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PDB形式変換不可の PDB エントリー
8QPQ
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C1 turret to capsid interface of full Haloferax tailed virus 1 adjacent to the portal-capsid interface.
分子名称: HK97 gp5-like major capsid protein, MAGNESIUM ION, Prokaryotic polysaccharide deacetylase, ...
著者Zhang, D, Daum, B, Isupov, M.N, McLaren, M.
登録日2023-10-02
公開日2024-10-09
実験手法ELECTRON MICROSCOPY (2.7 Å)
主引用文献CryoEM structure of Haloferax tailed virus 1
To Be Published
8QQ9
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BU of 8qq9 by Molmil
human carbonic anhydrase I in complex with 1-benzyl-3-(1-hydroxy-3,4-dihydro-1H-benzo[c][1,2]oxaborinin-7-yl)thiourea
分子名称: 1-[1,1-bis(oxidanyl)-3,4-dihydro-2,1$l^{4}-benzoxaborinin-7-yl]-3-(phenylmethyl)thiourea, Carbonic anhydrase 1, ZINC ION
著者Angeli, A, Ferraroni, M.
登録日2023-10-04
公開日2024-10-16
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献human carbonic anhydrase I in complex with 1-benzyl-3-(1-hydroxy-3,4-dihydro-1H-benzo[c][1,2]oxaborinin-7-yl)thiourea
To Be Published
8QQA
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human carbonic anhydrase II in complex with Bithionol
分子名称: 1,2-ETHANEDIOL, 2,2'-sulfanediylbis(4,6-dichlorophenol), Carbonic anhydrase 2, ...
著者Angeli, A, Ferraroni, M.
登録日2023-10-04
公開日2024-10-16
実験手法X-RAY DIFFRACTION (1.346 Å)
主引用文献human carbonic anhydrase II in complex with Bithionol
To Be Published
8QQD
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CryoEM structure of the type IV pilin PilA4 from Thermus thermophilus
分子名称: 2-acetamido-2-deoxy-alpha-D-galactopyranose, 2-acetamido-2-deoxy-alpha-D-galactopyranose-(1-3)-2-acetamido-2-deoxy-alpha-D-galactopyranose, 7-Acetamido-5-acetimidoyl-3,5,7,9-tetradeoxy-L-glycero-L-manno-nonulosonic aci-(1-4)-alpha-D-mannopyranose-(1-3)-2-acetamido-2-deoxy-alpha-D-galactopyranose-(1-3)-2-acetamido-2-deoxy-alpha-D-galactopyranose, ...
著者Gold, V.A.M, Neuhaus, A, Gaines, M, Isupov, M, McLaren, M.
登録日2023-10-04
公開日2024-10-16
最終更新日2024-11-06
実験手法ELECTRON MICROSCOPY (2.4 Å)
主引用文献CryoEM structure of the type IV pilin PilA4 from Thermus thermophilus
To Be Published
8QQH
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BU of 8qqh by Molmil
Structure of beta-galactosidase from Desulfurococcus amyloliticus
分子名称: Beta-galactosidase
著者Samygina, V.R, Kil, Y, Sergeev, R.S, Rychkov, G.N.
登録日2023-10-04
公開日2024-08-14
最終更新日2024-11-06
実験手法X-RAY DIFFRACTION (2.15 Å)
主引用文献The archaeal highly thermostable GH35 family beta-galactosidase Da beta Gal has a unique seven domain protein fold.
Febs J., 291, 2024
8QQN
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BU of 8qqn by Molmil
Portal protein of full Haloferax tailed virus 1.
分子名称: HK97 gp6-like/SPP1 gp15-like head-tail connector, MAGNESIUM ION, Portal protein
著者Zhang, D, Daum, B, Isupov, M.N, McLaren, M.
登録日2023-10-05
公開日2024-10-16
実験手法ELECTRON MICROSCOPY (2.342 Å)
主引用文献CryoEM structure of Haloferax tailed virus 1
To Be Published
8QR1
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Cryo-EM structure of the human Tip60 complex
分子名称: Actin, cytoplasmic 1, N-terminally processed, ...
