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PDB形式変換不可の PDB エントリー
6DZU
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BU of 6dzu by Molmil
Mechanism of cellular recognition by PCV2
分子名称: Putative capsid protein
著者Khayat, R, Dhindwal, S.
登録日2018-07-05
公開日2018-12-26
最終更新日2024-03-13
実験手法ELECTRON MICROSCOPY (3.3 Å)
主引用文献Structure of Porcine Circovirus 2 at 3.2 Angstroms resolution
To be published
6E0W
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BU of 6e0w by Molmil
Crystal structure of the colanidase tailspike protein gp150 of Phage Phi92 complexed with one repeating unit of colanic acid
分子名称: 1,2-ETHANEDIOL, 4,6-O-[(1R)-1-carboxyethylidene]-D-galactopyranose-(1-4)-beta-D-glucopyranuronic acid-(1-3)-alpha-D-galactopyranose-(1-3)-alpha-L-fucopyranose-(1-4)-alpha-L-fucopyranose-(1-3)-beta-D-glucopyranose, Bacteriophage Phi92 gp150, ...
著者Plattner, M, Browning, C, Gerardy-Schahn, R, Shneider, M.M, Leiman, P.G, Schwarzer, D.
登録日2018-07-07
公開日2019-07-17
最終更新日2025-04-16
実験手法X-RAY DIFFRACTION (1.803 Å)
主引用文献Crystal structure of the colanidase tailspike protein gp150 of Phage Phi92 complexed with one repeating unit of colanic acid
To Be Published
6E2R
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BU of 6e2r by Molmil
Mechanism of cellular recognition by PCV2
分子名称: Capsid protein of PCV2
著者Khayat, R, Dhindwal, S.
登録日2018-07-12
公開日2018-12-26
最終更新日2024-03-20
実験手法ELECTRON MICROSCOPY (2.8 Å)
主引用文献Porcine Circovirus 2 Uses a Multitude of Weak Binding Sites To Interact with Heparan Sulfate, and the Interactions Do Not Follow the Symmetry of the Capsid.
J.Virol., 93, 2019
6E2X
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BU of 6e2x by Molmil
Mechanism of cellular recognition by PCV2
分子名称: 2-O-sulfo-alpha-L-idopyranuronic acid-(1-4)-2-deoxy-6-O-sulfo-2-(sulfoamino)-alpha-D-glucopyranose-(1-4)-2-O-sulfo-alpha-L-idopyranuronic acid-(1-4)-2-deoxy-6-O-sulfo-2-(sulfoamino)-alpha-D-glucopyranose, Capsid protein of PCV2
著者Khayat, R, Dhindwal, S.
登録日2018-07-12
公開日2018-12-26
最終更新日2024-03-13
実験手法ELECTRON MICROSCOPY (3.5 Å)
主引用文献Porcine Circovirus 2 Uses a Multitude of Weak Binding Sites To Interact with Heparan Sulfate, and the Interactions Do Not Follow the Symmetry of the Capsid.
J.Virol., 93, 2019
6E2Z
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BU of 6e2z by Molmil
Mechanism of cellular recognition by PCV2
分子名称: 2-deoxy-6-O-sulfo-2-(sulfoamino)-alpha-D-glucopyranose-(1-4)-2-O-sulfo-alpha-L-idopyranuronic acid-(1-4)-2-deoxy-6-O-sulfo-2-(sulfoamino)-alpha-D-glucopyranose, Capsid protein of PCV2
著者Khayat, R, Dhindwal, S.
登録日2018-07-12
公開日2018-12-26
最終更新日2024-03-13
実験手法ELECTRON MICROSCOPY (3.4 Å)
主引用文献Porcine Circovirus 2 Uses a Multitude of Weak Binding Sites To Interact with Heparan Sulfate, and the Interactions Do Not Follow the Symmetry of the Capsid.
J.Virol., 93, 2019
6E30
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BU of 6e30 by Molmil
Mechanism of cellular recognition by PCV2
分子名称: 2-deoxy-6-O-sulfo-2-(sulfoamino)-alpha-D-glucopyranose-(1-4)-2-O-sulfo-alpha-L-idopyranuronic acid-(1-4)-2-deoxy-6-O-sulfo-2-(sulfoamino)-alpha-D-glucopyranose-(1-4)-2-O-sulfo-alpha-L-idopyranuronic acid-(1-4)-2-deoxy-6-O-sulfo-2-(sulfoamino)-alpha-D-glucopyranose, Capsid protein of PCV2
著者Khayat, R, Dhindwal, S.
