PDB形式変換不可の PDB エントリー

7EQ9	Cryo-EM structure of designed protein nanoparticle TIP60 (Truncated Icosahedral Protein composed of 60-mer fusion proteins) 分子名称: TIP60 著者 Obata, J, Kawakami, N, Tsutsumi, A, Miyamoto, K, Kikkawa, M, Arai, R. 登録日 2021-04-30 公開日 2021-09-15 最終更新日 2023-11-29 実験手法 ELECTRON MICROSCOPY (3.3 Å) 主引用文献 Icosahedral 60-meric porous structure of designed supramolecular protein nanoparticle TIP60. Chem.Commun.(Camb.), 57, 2021
7ETJ	C5 portal vertex in the partially-enveloped virion capsid 分子名称: Capsid vertex component 1, Capsid vertex component 2, Large tegument protein deneddylase, ... 著者 Li, Z, Yu, X. 登録日 2021-05-13 公開日 2021-07-14 最終更新日 2025-07-02 実験手法 ELECTRON MICROSCOPY (4 Å) 主引用文献 Structural basis for genome packaging, retention, and ejection in human cytomegalovirus. Nat Commun, 12, 2021
7ETO	C1 CVSC-binding penton vertex in the virion capsid of Human Cytomegalovirus 分子名称: Capsid vertex component 1, Capsid vertex component 2, Large tegument protein deneddylase, ... 著者 Li, Z, Yu, X. 登録日 2021-05-13 公開日 2021-07-14 最終更新日 2025-07-02 実験手法 ELECTRON MICROSCOPY (4 Å) 主引用文献 Structural basis for genome packaging, retention, and ejection in human cytomegalovirus. Nat Commun, 12, 2021
7EVF	Plant growth-promoting factor YxaL mutant from Bacillus velezensis - T175W/S213G/W215A 分子名称: PQQ_3 domain-containing protein 著者 Kim, J, Ha, N.-C. 登録日 2021-05-21 公開日 2022-01-12 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (1.5 Å) 主引用文献 Structure of the plant growth-promoting factor YxaL from the rhizobacterium Bacillus velezensis and its application to protein engineering. Acta Crystallogr D Struct Biol, 78, 2022
7EW5	immune complex of HPV6 L1 pentamer and neutralizing antibody 13H5 分子名称: Heavy chain of 13H5, Light chain of 13H5, Major capsid protein L1 著者 Wang, Z.P, Wang, D.N, Gu, Y, Li, S.W. 登録日 2021-05-24 公開日 2022-06-01 最終更新日 2025-02-26 実験手法 X-RAY DIFFRACTION (3.606 Å) 主引用文献 Rational design of a cross-type HPV vaccine through immunodominance shift guided by a cross-neutralizing antibody. Sci Bull (Beijing), 69, 2024
7EXT	Cryo-EM structure of cyanobacterial phycobilisome from Synechococcus sp. PCC 7002 分子名称: Allophycocyanin alpha subunit, Allophycocyanin beta subunit, Allophycocyanin subunit alpha-B, ... 著者 Zheng, L, Zheng, Z, Li, X, Wang, G, Zhang, K, Wei, P, Zhao, J, Gao, N. 登録日 2021-05-28 公開日 2021-10-06 実験手法 ELECTRON MICROSCOPY (3.5 Å) 主引用文献 Structural insight into the mechanism of energy transfer in cyanobacterial phycobilisomes. Nat Commun, 12, 2021
7EY0	Local CryoEM structure of the SARS-CoV-2 S6PV2 in complex with BD-813 Fab and BD-744 Fab 分子名称: BD-744H, BD-744L, BD-813H, ... 著者 Du, S, Xiao, J. 登録日 2021-05-29 公開日 2021-09-08 最終更新日 2025-06-18 実験手法 ELECTRON MICROSCOPY (3.2 Å) 主引用文献 Structures of SARS-CoV-2 B.1.351 neutralizing antibodies provide insights into cocktail design against concerning variants. Cell Res., 31, 2021
7EY4	Local CryoEM of the SARS-CoV-2 S6PV2 in complex with BD-667 分子名称: BD-667 H, BD-667 L, Spike glycoprotein, ... 著者 Liu, P.L. 登録日 2021-05-29 公開日 2021-09-08 最終更新日 2025-07-02 実験手法 ELECTRON MICROSCOPY (3.69 Å) 主引用文献 Structures of SARS-CoV-2 B.1.351 neutralizing antibodies provide insights into cocktail design against concerning variants. Cell Res., 31, 2021
