PDB形式変換不可の PDB エントリー

7K52	Near post-translocated non-frameshifting(CCA-A) complex with EF-G and GDPCP (Structure III) 分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... 著者 Demo, G, Loveland, A.B, Svidritskiy, E, Gamper, H.B, Hou, Y.M, Korostelev, A.A. 登録日 2020-09-16 公開日 2021-07-28 最終更新日 2024-05-29 実験手法 ELECTRON MICROSCOPY (3.4 Å) 主引用文献 Structural basis for +1 ribosomal frameshifting during EF-G-catalyzed translocation. Nat Commun, 12, 2021
7K53	Pre-translocation +1-frameshifting(CCC-A) complex (Structure I-FS) 分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... 著者 Demo, G, Loveland, A.B, Svidritskiy, E, Gamper, H.B, Hou, Y.M, Korostelev, A.A. 登録日 2020-09-16 公開日 2021-07-28 最終更新日 2024-05-29 実験手法 ELECTRON MICROSCOPY (3.2 Å) 主引用文献 Structural basis for +1 ribosomal frameshifting during EF-G-catalyzed translocation. Nat Commun, 12, 2021
7K54	Mid-translocated +1-frameshifting(CCC-A) complex with EF-G and GDPCP (Structure II-FS) 分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... 著者 Demo, G, Loveland, A.B, Svidritskiy, E, Gamper, H.B, Hou, Y.M, Korostelev, A.A. 登録日 2020-09-16 公開日 2021-07-28 最終更新日 2024-05-29 実験手法 ELECTRON MICROSCOPY (3.2 Å) 主引用文献 Structural basis for +1 ribosomal frameshifting during EF-G-catalyzed translocation. Nat Commun, 12, 2021
7K55	Near post-translocated +1-frameshifting(CCC-A) complex with EF-G and GDPCP (Structure III-FS) 分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... 著者 Demo, G, Loveland, A.B, Svidritskiy, E, Gamper, H.B, Hou, Y.M, Korostelev, A.A. 登録日 2020-09-16 公開日 2021-07-28 最終更新日 2024-05-29 実験手法 ELECTRON MICROSCOPY (3.3 Å) 主引用文献 Structural basis for +1 ribosomal frameshifting during EF-G-catalyzed translocation. Nat Commun, 12, 2021
7K58	Structure of outer-arm dyneins bound to microtubule with microtubule binding state 1(MTBS-1) 分子名称: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, Dynein heavy chain, ... 著者 Qinhui, R, Kai, Z. 登録日 2020-09-16 公開日 2021-09-29 最終更新日 2021-10-20 実験手法 ELECTRON MICROSCOPY (3.5 Å) 主引用文献 Structures of outer-arm dynein array on microtubule doublet reveal a motor coordination mechanism. Nat.Struct.Mol.Biol., 28, 2021
7K5B	Structure of outer-arm dynein bound to microtubule doublet in microtubule binding state 2 (MTBS-2) 分子名称: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, Dynein heavy chain, ... 著者 Rao, Q, Zhang, K. 登録日 2020-09-16 公開日 2021-09-29 最終更新日 2021-10-20 実験手法 ELECTRON MICROSCOPY (4.5 Å) 主引用文献 Structures of outer-arm dynein array on microtubule doublet reveal a motor coordination mechanism. Nat.Struct.Mol.Biol., 28, 2021
7K6V	Crystal Structure of Virus-like Particles of GII.4 Norovirus Houston virus (HOV) 分子名称: 1,2-ETHANEDIOL, CADMIUM ION, CHLORIDE ION, ... 著者 Hu, L, Prasad, B.V.V. 登録日 2020-09-21 公開日 2022-03-02 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (3 Å) 主引用文献 Crystal structure of GII.4 Norovirus capsid reveals inherent conformational flexibility of the capsid protein To Be Published
7KEK	Structure of the free outer-arm dynein in pre-parallel state 分子名称: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, Dynein alpha heavy chain, ... 著者 Rao, Q, Zhang, K. 登録日 2020-10-11 公開日 2021-09-29 最終更新日 2021-10-20 実験手法 ELECTRON MICROSCOPY (8 Å) 主引用文献 Structures of outer-arm dynein array on microtubule doublet reveal a motor coordination mechanism. Nat.Struct.Mol.Biol., 28, 2021