登録日2018-07-12
公開日2018-12-26
最終更新日2024-03-13
実験手法ELECTRON MICROSCOPY (3.5 Å)
主引用文献Porcine Circovirus 2 Uses a Multitude of Weak Binding Sites To Interact with Heparan Sulfate, and the Interactions Do Not Follow the Symmetry of the Capsid.
J.Virol., 93, 2019
6E32
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BU of 6e32 by Molmil
Capsid protein of PCV2 with N,O6-DISULFO-GLUCOSAMINE
分子名称: 2-deoxy-6-O-sulfo-2-(sulfoamino)-alpha-D-glucopyranose-(1-4)-2-O-sulfo-alpha-L-idopyranuronic acid-(1-4)-2-deoxy-6-O-sulfo-2-(sulfoamino)-alpha-D-glucopyranose-(1-4)-2-O-sulfo-alpha-L-idopyranuronic acid-(1-4)-2-deoxy-6-O-sulfo-2-(sulfoamino)-alpha-D-glucopyranose, Capsid protein of PCV2
著者Khayat, R, Dhindwal, S.
登録日2018-07-13
公開日2018-12-26
最終更新日2024-03-13
実験手法ELECTRON MICROSCOPY (3.4 Å)
主引用文献Porcine Circovirus 2 Uses a Multitude of Weak Binding Sites To Interact with Heparan Sulfate, and the Interactions Do Not Follow the Symmetry of the Capsid.
J.Virol., 93, 2019
6E34
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BU of 6e34 by Molmil
Capsid protein of PCV2 with N,O6-DISULFO-GLUCOSAMINE and 2-O-sulfo-alpha-L-idopyranuronic acid
分子名称: 2-deoxy-6-O-sulfo-2-(sulfoamino)-alpha-D-glucopyranose-(1-4)-2-O-sulfo-alpha-L-idopyranuronic acid-(1-4)-2-deoxy-6-O-sulfo-2-(sulfoamino)-alpha-D-glucopyranose, Capsid protein of PCV2
著者Khayat, R, Dhindwal, S.
登録日2018-07-13
公開日2018-12-26
最終更新日2024-03-13
実験手法ELECTRON MICROSCOPY (3.6 Å)
主引用文献Porcine Circovirus 2 Uses a Multitude of Weak Binding Sites To Interact with Heparan Sulfate, and the Interactions Do Not Follow the Symmetry of the Capsid.
J.Virol., 93, 2019
6E39
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BU of 6e39 by Molmil
Capsid protein of PCV2 with 2-O-sulfo-alpha-L-idopyranuronic acid and N,O6-DISULFO-GLUCOSAMINE
分子名称: 2-deoxy-6-O-sulfo-2-(sulfoamino)-alpha-D-glucopyranose-(1-4)-2-O-sulfo-alpha-L-idopyranuronic acid, Capsid protein of PCV2
著者Khayat, R, Dhindwal, S.
登録日2018-07-13
公開日2018-12-26
最終更新日2024-03-13
実験手法ELECTRON MICROSCOPY (3.5 Å)
主引用文献Porcine Circovirus 2 Uses a Multitude of Weak Binding Sites To Interact with Heparan Sulfate, and the Interactions Do Not Follow the Symmetry of the Capsid.
J.Virol., 93, 2019
6E8G
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BU of 6e8g by Molmil
CryoEM reconstruction of IST1-CHMP1B copolymer filament bound to ssDNA at 2.9 Angstrom resolution
分子名称: Charged multivesicular body protein 1b, IST1 homolog
著者Talledge, N, Frost, A, McCullough, J.
登録日2018-07-29
公開日2018-08-15
最終更新日2024-03-13
実験手法ELECTRON MICROSCOPY (2.9 Å)
主引用文献The ESCRT-III proteins IST1 and CHMP1B assemble around nucleic acids
Biorxiv, 2018
6E9D
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BU of 6e9d by Molmil
Sub-2 Angstrom Ewald Curvature-Corrected Single-Particle Cryo-EM Reconstruction of AAV-2 L336C
分子名称: Capsid protein VP1
著者Tan, Y.Z, Aiyer, S, Mietzsch, M, Hull, J.A, McKenna, R, Baker, T.S, Agbandje-McKenna, M, Lyumkis, D.