7EYD	Cryo-EM structure of cyanobacterial phycobilisome from Anabaena sp. PCC 7120 分子名称: Allophycocyanin subunit alpha 1, Allophycocyanin subunit alpha-B, Allophycocyanin subunit beta, ... 著者 Zheng, L, Zheng, Z, Li, X, Wang, G, Zhang, K, Wei, P, Zhao, J, Gao, N. 登録日 2021-05-30 公開日 2021-10-06 実験手法 ELECTRON MICROSCOPY (3.9 Å) 主引用文献 Structural insight into the mechanism of energy transfer in cyanobacterial phycobilisomes. Nat Commun, 12, 2021
7EZX	Structure of the phycobilisome from the red alga Porphyridium purpureum in Middle Light 分子名称: Allophycocyanin alpha subunit, Allophycocyanin beta 18 subunit, Allophycocyanin beta subunit, ... 著者 Ma, J.F, Sui, S.-F. 登録日 2021-06-02 公開日 2022-09-28 最終更新日 2024-04-03 実験手法 ELECTRON MICROSCOPY (3 Å) 主引用文献 The structural basis for light acclimation in phycobilisome light harvesting systems systems in Porphyridium purpureum Commun Biol, 6, 2023
7F25	Crystal structure of SSB from Salmonella enterica serovar Typhimurium LT2. 分子名称: Single-stranded DNA-binding protein 1 著者 Luo, R.H, Huang, Y.H, Huang, C.Y. 登録日 2021-06-10 公開日 2022-05-04 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (2.87 Å) 主引用文献 Crystal Structure of an SSB Protein from Salmonella enterica and Its Inhibition by Flavanonol Taxifolin. Int J Mol Sci, 23, 2022
7F2N	Crystal structure of SSB from Klebsiella pneumonia. 分子名称: Single-stranded DNA-binding protein 著者 Lin, E.S, Huang, Y.H, Huang, C.Y. 登録日 2021-06-11 公開日 2021-11-10 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (2.35 Å) 主引用文献 Characterization of the Chimeric PriB-SSBc Protein. Int J Mol Sci, 22, 2021
7F4V	Cryo-EM structure of a primordial cyanobacterial photosystem I 分子名称: 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE, 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE, BETA-CAROTENE, ... 著者 Kato, K, Hamaguchi, T, Nagao, R, Kawakami, K, Yonekura, K, Shen, J.R. 登録日 2021-06-21 公開日 2022-04-06 最終更新日 2024-10-16 実験手法 ELECTRON MICROSCOPY (2.04 Å) 主引用文献 Structural basis for the absence of low-energy chlorophylls responsible for photoprotection from a primitive cyanobacterial PSI Biorxiv, 2022
7F5S	human delta-METTL18 60S ribosome 分子名称: 28S rRNA, 5.8S rRNA, 5S rRNA, ... 著者 Takahashi, M, Kashiwagi, K, Ito, T. 登録日 2021-06-22 公開日 2022-06-22 実験手法 ELECTRON MICROSCOPY (2.72 Å) 主引用文献 METTL18-mediated histidine methylation of RPL3 modulates translation elongation for proteostasis maintenance. Elife, 11, 2022
7F8I	Crystal structure of HPV6 L1 pentamer 分子名称: Major capsid protein L1 著者 Wang, Z.P, Wang, D.N, Gu, Y, Li, S.W. 登録日 2021-07-02 公開日 2022-07-06 最終更新日 2025-02-26 実験手法 X-RAY DIFFRACTION (3.366 Å) 主引用文献 Rational design of a cross-type HPV vaccine through immunodominance shift guided by a cross-neutralizing antibody. Sci Bull (Beijing), 69, 2024
7F9O	PSI-NDH supercomplex of Barley 分子名称: (3R,3'R,6S)-4,5-DIDEHYDRO-5,6-DIHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL, (3S,5R,6S,3'S,5'R,6'S)-5,6,5',6'-DIEPOXY-5,6,5',6'- TETRAHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL, 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL, ... 著者 Wang, W.D, Shen, L, Tang, K, Han, G.Y, Shen, J.R, Zhang, X. 登録日 2021-07-04 公開日 2021-12-22 最終更新日 2024-10-16 実験手法 ELECTRON MICROSCOPY (4.5 Å) 主引用文献 Architecture of the chloroplast PSI-NDH supercomplex in Hordeum vulgare. Nature, 601, 2022
