Loading
PDBj
メニューPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB形式変換不可の PDB エントリー
7PSA
DownloadVisualize
BU of 7psa by Molmil
The acetogenin-bound complex I of Mus musculus resolved to 3.4 angstroms
分子名称: (3~{S},5~{S})-5-methyl-3-[(13~{R})-13-oxidanyl-13-[(2~{R},5~{R})-5-[(2~{R},5~{R})-5-[(1~{R})-1-oxidanylundecyl]oxolan-2-yl]oxolan-2-yl]tridecyl]oxolan-2-one, 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE, 1,2-Distearoyl-sn-glycerophosphoethanolamine, ...
著者Grba, D, Hirst, J.
登録日2021-09-22
公開日2022-04-06
実験手法ELECTRON MICROSCOPY (3.4 Å)
主引用文献Cryo-electron microscopy reveals how acetogenins inhibit mitochondrial respiratory complex I.
J.Biol.Chem., 298, 2022
7PSE
DownloadVisualize
BU of 7pse by Molmil
Crystal Structure of a Class D Carbapenemase_K73ALY Complexed with Oxacillin
分子名称: (2R,4S)-5,5-dimethyl-2-[(1R)-1-{[(5-methyl-3-phenyl-1,2-oxazol-4-yl)carbonyl]amino}-2-oxoethyl]-1,3-thiazolidine-4-carb oxylic acid, 1-BUTANOL, Beta-lactamase, ...
著者Zhou, Q, He, Y, Jin, Y.
登録日2021-09-23
公開日2022-10-05
最終更新日2024-03-06
実験手法X-RAY DIFFRACTION (2.32 Å)
主引用文献An Ion-Pair Induced Intermediate Complex Captured in Class D Carbapenemase Reveals Chloride Ion as a Janus Effector Modulating Activity
Acs Cent.Sci., 2023
7PSF
DownloadVisualize
BU of 7psf by Molmil
Crystal Structure of a Class D Carbapenemase Complexed with Imipenem
分子名称: 1-BUTANOL, BROMIDE ION, Beta-lactamase, ...
著者Zhou, Q, He, Y, Jin, Y.
登録日2021-09-23
公開日2022-10-05
最終更新日2024-03-06
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献An Ion-Pair Induced Intermediate Complex Captured in Class D Carbapenemase Reveals Chloride Ion as a Janus Effector Modulating Activity
Acs Cent.Sci., 2023
7PT6
DownloadVisualize
BU of 7pt6 by Molmil
Structure of MCM2-7 DH complexed with Cdc7-Dbf4 in the presence of ATPgS, state III
分子名称: ADENOSINE-5'-DIPHOSPHATE, Cell division control protein 7, DDK kinase regulatory subunit DBF4, ...
著者Saleh, A, Noguchi, Y, Aramayo, R, Ivanova, M.E, Speck, C.
登録日2021-09-26
公開日2022-06-08
実験手法ELECTRON MICROSCOPY (3.2 Å)
主引用文献The structural basis of Cdc7-Dbf4 kinase dependent targeting and phosphorylation of the MCM2-7 double hexamer.
Nat Commun, 13, 2022
7PT7
DownloadVisualize
BU of 7pt7 by Molmil
Structure of MCM2-7 DH complexed with Cdc7-Dbf4 in the presence of ADP:BeF3, state I
分子名称: ADENOSINE-5'-DIPHOSPHATE, BERYLLIUM TRIFLUORIDE ION, Cell division control protein 7, ...
著者Saleh, A, Noguchi, Y, Aramayo, R, Ivanova, M.E, Speck, C.
登録日2021-09-26
公開日2022-06-08
実験手法ELECTRON MICROSCOPY (3.8 Å)
主引用文献The structural basis of Cdc7-Dbf4 kinase dependent targeting and phosphorylation of the MCM2-7 double hexamer.
Nat Commun, 13, 2022
7PTZ
DownloadVisualize
BU of 7ptz by Molmil
High resolution X-ray structure of E. coli expressed Lentinus similis LPMO.
分子名称: Auxiliary activity 9, CHLORIDE ION, COPPER (II) ION
著者Banerjee, S, Muderspach, S.J, Tandrup, T, Ipsen, J.O, Hernandez-Rollan, C, Norholm, H.H.M, Johansen, K.S, Lo Leggio, L.
登録日2021-09-27
公開日2022-03-16
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (1.093 Å)
主引用文献Protonation State of an Important Histidine from High Resolution Structures of Lytic Polysaccharide Monooxygenases.
Biomolecules, 12, 2022
7PU1
DownloadVisualize
BU of 7pu1 by Molmil
High resolution X-ray structure of Thermoascus aurantiacus LPMO
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, CHLORIDE ION, COPPER (II) ION, ...
