Loading
PDBj
メニューPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB形式変換不可の PDB エントリー
7M6A
DownloadVisualize
BU of 7m6a by Molmil
High resolution structure of the membrane embedded skeletal muscle ryanodine receptor
分子名称: ADENOSINE-5'-TRIPHOSPHATE, CAFFEINE, CALCIUM ION, ...
著者Melville, Z, Kim, K, Clarke, O.B, Marks, A.R.
登録日2021-03-25
公開日2021-09-08
最終更新日2022-01-19
実験手法ELECTRON MICROSCOPY (3.36 Å)
主引用文献High-resolution structure of the membrane-embedded skeletal muscle ryanodine receptor.
Structure, 30, 2022
7M6L
DownloadVisualize
BU of 7m6l by Molmil
High resolution structure of the membrane embedded skeletal muscle ryanodine receptor
分子名称: ADENOSINE-5'-TRIPHOSPHATE, CAFFEINE, CALCIUM ION, ...
著者Melville, Z, Kim, K, Clarke, O.B, Marks, A.R.
登録日2021-03-25
公開日2021-08-18
最終更新日2022-01-19
実験手法ELECTRON MICROSCOPY (3.98 Å)
主引用文献High-resolution structure of the membrane-embedded skeletal muscle ryanodine receptor.
Structure, 30, 2022
7MD2
DownloadVisualize
BU of 7md2 by Molmil
The F1 region of ammocidin-bound Saccharomyces cerevisiae ATP synthase
分子名称: (3~{E},5~{Z},7~{E},9~{R},10~{S},11~{E},13~{E},15~{E},17~{R},18~{S},20~{S})-20-[(1~{R})-1-[(2~{S},3~{R},4~{R},5~{S},6~{R})-5-[(2~{S},4~{S},5~{S},6~{R})-5-[(2~{S},4~{R},5~{R},6~{R})-4,6-dimethyl-4,5-bis(oxidanyl)oxan-2-yl]oxy-6-methyl-4-oxidanyl-oxan-2-yl]oxy-3-methoxy-6-(3-methoxypropyl)-5-methyl-2,4-bis(oxidanyl)oxan-2-yl]ethyl]-5,18-dimethoxy-3,7,9,11,13,15-hexamethyl-10-[(2~{R},3~{S},4~{R},5~{R},6~{S})-6-methyl-3,4,5-tris(oxidanyl)oxan-2-yl]oxy-17-oxidanyl-1-oxacycloicosa-3,5,7,11,13,15-hexaen-2-one, ADENOSINE-5'-TRIPHOSPHATE, ATP synthase subunit alpha, ...
著者Guo, H, Rubinstein, J.L.
登録日2021-04-03
公開日2021-08-11
最終更新日2024-05-29
実験手法ELECTRON MICROSCOPY (3.1 Å)
主引用文献A Family of Glycosylated Macrolides Selectively Target Energetic Vulnerabilities in Leukemia
Biorxiv, 2021
7MD3
DownloadVisualize
BU of 7md3 by Molmil
The F1 region of apoptolidin-bound Saccharomyces cerevisiae ATP synthase
分子名称: (3~{E},5~{E},7~{E},9~{R},10~{R},11~{E},13~{E},17~{S},18~{S},20~{S})-18-methoxy-20-[(~{R})-[(2~{R},3~{R},4~{S},5~{R},6~{R})-6-[(2~{R})-3-methoxy-2-[(2~{R},4~{S},5~{S},6~{S})-5-[(2~{S},4~{R},5~{R},6~{R})-4-methoxy-6-methyl-5-oxidanyl-oxan-2-yl]oxy-4,6-dimethyl-4-oxidanyl-oxan-2-yl]oxy-propyl]-3,5-dimethyl-2,4-bis(oxidanyl)oxan-2-yl]-oxidanyl-methyl]-10-[(2~{R},3~{S},4~{S},5~{R},6~{S})-5-methoxy-6-methyl-3,4-bis(oxidanyl)oxan-2-yl]oxy-3,5,7,9,13-pentamethyl-17-oxidanyl-1-oxacycloicosa-3,5,7,11,13-pentaen-2-one, ADENOSINE-5'-TRIPHOSPHATE, ATP synthase subunit alpha, ...
著者Guo, H, Rubinstein, J.L.