著者Li, C, Smirnova, E, Schnitzler, C, Crucifix, C, Concordet, J.P, Brion, A, Poterszman, A, Schultz, P, Papai, G, Ben-Shem, A.
登録日2023-10-06
公開日2024-08-07
最終更新日2024-10-23
実験手法ELECTRON MICROSCOPY (2.4 Å)
主引用文献Structure of the human TIP60-C histone exchange and acetyltransferase complex.
Nature, 2024
8QRE
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Cholera holotoxin (wildtype)
分子名称: ACETATE ION, Cholera enterotoxin subunit A, Cholera enterotoxin subunit B, ...
著者Mojica, N, Cordara, G, Krengel, U.
登録日2023-10-06
公開日2024-05-15
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Using Vibrio natriegens for High-Yield Production of Challenging Expression Targets and for Protein Perdeuteration.
Biochemistry, 63, 2024
8QRT
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Acyl-ACP thioesterase from Lemna paucicostata in complex with a spirolactam
分子名称: (5~{S})-7-[[2,6-bis(fluoranyl)phenyl]methyl]-3-(3-methylthiophen-2-yl)-1-oxa-2,7-diazaspiro[4.4]non-2-en-6-one, Acyl-acp thioesterase
著者Freigang, J.
登録日2023-10-09
公開日2024-02-21
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Discovery and Optimization of Spirocyclic Lactams that Inhibit Acyl-ACP Thioesterase.
Pest Manag Sci, 2024
8QS0
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Acyl-ACP thioesterase from Lemna paucicostata in complex with a spirolactam
分子名称: (5~{S})-9-[[2,6-bis(fluoranyl)phenyl]methyl]-3-(3-methylthiophen-2-yl)-1-oxa-2,9-diazaspiro[4.5]dec-2-en-10-one, Acyl-acp thioesterase
著者Freigang, J.
登録日2023-10-10
公開日2024-02-21
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Discovery and Optimization of Spirocyclic Lactams that Inhibit Acyl-ACP Thioesterase.
Pest Manag Sci, 2024
8QSI
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BU of 8qsi by Molmil
Portal protein of empty Haloferax tailed virus 1.
分子名称: HK97 gp6-like/SPP1 gp15-like head-tail connector, MAGNESIUM ION, Portal protein
著者Zhang, D, Daum, B, Isupov, M.N, McLaren, M.
登録日2023-10-10
公開日2024-10-23
実験手法ELECTRON MICROSCOPY (2.75 Å)
主引用文献CryoEM structure of Haloferax tailed virus 1
To Be Published
8QSJ
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Human mitoribosomal large subunit assembly intermediate 2 with GTPBP7
分子名称: 16S rRNA, 39S ribosomal protein L10, mitochondrial, ...
著者Ritter, C, Nguyen, T.G, Kummer, E.
登録日2023-10-10
公開日2023-12-13
最終更新日2024-06-26
実験手法ELECTRON MICROSCOPY (3 Å)
主引用文献Structural insights into the role of GTPBP10 in the RNA maturation of the mitoribosome.
Nat Commun, 14, 2023
8QSQ
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BU of 8qsq by Molmil
Locally refined SARS-CoV-2 BA-2.86 Spike receptor binding domain (RBD) complexed with angiotensin converting enzyme 2 (ACE2)
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, Processed angiotensin-converting enzyme 2, Spike protein S2'
著者Ren, J, Stuart, D.I, Duyvesteyn, H.M.E.
登録日2023-10-11
公開日2024-05-08
最終更新日2024-11-13
実験手法ELECTRON MICROSCOPY (3.7 Å)
主引用文献A structure-function analysis shows SARS-CoV-2 BA.2.86 balances antibody escape and ACE2 affinity.
Cell Rep Med, 5, 2024
8QSY
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BU of 8qsy by Molmil
Portal capsid interface of full Haloferax tailed virus 1.