著者Banerjee, S, Frandsen, K.E.H, Singh, R.K, Bjerrum, M.J, Lo Leggio, L.
登録日2021-09-28
公開日2022-03-16
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (1.06 Å)
主引用文献Protonation State of an Important Histidine from High Resolution Structures of Lytic Polysaccharide Monooxygenases.
Biomolecules, 12, 2022
7PUA
DownloadVisualize
BU of 7pua by Molmil
Middle assembly intermediate of the Trypanosoma brucei mitoribosomal small subunit
分子名称: 30S Ribosomal protein S17, putative, 30S ribosomal protein S8, ...
著者Lenarcic, T, Leibundgut, M, Saurer, M, Ramrath, D.J.F, Fluegel, T, Boehringer, D, Ban, N.
登録日2021-09-29
公開日2022-03-02
実験手法ELECTRON MICROSCOPY (3.6 Å)
主引用文献Mitoribosomal small subunit maturation involves formation of initiation-like complexes.
Proc.Natl.Acad.Sci.USA, 119, 2022
7PUB
DownloadVisualize
BU of 7pub by Molmil
Late assembly intermediate of the Trypanosoma brucei mitoribosomal small subunit
分子名称: 30S Ribosomal protein S17, putative, 30S ribosomal protein S8, ...
著者Lenarcic, T, Leibundgut, M, Saurer, M, Ramrath, D.J.F, Fluegel, T, Boehringer, D, Ban, N.
登録日2021-09-29
公開日2022-05-04
実験手法ELECTRON MICROSCOPY (3.7 Å)
主引用文献Mitoribosomal small subunit maturation involves formation of initiation-like complexes.
Proc.Natl.Acad.Sci.USA, 119, 2022
7PUS
DownloadVisualize
BU of 7pus by Molmil
ERK5 in complex with Pyrrole Carboxamide scaffold
分子名称: 4-[3,6-bis(chloranyl)-2-fluoranyl-phenyl]carbonyl-~{N}-(1-methylpyrazol-4-yl)-1~{H}-pyrrole-2-carboxamide, Mitogen-activated protein kinase 7
著者Tucker, J.A, Martin, M.P, Endicott, J.A, Noble, M.E.N.
登録日2021-09-30
公開日2022-05-11
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (2.59 Å)
主引用文献Parallel Optimization of Potency and Pharmacokinetics Leading to the Discovery of a Pyrrole Carboxamide ERK5 Kinase Domain Inhibitor.
J.Med.Chem., 65, 2022
7PVI
DownloadVisualize
BU of 7pvi by Molmil
dTDP-sugar epimerase
分子名称: CITRATE ANION, SODIUM ION, alpha-D-xylopyranose, ...
著者Cross, A.R, Harmer, N.J, Isupov, M.N.
登録日2021-10-04
公開日2022-04-20
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (1.434 Å)
主引用文献Spinning sugars in antigen biosynthesis: characterization of the Coxiella burnetii and Streptomyces griseus TDP-sugar epimerases.
J.Biol.Chem., 298, 2022
7PWB
DownloadVisualize
BU of 7pwb by Molmil
dTDP-sugar epimerase from Coxiella burnetii in complex with dTDP
分子名称: 1,2-ETHANEDIOL, CITRIC ACID, THYMIDINE-5'-DIPHOSPHATE, ...
著者Cross, A.R, Harmer, N.J, Isupov, M.N.
登録日2021-10-06
公開日2022-04-20
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (1.87 Å)
主引用文献Spinning sugars in antigen biosynthesis: characterization of the Coxiella burnetii and Streptomyces griseus TDP-sugar epimerases.
J.Biol.Chem., 298, 2022
7PWG
DownloadVisualize
BU of 7pwg by Molmil
Cryo-EM structure of large subunit of Giardia lamblia ribosome at 2.7 A resolution
分子名称: 60S ribosomal protein L13, 60S ribosomal protein L18a, 60S ribosomal protein L27, ...
著者Hiregange, D.G, Rivalta, A, Bose, T, Breiner-Goldstein, E, Samiya, S, Cimicata, G, Kulakova, L, Zimmerman, E, Bashan, A, Herzberg, O, Yonath, A.
登録日2021-10-06
公開日2022-04-20
実験手法ELECTRON MICROSCOPY (2.75 Å)
主引用文献Cryo-EM structure of the ancient eukaryotic ribosome from the human parasite Giardia lamblia.
Nucleic Acids Res., 50, 2022
7PWH
DownloadVisualize
BU of 7pwh by Molmil
Structure of the dTDP-sugar epimerase StrM
分子名称: 1,2-ETHANEDIOL, CHLORIDE ION, THYMIDINE-5'-DIPHOSPHATE, ...