登録日2018-07-31
公開日2018-08-15
最終更新日2024-03-13
実験手法ELECTRON MICROSCOPY (1.86 Å)
主引用文献Sub-2 angstrom Ewald curvature corrected structure of an AAV2 capsid variant.
Nat Commun, 9, 2018
6EK5
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BU of 6ek5 by Molmil
Near-atomic resolution structure of a plant geminivirus determined by electron cryo-microscopy.
分子名称: Capsid protein
著者Grimm, C, Bottcher, B, Hipp, K, Jeske, H.
登録日2017-09-25
公開日2017-10-11
最終更新日2024-07-10
実験手法ELECTRON MICROSCOPY (4.2 Å)
主引用文献Near-Atomic Resolution Structure of a Plant Geminivirus Determined by Electron Cryomicroscopy.
Structure, 25, 2017
6EKC
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BU of 6ekc by Molmil
Crystal structure of the BSD2 homolog of Arabidopsis thaliana bound to the octameric assembly of RbcL from Thermosynechococcus elongatus
分子名称: DnaJ/Hsp40 cysteine-rich domain superfamily protein, Ribulose bisphosphate carboxylase large chain, ZINC ION
著者Aigner, H, Wilson, R.H, Bracher, A, Calisse, L, Bhat, J.Y, Hartl, F.U, Hayer-Hartl, M.
登録日2017-09-26
公開日2017-12-06
最終更新日2024-10-16
実験手法X-RAY DIFFRACTION (2.63 Å)
主引用文献Plant RuBisCo assembly in E. coli with five chloroplast chaperones including BSD2.
Science, 358, 2017
6ELZ
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BU of 6elz by Molmil
State E (TAP-Flag-Ytm1 E80A) - Visualizing the assembly pathway of nucleolar pre-60S ribosomes
分子名称: 25S rRNA (cytosine(2870)-C(5))-methyltransferase, 25S ribosomal RNA, 27S pre-rRNA (guanosine(2922)-2'-O)-methyltransferase, ...
著者Kater, L, Cheng, J, Barrio-Garcia, C, Hurt, E, Beckmann, R.
登録日2017-09-30
公開日2017-12-27
最終更新日2024-10-23
実験手法ELECTRON MICROSCOPY (3.3 Å)
主引用文献Visualizing the Assembly Pathway of Nucleolar Pre-60S Ribosomes.
Cell, 171, 2017
6EM1
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BU of 6em1 by Molmil
State C (Nsa1-TAP Flag-Ytm1) - Visualizing the assembly pathway of nucleolar pre-60S ribosomes
分子名称: 25S ribosomal RNA, 5.8S ribosomal RNA, 60S ribosomal protein L13-A, ...
著者Kater, L, Cheng, J, Barrio-Garcia, C, Hurt, E, Beckmann, R.
登録日2017-10-01
公開日2017-12-27
最終更新日2025-04-09
実験手法ELECTRON MICROSCOPY (3.6 Å)
主引用文献Visualizing the Assembly Pathway of Nucleolar Pre-60S Ribosomes.
Cell, 171, 2017
6ENF
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BU of 6enf by Molmil
Cryo-EM structure of a polyproline-stalled ribosome in the absence of EF-P
分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ...
著者Huter, P, Arenz, S, Wilson, D.N.
登録日2017-10-04
公開日2017-11-22
最終更新日2024-10-23
実験手法ELECTRON MICROSCOPY (3.2 Å)
主引用文献Structural Basis for Polyproline-Mediated Ribosome Stalling and Rescue by the Translation Elongation Factor EF-P.
Mol. Cell, 68, 2017
6ENJ
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BU of 6enj by Molmil
Polyproline-stalled ribosome in the presence of A+P site tRNA and elongation-factor P (EF-P)
分子名称: 16S ribosomal RNA, 23S Ribosomal RNA, 30S ribosomal protein S10, ...
著者Huter, P, Wilson, D.N.
登録日2017-10-05
公開日2017-11-22
最終更新日2025-04-09
実験手法ELECTRON MICROSCOPY (3.7 Å)
主引用文献Structural Basis for Polyproline-Mediated Ribosome Stalling and Rescue by the Translation Elongation Factor EF-P.
Mol. Cell, 68, 2017
6ENU
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BU of 6enu by Molmil
Polyproline-stalled ribosome in the presence of elongation-factor P (EF-P)
分子名称: 16S ribosomal RNA, 23S Ribosomal RNA, 30S ribosomal protein S10, ...
著者Huter, P, Arenz, S, Wilson, D.N.