7KGB	CryoEM structure of A2296-methylated Mycobacterium tuberculosis ribosome bound with SEQ-9 分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... 著者 Cui, Z, Zhang, J. 登録日 2020-10-16 公開日 2022-01-19 最終更新日 2024-05-29 実験手法 ELECTRON MICROSCOPY (2.7 Å) 主引用文献 Discovery of natural-product-derived sequanamycins as potent oral anti-tuberculosis agents. Cell, 2023
7KH1	Baseplate Complex for Myoviridae Phage XM1 分子名称: baseplate organization protein, gp11, baseplate stabilizing protein, ... 著者 Wang, Z, Klose, T, Jiang, W, Kuhn, R.J. 登録日 2020-10-19 公開日 2021-10-27 最終更新日 2024-05-29 実験手法 ELECTRON MICROSCOPY (3.2 Å) 主引用文献 Structure of Vibrio phage XM1, a simple contractile DNA injection machine Biorxiv, 2021
7KIP	A 3.4 Angstrom cryo-EM structure of the human coronavirus spike trimer computationally derived from vitrified NL63 virus particles 分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein, ... 著者 Zhang, K, Li, S, Pintilie, G, Chmielewski, D, Schmid, M, Simmons, G, Jin, J, Chiu, W. 登録日 2020-10-24 公開日 2020-11-11 実験手法 ELECTRON MICROSCOPY (3.39 Å) 主引用文献 A 3.4- angstrom cryo-EM structure of the human coronavirus spike trimer computationally derived from vitrified NL63 virus particles. Biorxiv, 2020
7KJK	The Neck region of Phage XM1 (6-fold symmetry) 分子名称: Collar spike protein, Head completion protein, Tail sheath protein, ... 著者 Wang, Z, Klose, T, Jiang, W, Kuhn, R.J. 登録日 2020-10-26 公開日 2021-11-03 最終更新日 2024-05-29 実験手法 ELECTRON MICROSCOPY (3.6 Å) 主引用文献 Structure of Vibrio phage XM1, a simple contractile DNA injection machine Biorxiv, 2021
7KLN	Myoviridae Phage XM1 Neck Region (12-fold) 分子名称: Head completion protein, gp1, Portal protein 著者 Wang, Z, Klose, T, Jiang, W, Kuhn, R.J. 登録日 2020-10-30 公開日 2021-11-03 最終更新日 2022-05-25 実験手法 ELECTRON MICROSCOPY (3.6 Å) 主引用文献 Structure of Vibrio phage XM1, a simple contractile DNA injection machine Biorxiv, 2021
7KP5	Energetic and structural effects of the Tanford transition on the ligand recognition of bovine Beta-lactoglobulin 分子名称: Beta-lactoglobulin, DODECYL SULFATE 著者 Rodriguez-Hernandez, A, Rodriguez-Romero, A. 登録日 2020-11-10 公開日 2021-01-27 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (2.4 Å) 主引用文献 Energetic and structural effects of the Tanford transition on ligand recognition of bovine beta-lactoglobulin. Arch.Biochem.Biophys., 699, 2021
7KR6	Glycoside hydrolase family 16 endo-glucanase from Bacteroides ovatus in complex with G4G3G-2F-DNP 分子名称: Glycoside hydrolase family 16 protein, beta-D-glucopyranose-(1-4)-beta-D-glucopyranose-(1-3)-2-deoxy-2-fluoro-alpha-D-glucopyranose 著者 Tamura, K, Brumer, H, van Petegem, F. 登録日 2020-11-18 公開日 2021-05-19 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (1.56 Å) 主引用文献 Orthogonal Active-Site Labels for Mixed-Linkage endo-beta-Glucanases. Acs Chem.Biol., 16, 2021
7KTS	Negative stain EM structure of the human SAGA coactivator complex (TRRAP, core, splicing module) 分子名称: Ataxin-7, Isoform 3 of Transcription factor SPT20 homolog, STAGA complex 65 subunit gamma, ... 著者 Herbst, D.A, Esbin, M.N, Nogales, E. 登録日 2020-11-24 公開日 2021-11-10 最終更新日 2024-05-29 実験手法 ELECTRON MICROSCOPY (19.09 Å) 主引用文献 Structure of the human SAGA coactivator complex. Nat.Struct.Mol.Biol., 28, 2021
7KV2	Surface glycan-binding protein A from Bacteroides thetaiotaomicron 分子名称: 1,2-ETHANEDIOL, 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, RagB/SusD family nutrient uptake outer membrane protein, ... 著者 Tamura, K, Brumer, H, Van Petegem, F. 登録日 2020-11-26 公開日 2021-02-17 最終更新日 2024-03-06 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 Distinct protein architectures mediate species-specific beta-glucan binding and metabolism in the human gut microbiota. J.Biol.Chem., 296, 2021