登録日2021-04-03
公開日2021-08-11
最終更新日2024-05-29
実験手法ELECTRON MICROSCOPY (3.3 Å)
主引用文献A Family of Glycosylated Macrolides Selectively Target Energetic Vulnerabilities in Leukemia
Biorxiv, 2021
7MD7
DownloadVisualize
BU of 7md7 by Molmil
Crystal structure of the Thermus thermophilus 70S ribosome in complex with triphenylphosphonium analog of chloramphenicol CAM-C4-TPP and protein Y (YfiA) at 2.80A resolution
分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, 16S Ribosomal RNA, 23S Ribosomal RNA, ...
著者Chen, C.-W, Pavlova, J.A, Lukianov, D.A, Tereshchenkov, A.G, Makarov, G.I, Khairullina, Z.Z, Tashlitsky, V.N, Paleskava, A, Konevega, A.L, Bogdanov, A.A, Osterman, I.A, Sumbatyan, N.V, Polikanov, Y.S.
登録日2021-04-03
公開日2021-04-21
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Binding and Action of Triphenylphosphonium Analog of Chloramphenicol upon the Bacterial Ribosome.
Antibiotics, 10, 2021
7MDZ
DownloadVisualize
BU of 7mdz by Molmil
80S rabbit ribosome stalled with benzamide-CHX
分子名称: 18S rRNA, 28S rRNA, 40S ribosomal protein S21, ...
著者Koga, Y, Hoang, E.M, Park, Y, Keszei, A.F.A, Murray, J, Shao, S, Liau, B.B.
登録日2021-04-06
公開日2021-09-01
最終更新日2021-09-15
実験手法ELECTRON MICROSCOPY (3.2 Å)
主引用文献Discovery of C13-Aminobenzoyl Cycloheximide Derivatives that Potently Inhibit Translation Elongation.
J.Am.Chem.Soc., 143, 2021
7MF0
DownloadVisualize
BU of 7mf0 by Molmil
Co-crystal structure of PERK with inhibitor (R)-2-amino-N-cyclopropyl-5-(4-(2-(3,5-difluorophenyl)-2-hydroxyacetamido)-2-methylphenyl)nicotinamide
分子名称: 2-amino-N-cyclopropyl-5-(4-{[(2R)-2-(3,5-difluorophenyl)-2-hydroxyacetyl]amino}-2-methylphenyl)pyridine-3-carboxamide, Eukaryotic translation initiation factor 2-alpha kinase 3,Eukaryotic translation initiation factor 2-alpha kinase 3
著者Wiens, B, Koszelak-Rosenblum, M, Surman, M.D, Zhu, G, Mulvihill, M.J.
登録日2021-04-08
公開日2021-05-19
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (2.809 Å)
主引用文献Discovery of 2-amino-3-amido-5-aryl-pyridines as highly potent, orally bioavailable, and efficacious PERK kinase inhibitors.
Bioorg.Med.Chem.Lett., 43, 2021
7MFJ
DownloadVisualize
BU of 7mfj by Molmil
Structural Characterization of Beta Cyanoalanine Synthase from Tetranychus Urticae
分子名称: ACETATE ION, Beta-cyanoalanine synthase, PYRIDOXAL-5'-PHOSPHATE
著者Daneshian, L, Schlachter, C, Dermauw, W, Wybouw, N, Van Leeuwen, T, Chruszcz, M.
登録日2021-04-09
公開日2021-11-24
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (2.351 Å)
主引用文献Structural and functional characterization of beta-cyanoalanine synthase from Tetranychus urticae.
Insect Biochem.Mol.Biol., 142, 2022
7MFM
DownloadVisualize
BU of 7mfm by Molmil
Glutamate synthase, glutamate dehydrogenase counter-enzyme complex
分子名称: FE3-S4 CLUSTER, FLAVIN MONONUCLEOTIDE, FLAVIN-ADENINE DINUCLEOTIDE, ...
著者Jayaraman, V, Lee, D.J, Elad, N, Fraser, J.S, Tawfik, D.S.
登録日2021-04-10
公開日2022-01-05
最終更新日2022-02-16
実験手法ELECTRON MICROSCOPY (2.42 Å)
主引用文献A counter-enzyme complex regulates glutamate metabolism in Bacillus subtilis.
Nat.Chem.Biol., 18, 2022
7MFN
DownloadVisualize
BU of 7mfn by Molmil
N-Acetylmannosamine-6-phosphate 2-epimerase E180A from Staphylococcus aureus (strain MRSA USA300)
分子名称: 1,2-ETHANEDIOL, CHLORIDE ION, CITRIC ACID, ...
著者Currie, M.J, Dobson, R.C.J.