7FB1	SARS-CoV-2 spike protein in one-RBD open state 分子名称: Spike glycoprotein 著者 Zhu, Y, Tai, L.H, Sun, F. 登録日 2021-07-08 公開日 2022-07-13 最終更新日 2025-06-25 実験手法 ELECTRON MICROSCOPY (3.7 Å) 主引用文献 Novel sites for Cathepsin L cleavage in SARS-CoV-2 spike guide treatment strategies To Be Published
7FCF	Crystal structure of T6SS Hcp protein 分子名称: Fimbrial protein 著者 Jobichen, C, Sivaraman, J. 登録日 2021-07-14 公開日 2022-07-20 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (3.3 Å) 主引用文献 Bacterial antagonism of Chromobacterium haemolyticum and characterization of its putative type VI secretion system. Res.Microbiol., 173, 2022
7FF7	Structure of OmpF2 分子名称: Outer membrane protein F, ZINC ION 著者 Jeong, W.J, Song, W.J. 登録日 2021-07-22 公開日 2022-11-16 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (3.38 Å) 主引用文献 Design and directed evolution of noncanonical beta-stereoselective metalloglycosidases. Nat Commun, 13, 2022
7FFE	Cryo-EM structure of VEEV VLP 分子名称: Capsid protein, Spike glycoprotein E1, Spike glycoprotein E2, ... 著者 Zhang, X, Xiang, Y, Ma, J, Ma, B, Huang, C. 登録日 2021-07-23 公開日 2021-10-20 最終更新日 2024-10-16 実験手法 ELECTRON MICROSCOPY (3.5 Å) 主引用文献 Structure of Venezuelan equine encephalitis virus with its receptor LDLRAD3. Nature, 598, 2021
7FFF	Structure of Venezuelan equine encephalitis virus with the receptor LDLRAD3 分子名称: CALCIUM ION, Capsid protein, Low-density lipoprotein receptor class A domain-containing protein 3, ... 著者 Zhang, X, Xiang, Y, Ma, J, Ma, B, Huang, C. 登録日 2021-07-23 公開日 2021-10-20 最終更新日 2024-11-20 実験手法 ELECTRON MICROSCOPY (3 Å) 主引用文献 Structure of Venezuelan equine encephalitis virus with its receptor LDLRAD3. Nature, 598, 2021
7FFL	Cryo-EM structure of VEEV VLP-LDLRAD3-D1 complex at the 2-fold axes 分子名称: CALCIUM ION, Capsid protein, Low-density lipoprotein receptor class A domain-containing protein 3, ... 著者 Zhang, X, Xiang, Y, Ma, J, Ma, B, Huang, C. 登録日 2021-07-23 公開日 2021-10-20 最終更新日 2024-10-30 実験手法 ELECTRON MICROSCOPY (3.1 Å) 主引用文献 Structure of Venezuelan equine encephalitis virus with its receptor LDLRAD3. Nature, 598, 2021
7FFQ	Cryo-EM structure of VEEV VLP at the 2-fold axes 分子名称: Capsid protein, Spike glycoprotein E1, Spike glycoprotein E2, ... 著者 Zhang, X, Xiang, Y, Ma, J, Ma, B, Huang, C. 登録日 2021-07-23 公開日 2021-10-20 最終更新日 2024-11-13 実験手法 ELECTRON MICROSCOPY (3.5 Å) 主引用文献 Structure of Venezuelan equine encephalitis virus with its receptor LDLRAD3. Nature, 598, 2021
7FIK	The cryo-EM structure of the CR subunit from X. laevis NPC 分子名称: MGC154553 protein, MGC83295 protein, MGC83926 protein, ... 著者 Shi, Y, Huang, G, Zhan, X. 登録日 2021-07-31 公開日 2022-11-09 最終更新日 2024-06-12 実験手法 ELECTRON MICROSCOPY (3.7 Å) 主引用文献 Structure of the cytoplasmic ring of the Xenopus laevis nuclear pore complex. Science, 376, 2022
7FIX	Cryo-EM structure of cyanobacterial photosystem I in the presence of ferredoxin and cytochrome c6 分子名称: 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE, BETA-CAROTENE, CALCIUM ION, ... 著者 Li, J, Kurisu, G. 登録日 2021-08-01 公開日 2022-09-21 最終更新日 2024-11-06 実験手法 ELECTRON MICROSCOPY (1.97 Å) 主引用文献 Structure of cyanobacterial photosystem I complexed with ferredoxin at 1.97 angstrom resolution. Commun Biol, 5, 2022

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