分子名称: Capsid stabilization protein, HK97 gp5-like major capsid protein, HK97 gp6-like/SPP1 gp15-like head-tail connector, ...
著者Zhang, D, Daum, B, Isupov, M.N, McLaren, M.
登録日2023-10-11
公開日2024-10-23
実験手法ELECTRON MICROSCOPY (2.68 Å)
主引用文献CryoEM structure of Haloferax tailed virus 1
To Be Published
8QTZ
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BU of 8qtz by Molmil
Cryo-EM reconstruction of VP5*/VP8* assembly from SA11 Rotavirus Tripsinized Triple Layered Particle
分子名称: Outer capsid protein VP4
著者Asensio-Cob, D, Perez-Mata, C, Gomez-Blanco, J, Vargas, J, Rodriguez, J.M, Luque, D.
登録日2023-10-13
公開日2024-09-25
実験手法ELECTRON MICROSCOPY (4.27 Å)
主引用文献Structural basis of rotavirus spike proteolytic activation
To Be Published
8QUF
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BU of 8quf by Molmil
carbonic anhydrase XII mimic in complex with 2-(3-((N-(4-sulfamoylbenzyl)pyridine-3-sulfonamido)methyl)phenoxy)acetic acid
分子名称: 2-[3-[[pyridin-3-ylsulfonyl-[(4-sulfamoylphenyl)methyl]amino]methyl]phenoxy]ethanoic acid, Carbonic anhydrase 2, DIMETHYL SULFOXIDE, ...
著者Angeli, A, Ferraroni, M.
登録日2023-10-16
公開日2024-10-23
実験手法X-RAY DIFFRACTION (1.141 Å)
主引用文献carbonic anhydrase XII mimic in complex with 2-(3-((N-(4-sulfamoylbenzyl)pyridine-3-sulfonamido)methyl)phenoxy)acetic acid
To Be Published
8QUN
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BU of 8qun by Molmil
human carbonic anhydrase I in complex with 2-((5-cyano-4-hydroxy-6-(p-tolyl)pyrimidin-2-yl)thio)-N-(4-sulfamoylphenyl)acetamide
分子名称: 2-[5-cyano-4-(4-methylphenyl)-6-oxidanyl-pyrimidin-2-yl]sulfanyl-N-(4-sulfamoylphenyl)ethanamide, Carbonic anhydrase 1, DIMETHYL SULFOXIDE, ...
著者Angeli, A, Ferraroni, M.
登録日2023-10-16
公開日2024-10-23
実験手法X-RAY DIFFRACTION (1.606 Å)
主引用文献human carbonic anhydrase I in complex with 2-((5-cyano-4-hydroxy-6-(p-tolyl)pyrimidin-2-yl)thio)-N-(4-sulfamoylphenyl)acetamide
To Be Published
8QV2
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BU of 8qv2 by Molmil
Structure of the native y-Tubulin Ring Complex (yTuRC) capping microtubule minus ends at the spindle pole body
分子名称: GUANOSINE-5'-DIPHOSPHATE, GUANOSINE-5'-TRIPHOSPHATE, Spindle pole body component, ...
著者Dendooven, T, Yatskevich, S, Burt, A, Bellini, D, Kilmartin, J, Barford, D.
登録日2023-10-17
公開日2024-04-24
最終更新日2024-07-31
実験手法ELECTRON MICROSCOPY (9.2 Å)
主引用文献Structure of the native gamma-tubulin ring complex capping spindle microtubules.
Nat.Struct.Mol.Biol., 31, 2024
8QV3
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Structure of the y-Tubulin Small Complex (yTuSC) as part of the native y-Tubulin Ring Complex (yTuRC) capping microtubule minus ends at the spindle pole body
分子名称: GUANOSINE-5'-TRIPHOSPHATE, Spindle pole body component, Spindle pole body component 110, ...
著者Dendooven, T, Yatskevich, S, Burt, A, Bellini, D, Kilmartin, J, Barford, D.
登録日2023-10-17
公開日2024-04-24
最終更新日2024-07-31
実験手法ELECTRON MICROSCOPY (8.2 Å)
主引用文献Structure of the native gamma-tubulin ring complex capping spindle microtubules.