登録日2021-04-10
公開日2022-04-13
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (1.55 Å)
主引用文献N-acetylmannosamine-6-phosphate 2-epimerase uses a novel substrate-assisted mechanism to catalyze amino sugar epimerization.
J.Biol.Chem., 297, 2021
7MFS
DownloadVisualize
BU of 7mfs by Molmil
N-Acetylmannosamine-6-phosphate 2-epimerase from Staphylococcus aureus (strain MRSA USA300) with substrate and product bound
分子名称: CHLORIDE ION, N-acetyl-D-glucosamine-6-phosphate, N-acetylmannosamine-6-phosphate, ...
著者Currie, M.J, Dobson, R.C.J.
登録日2021-04-11
公開日2022-04-13
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (1.51 Å)
主引用文献N-acetylmannosamine-6-phosphate 2-epimerase uses a novel substrate-assisted mechanism to catalyze amino sugar epimerization.
J.Biol.Chem., 297, 2021
7MHE
DownloadVisualize
BU of 7mhe by Molmil
Thioesterase Domain of Human Fatty Acid Synthase (FASN-TE) binding a competitive inhibitor SBP-7957
分子名称: 1,2-ETHANEDIOL, 4-{4-[2-(4-fluorophenyl)-1,3-thiazol-4-yl]benzene-1-sulfonyl}morpholine, Fatty acid synthase
著者Aleshin, A.E, Lambert, L, Liddington, R.C, Cosford, N.
登録日2021-04-15
公開日2022-04-20
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Thioesterase Domain of Human Fatty Acid Synthase (FASN-TE) binding a competitive inhibitor SBP-7635
To Be Published
7MIT
DownloadVisualize
BU of 7mit by Molmil
Vascular KATP channel: Kir6.1 SUR2B propeller-like conformation 1
分子名称: (2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 5-chloro-N-(2-{4-[(cyclohexylcarbamoyl)sulfamoyl]phenyl}ethyl)-2-methoxybenzamide, ...
著者Sung, M.W, Shyng, S.L.
登録日2021-04-17
公開日2021-10-13
最終更新日2023-08-16
実験手法ELECTRON MICROSCOPY (3.4 Å)
主引用文献Vascular K ATP channel structural dynamics reveal regulatory mechanism by Mg-nucleotides.
Proc.Natl.Acad.Sci.USA, 118, 2021
7MIZ
DownloadVisualize
BU of 7miz by Molmil
Atomic structure of cortical microtubule from Toxoplasma gondii
分子名称: GUANOSINE-5'-DIPHOSPHATE, GUANOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, ...
著者Wang, X, Brown, A, Sibley, L.D, Zhang, R.
登録日2021-04-18
公開日2021-06-02
最終更新日2021-06-09
実験手法ELECTRON MICROSCOPY (3.4 Å)
主引用文献Cryo-EM structure of cortical microtubules from human parasite Toxoplasma gondii identifies their microtubule inner proteins.
Nat Commun, 12, 2021
7MKR
DownloadVisualize
BU of 7mkr by Molmil
Crystal structure of the GH12 domain from Acidothermus cellulolyticus GuxA
分子名称: 1,2-ETHANEDIOL, ACETATE ION, CHLORIDE ION, ...
著者Lunin, V.V.
登録日2021-04-26
公開日2022-05-04
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Characterization of the Biomass Degrading Enzyme GuxA from Acidothermus cellulolyticus.
Int J Mol Sci, 23, 2022
7MKS
DownloadVisualize
BU of 7mks by Molmil
Crystal structure of the GH12 domain from Acidothermus cellulolyticus GuxA bound to cellobiose
分子名称: ACETATE ION, CHLORIDE ION, GLYCEROL, ...
著者Lunin, V.V.
登録日2021-04-26
公開日2022-05-04
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献Characterization of the Biomass Degrading Enzyme GuxA from Acidothermus cellulolyticus.
Int J Mol Sci, 23, 2022
7MLY
DownloadVisualize
BU of 7mly by Molmil
Cryo-EM reveals partially and fully assembled native glycine receptors,heteromeric pentamer
分子名称: 3D1 Fab Heavy Chain, 3D1 Fab Light Chain, DECANE, ...
著者Zhu, H, Gouaux, E.
登録日2021-04-29
公開日2021-09-29
最終更新日2021-12-01
実験手法ELECTRON MICROSCOPY (2.7 Å)
主引用文献Architecture and assembly mechanism of native glycine receptors.
Nature, 599, 2021
7MOQ
DownloadVisualize
BU of 7moq by Molmil
The structure of the Tetrahymena thermophila outer dynein arm on doublet microtubule
分子名称: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, Docking complex 1 protein, ...