7KV3	Surface glycan-binding protein A from Bacteroides thetaiotaomicron in complex with laminarihexaose 分子名称: RagB/SusD family nutrient uptake outer membrane protein, SULFATE ION, beta-D-glucopyranose-(1-3)-beta-D-glucopyranose-(1-3)-beta-D-glucopyranose-(1-3)-beta-D-glucopyranose-(1-3)-beta-D-glucopyranose-(1-3)-beta-D-glucopyranose 著者 Tamura, K, Brumer, H, Van Petegem, F. 登録日 2020-11-26 公開日 2021-02-17 最終更新日 2024-03-06 実験手法 X-RAY DIFFRACTION (2.05 Å) 主引用文献 Distinct protein architectures mediate species-specific beta-glucan binding and metabolism in the human gut microbiota. J.Biol.Chem., 296, 2021
7KV4	Surface glycan-binding protein A from Bacteroides fluxus 分子名称: SusD family protein 著者 Tamura, K, Brumer, H, Van Petegem, F. 登録日 2020-11-26 公開日 2021-02-17 最終更新日 2024-03-06 実験手法 X-RAY DIFFRACTION (1.84 Å) 主引用文献 Distinct protein architectures mediate species-specific beta-glucan binding and metabolism in the human gut microbiota. J.Biol.Chem., 296, 2021
7KV5	Surface glycan-binding protein B from Bacteroides fluxus 分子名称: DI(HYDROXYETHYL)ETHER, GUANIDINE, PKD domain protein 著者 Tamura, K, Brumer, H, Van Petegem, F. 登録日 2020-11-26 公開日 2021-02-17 最終更新日 2024-03-06 実験手法 X-RAY DIFFRACTION (1.82 Å) 主引用文献 Distinct protein architectures mediate species-specific beta-glucan binding and metabolism in the human gut microbiota. J.Biol.Chem., 296, 2021
7KV6	Surface glycan-binding protein B from Bacteroides fluxus in complex with mixed-linkage glucotriose 分子名称: GUANIDINE, PKD domain protein, beta-D-glucopyranose-(1-4)-beta-D-glucopyranose-(1-3)-beta-D-glucopyranose 著者 Tamura, K, Brumer, H, Van Petegem, F. 登録日 2020-11-26 公開日 2021-02-17 最終更新日 2024-03-06 実験手法 X-RAY DIFFRACTION (1.6 Å) 主引用文献 Distinct protein architectures mediate species-specific beta-glucan binding and metabolism in the human gut microbiota. J.Biol.Chem., 296, 2021
7KV7	Surface glycan-binding protein B from Bacteroides fluxus in complex with laminaritriose 分子名称: 1,2-ETHANEDIOL, DI(HYDROXYETHYL)ETHER, LYSINE, ... 著者 Tamura, K, Brumer, H, Van Petegem, F. 登録日 2020-11-26 公開日 2021-02-17 最終更新日 2024-03-06 実験手法 X-RAY DIFFRACTION (1.76 Å) 主引用文献 Distinct protein architectures mediate species-specific beta-glucan binding and metabolism in the human gut microbiota. J.Biol.Chem., 296, 2021
7KWC	Surface glycan-binding protein B (truncated) from Bacteroides thetaiotaomicron 分子名称: BtSGBP-B_31-285 著者 Tamura, K, Brumer, H, Van Petegem, F. 登録日 2020-11-30 公開日 2021-02-17 最終更新日 2024-03-06 実験手法 X-RAY DIFFRACTION (2.611 Å) 主引用文献 Distinct protein architectures mediate species-specific beta-glucan binding and metabolism in the human gut microbiota. J.Biol.Chem., 296, 2021
7KZM	Outer dynein arm bound to doublet microtubules from C. reinhardtii 分子名称: DC1, DC2, Dynein 11 kDa light chain, ... 著者 Walton, T, Wu, H, Brown, A.B. 登録日 2020-12-10 公開日 2021-01-20 最終更新日 2024-03-06 実験手法 ELECTRON MICROSCOPY (7.5 Å) 主引用文献 Structure of a microtubule-bound axonemal dynein. Nat Commun, 12, 2021
7KZO	Outer dynein arm docking complex bound to doublet microtubules from C. reinhardtii 分子名称: Dynein gamma chain, flagellar outer arm, GUANOSINE-5'-DIPHOSPHATE, ... 著者 Walton, T, Wu, H, Brown, A.B. 登録日 2020-12-10 公開日 2021-01-20 最終更新日 2024-03-06 実験手法 ELECTRON MICROSCOPY (3.3 Å) 主引用文献 Structure of a microtubule-bound axonemal dynein. Nat Commun, 12, 2021

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