptors. Nature, 602, 2022
7PC0	GABA-A receptor bound by a-Cobratoxin Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Alpha-cobratoxin, ... Authors: Kasaragod, V.B, Miller, P.S. Deposit date: 2021-08-03 Release date: 2022-02-09 Last modified: 2022-03-02 Method: ELECTRON MICROSCOPY (3 Å) Cite: Mechanisms of inhibition and activation of extrasynaptic alpha beta GABA A receptors. Nature, 602, 2022
7PD3	Structure of the human mitoribosomal large subunit in complex with NSUN4.MTERF4.GTPBP7 and MALSU1.L0R8F8.mt-ACP Descriptor: 16S rRNA, 39S ribosomal protein L10, mitochondrial, ... Authors: Chandrasekaran, V, Desai, N, Burton, N.O, Yang, H, Price, J, Miska, E.A, Ramakrishnan, V. Deposit date: 2021-08-04 Release date: 2021-11-17 Method: ELECTRON MICROSCOPY (3.4 Å) Cite: Visualizing formation of the active site in the mitochondrial ribosome. Elife, 10, 2021
7PD6	Crystal structure of Lymnaea stagnalis Acetylcholine-binding protein (Ls-AChBP) Q55R/M114V double mutant complexed with Sulfoxaflor Descriptor: Acetylcholine-binding protein, Sulfoxaflor Authors: Montgomery, M.G. Deposit date: 2021-08-04 Release date: 2022-02-02 Last modified: 2024-01-31 Method: X-RAY DIFFRACTION (2 Å) Cite: Structural Biology-Guided Design, Synthesis, and Biological Evaluation of Novel Insect Nicotinic Acetylcholine Receptor Orthosteric Modulators. J.Med.Chem., 65, 2022
7PDB	Crystal structure of Lymnaea stagnalis Acetylcholine-binding protein (Ls-AChBP) Q55R/M114V double mutant complexed with Flupyradifurone Descriptor: Acetylcholine-binding protein, Flupyradifurone Authors: Montgomery, M.G. Deposit date: 2021-08-05 Release date: 2022-02-02 Last modified: 2024-01-31 Method: X-RAY DIFFRACTION (2.33 Å) Cite: Structural Biology-Guided Design, Synthesis, and Biological Evaluation of Novel Insect Nicotinic Acetylcholine Receptor Orthosteric Modulators. J.Med.Chem., 65, 2022

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