Nat.Struct.Mol.Biol., 31, 2024
8QX4
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Sulfolobus acidocaldarius Archaellum filament.
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 6-deoxy-6-sulfo-beta-D-glucopyranose-(1-3)-[alpha-D-mannopyranose-(1-4)][alpha-D-mannopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Flagellin, ...
著者Isupov, M.N, Gaines, M, McLaren, M, Daum, B.
登録日2023-10-22
公開日2024-10-30
最終更新日2024-11-13
実験手法ELECTRON MICROSCOPY (2.03 Å)
主引用文献Sulfolobus acidocaldarius Archaellum filament.
To Be Published
8QXD
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BU of 8qxd by Molmil
Cryo-EM structure of the cross-exon pre-B complex
分子名称: 116 kDa U5 small nuclear ribonucleoprotein component, NHP2-like protein 1, N-terminally processed, ...
著者Zhang, Z, Kumar, V, Dybkov, O, Will, C.L, Zhong, J, Ludwig, S, Urlaub, H, Kastner, B, Stark, H, Luehrmann, R.
登録日2023-10-24
公開日2024-05-22
最終更新日2024-07-10
実験手法ELECTRON MICROSCOPY (9.6 Å)
主引用文献Structural insights into the cross-exon to cross-intron spliceosome switch.
Nature, 630, 2024
8QYE
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BU of 8qye by Molmil
Catalytic core of endo-alpha-N-acetylgalactosaminidase from Bifidobacterium longum (EngBF) concieved by deep network hallucination: dEngBF4
分子名称: 1,2-ETHANEDIOL, ENDO-ALPHA-N-ACETYLGALACTOSAMINIDASE
著者Aghajari, N.
登録日2023-10-25
公開日2024-03-06
最終更新日2024-10-09
実験手法X-RAY DIFFRACTION (2.05 Å)
主引用文献Carving out a Glycoside Hydrolase Active Site for Incorporation into a New Protein Scaffold Using Deep Network Hallucination.
Acs Synth Biol, 13, 2024
8QYV
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SWR1-hexasome complex
分子名称: ADENOSINE-5'-DIPHOSPHATE, Actin-like protein ARP6, BERYLLIUM TRIFLUORIDE ION, ...
著者Jalal, A.S.B, Wigley, D.B.
登録日2023-10-26
公開日2024-10-02
最終更新日2024-10-30
実験手法ELECTRON MICROSCOPY (3.5 Å)
主引用文献Stabilization of the hexasome intermediate during histone exchange by yeast SWR1 complex.
Mol.Cell, 84, 2024
8QZ0
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SWR1-hexasome-dimer complex
分子名称: ADENOSINE-5'-DIPHOSPHATE, Actin-like protein ARP6, BERYLLIUM TRIFLUORIDE ION, ...
著者Jalal, A.S.B, Wigley, D.B.
登録日2023-10-26
公開日2024-10-02
最終更新日2024-10-30
実験手法ELECTRON MICROSCOPY (3.8 Å)
主引用文献Stabilization of the hexasome intermediate during histone exchange by yeast SWR1 complex.
Mol.Cell, 84, 2024
8QZK
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Catalytic core of endo-alpha-N-acetylgalactosaminidase from Bifidobacterium longum (EngBF) concieved by deep network hallucination: dEngBF4 Hexagonal form
分子名称: ENDO-ALPHA-N-ACETYLGALACTOSAMINIDASE
著者Aghajari, N, Hansen, A.L, Thiesen, F.F, Crehuet, R, Marcos, E, Willemoes, M.
登録日2023-10-27
公開日2024-03-06
最終更新日2024-10-16
実験手法X-RAY DIFFRACTION (3.25 Å)
主引用文献Carving out a Glycoside Hydrolase Active Site for Incorporation into a New Protein Scaffold Using Deep Network Hallucination.
Acs Synth Biol, 13, 2024

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件を2024-11-13に公開中

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