著者Kubo, S, Yang, S.K, Ichikawa, M, Bui, K.H.
登録日2021-05-03
公開日2021-07-14
最終更新日2024-05-29
実験手法ELECTRON MICROSCOPY (8 Å)
主引用文献Remodeling and activation mechanisms of outer arm dyneins revealed by cryo-EM.
Embo Rep., 22, 2021
7MPI
DownloadVisualize
BU of 7mpi by Molmil
Stm1 bound vacant 80S structure isolated from cbf5-D95A
分子名称: 18S rRNA, 25S rRNA, 40S ribosomal protein S0-A, ...
著者Rai, J, Zhao, Y, Li, H.
登録日2021-05-04
公開日2022-05-11
最終更新日2022-07-20
実験手法ELECTRON MICROSCOPY (3.05 Å)
主引用文献CryoEM structures of pseudouridine-free ribosome suggest impacts of chemical modifications on ribosome conformations.
Structure, 30, 2022
7MPJ
DownloadVisualize
BU of 7mpj by Molmil
Stm1 bound vacant 80S structure isolated from wild-type
分子名称: 18S rRNA, 25S rRNA, 40S ribosomal protein S0-A, ...
著者Rai, J, Zhao, Y, Li, H.
登録日2021-05-04
公開日2022-05-11
最終更新日2023-12-13
実験手法ELECTRON MICROSCOPY (2.7 Å)
主引用文献CryoEM structures of pseudouridine-free ribosome suggest impacts of chemical modifications on ribosome conformations.
Structure, 30, 2022
7MQ8
DownloadVisualize
BU of 7mq8 by Molmil
Cryo-EM structure of the human SSU processome, state pre-A1
分子名称: 18S rRNA, 40S ribosomal protein S11, 40S ribosomal protein S12, ...
著者Vanden Broeck, A, Singh, S, Klinge, S.
登録日2021-05-05
公開日2021-09-22
最終更新日2024-08-28
実験手法ELECTRON MICROSCOPY (3.6 Å)
主引用文献Nucleolar maturation of the human small subunit processome.
Science, 373, 2021
7MQ9
DownloadVisualize
BU of 7mq9 by Molmil
Cryo-EM structure of the human SSU processome, state pre-A1*
分子名称: 18S rRNA, 40S ribosomal protein S11, 40S ribosomal protein S12, ...
著者Vanden Broeck, A, Singh, S, Klinge, S.
登録日2021-05-05
公開日2021-09-22
最終更新日2024-05-29
実験手法ELECTRON MICROSCOPY (3.87 Å)
主引用文献Nucleolar maturation of the human small subunit processome.
Science, 373, 2021
7MQA
DownloadVisualize
BU of 7mqa by Molmil
Cryo-EM structure of the human SSU processome, state post-A1
分子名称: 18S rRNA, 40S ribosomal protein S11, 40S ribosomal protein S12, ...
著者Vanden Broeck, A, Singh, S, Klinge, S.
登録日2021-05-05
公開日2021-09-22
最終更新日2021-09-29
実験手法ELECTRON MICROSCOPY (2.7 Å)
主引用文献Nucleolar maturation of the human small subunit processome.
Science, 373, 2021
7MQT
DownloadVisualize
BU of 7mqt by Molmil
N-Acetylmannosamine-6-phosphate 2-epimerase from Staphylococcus aureus (strain MRSA USA300) with 5-deoxy substrate bound
分子名称: 2-acetamido-2,5-dideoxy-6-O-phosphono-D-lyxo-hexose, CHLORIDE ION, CITRIC ACID, ...
著者Currie, M.J, Dobson, R.C.J.
登録日2021-05-06
公開日2022-04-20
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (1.88 Å)
主引用文献N-acetylmannosamine-6-phosphate 2-epimerase uses a novel substrate-assisted mechanism to catalyze amino sugar epimerization.
J.Biol.Chem., 297, 2021
7MSC
DownloadVisualize
BU of 7msc by Molmil
Mtb 70SIC in complex with MtbEttA at Pre_R0 state
分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ...
著者Cui, Z, Zhang, J.
登録日2021-05-11
公開日2022-02-02
最終更新日2024-05-29
実験手法ELECTRON MICROSCOPY (2.97 Å)
主引用文献Interplay between an ATP-binding cassette F protein and the ribosome from Mycobacterium tuberculosis.
Nat Commun, 13, 2022

224572

件を2024-09-04に公開中

PDB statisticsPDBj update infoContact PDBjnumon