登録日2017-10-06
公開日2017-11-22
最終更新日2025-04-09
実験手法ELECTRON MICROSCOPY (3.1 Å)
主引用文献Structural Basis for Polyproline-Mediated Ribosome Stalling and Rescue by the Translation Elongation Factor EF-P.
Mol. Cell, 68, 2017
6ERI
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BU of 6eri by Molmil
Structure of the chloroplast ribosome with chl-RRF and hibernation-promoting factor
分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10 alpha, ...
著者Perez Borema, A, Aibara, S, Paul, B, Tobiasson, V, Kimanius, D, Forsberg, B.O, Wallden, K, Lindahl, E, Amunts, A.
登録日2017-10-18
公開日2018-04-18
最終更新日2024-11-13
実験手法ELECTRON MICROSCOPY (3 Å)
主引用文献Structure of the chloroplast ribosome with chl-RRF and hibernation-promoting factor.
Nat Plants, 4, 2018
6FEC
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BU of 6fec by Molmil
Human cap-dependent 48S pre-initiation complex
分子名称: 18S ribosomal RNA, 40S ribosomal protein S10, 40S ribosomal protein S11, ...
著者Schaffitzel, C, Schaffitzel, C.
登録日2017-12-31
公開日2018-03-14
最終更新日2024-10-16
実験手法ELECTRON MICROSCOPY (6.3 Å)
主引用文献Structure of a human cap-dependent 48S translation pre-initiation complex.
Nucleic Acids Res., 46, 2018
6FG3
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BU of 6fg3 by Molmil
Structure of Ryanodine receptor 1 in nanodiscs in the presence of calcium, ATP and ryanodine
分子名称: CALCIUM ION, Ryanodine receptor 1, ZINC ION
著者Willegems, K, Efremov, R.G.
登録日2018-01-09
公開日2018-08-08
最終更新日2024-05-15
実験手法ELECTRON MICROSCOPY (7.3 Å)
主引用文献Influence of Lipid Mimetics on Gating of Ryanodine Receptor.
Structure, 26, 2018
6FKR
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BU of 6fkr by Molmil
Crystal structure of the dolphin proline-rich antimicrobial peptide Tur1A bound to the Thermus thermophilus 70S ribosome
分子名称: 16 ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ...
著者Mardirossian, M, Perebaskine, N, Benincasa, M, Gambato, S, Hofmann, S, Huter, P, Muller, C, Hilpert, K, Innis, C.A, Tossi, A, Wilson, D.N.
登録日2018-01-24
公開日2018-03-28
最終更新日2025-03-12
実験手法X-RAY DIFFRACTION (3.2 Å)
主引用文献The Dolphin Proline-Rich Antimicrobial Peptide Tur1A Inhibits Protein Synthesis by Targeting the Bacterial Ribosome.
Cell Chem Biol, 25, 2018
6FOO
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BU of 6foo by Molmil
Structure of Ryanodine Receptor 1 in nanodiscs in the presence of calcium and ATP
分子名称: Ryanodine receptor 1, ZINC ION
著者Willegems, K, Efremov, R.G.
登録日2018-02-08
公開日2018-08-08
最終更新日2024-05-15
実験手法ELECTRON MICROSCOPY (8.2 Å)
主引用文献Influence of Lipid Mimetics on Gating of Ryanodine Receptor.
Structure, 26, 2018
6FRK
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BU of 6frk by Molmil
Structure of a prehandover mammalian ribosomal SRP and SRP receptor targeting complex
分子名称: 28S ribosomal RNA, 5.8S ribosomal RNA, 5S ribosomal RNA, ...
著者Kobayashi, K, Jomaa, A, Ban, N.
登録日2018-02-16
公開日2018-03-28
最終更新日2025-07-09
実験手法ELECTRON MICROSCOPY (3.7 Å)
主引用文献Structure of a prehandover mammalian ribosomal SRP·SRP receptor targeting complex.
Science, 360, 2018
6FSZ
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BU of 6fsz by Molmil
Structure of the nuclear RNA exosome
分子名称: ATP-dependent RNA helicase DOB1, Exosome complex component CSL4, Exosome complex component MTR3, ...
著者Schuller, J.M, Falk, S, Conti, E.
登録日2018-02-20
公開日2018-03-21
最終更新日2024-05-15
実験手法ELECTRON MICROSCOPY (4.6 Å)
主引用文献Structure of the nuclear exosome captured on a maturing preribosome.
Science, 360, 2018

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