著者Cross, A.R, Harmer, N.J, Isupov, M.N.
登録日2021-10-06
公開日2022-04-20
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Spinning sugars in antigen biosynthesis: characterization of the Coxiella burnetii and Streptomyces griseus TDP-sugar epimerases.
J.Biol.Chem., 298, 2022
7PWI
DownloadVisualize
BU of 7pwi by Molmil
Structure of the dTDP-sugar epimerase StrM
分子名称: 1,2-ETHANEDIOL, CALCIUM ION, dTDP-4-keto-rhamnose 3,5-epimerase,dTDP-4-dehydrorhamnose 3,5-epimerase
著者Cross, A.R, Harmer, N.J, Isupov, M.N.
登録日2021-10-06
公開日2022-04-20
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (1.326 Å)
主引用文献Spinning sugars in antigen biosynthesis: characterization of the Coxiella burnetii and Streptomyces griseus TDP-sugar epimerases.
J.Biol.Chem., 298, 2022
7PWJ
DownloadVisualize
BU of 7pwj by Molmil
dUTPase from human in complex with Stl
分子名称: 1,2-ETHANEDIOL, Deoxyuridine 5'-triphosphate nucleotidohydrolase, mitochondrial, ...
著者Sanz-Frasquet, C, Marina, A.
登録日2021-10-06
公開日2022-12-28
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (1.944 Å)
主引用文献The Bacteriophage-Phage-Inducible Chromosomal Island Arms Race Designs an Interkingdom Inhibitor of dUTPases.
Microbiol Spectr, 11, 2023
7PWO
DownloadVisualize
BU of 7pwo by Molmil
Cryo-EM structure of Giardia lamblia ribosome at 2.75 A resolution
分子名称: 40S ribosomal protein S21, 40S ribosomal protein S26, 40S ribosomal protein S30, ...
著者Hiregange, D.G, Rivalta, A, Bose, T, Breiner-Goldstein, E, Samiya, S, Cimicata, G, Kulakova, L, Zimmerman, E, Bashan, A, Herzberg, O, Yonath, A.
登録日2021-10-07
公開日2022-04-20
最終更新日2024-04-24
実験手法ELECTRON MICROSCOPY (2.75 Å)
主引用文献Cryo-EM structure of the ancient eukaryotic ribosome from the human parasite Giardia lamblia.
Nucleic Acids Res., 50, 2022
7PWX
DownloadVisualize
BU of 7pwx by Molmil
dUTPase from M. tuberculosis in complex with Stl
分子名称: 1,2-ETHANEDIOL, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, DI(HYDROXYETHYL)ETHER, ...
著者Marina, A, Sanz-Frasquet, C.
登録日2021-10-07
公開日2022-12-28
最終更新日2024-06-19
実験手法X-RAY DIFFRACTION (2.75 Å)
主引用文献The Bacteriophage-Phage-Inducible Chromosomal Island Arms Race Designs an Interkingdom Inhibitor of dUTPases.
Microbiol Spectr, 11, 2023
7PX5
DownloadVisualize
BU of 7px5 by Molmil
ATAD2 in complex with 1-Methyl-2-quinolone
分子名称: 1,2-ETHANEDIOL, 1-METHYLQUINOLIN-2(1H)-ONE, ATPase family AAA domain-containing protein 2, ...
著者Martin, M.P, Noble, M.E.N.
登録日2021-10-07
公開日2022-11-02
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (2.18 Å)
主引用文献Exiting the tunnel of uncertainty: crystal soak to validated hit.
Acta Crystallogr D Struct Biol, 78, 2022
7PX9
DownloadVisualize
BU of 7px9 by Molmil
Substrate-engaged mycobacterial Proteasome-associated ATPase - focused 3D refinement (state A)
分子名称: AAA ATPase forming ring-shaped complexes, ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, ...
著者Jomaa, A, Kavalchuk, M, Weber-Ban, E.
登録日2021-10-08
公開日2022-01-19
最終更新日2022-01-26
実験手法ELECTRON MICROSCOPY (3.8 Å)
主引用文献Structural basis of prokaryotic ubiquitin-like protein engagement and translocation by the mycobacterial Mpa-proteasome complex.
Nat Commun, 13, 2022
7PXB
DownloadVisualize
BU of 7pxb by Molmil
Substrate-engaged mycobacterial Proteasome-associated ATPase - focused 3D refinement (state B)
分子名称: AAA ATPase forming ring-shaped complexes, ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, ...
著者Jomaa, A, Kavalchuk, M, Weber-Ban, E.
登録日2021-10-08
公開日2022-01-19
最終更新日2022-01-26
実験手法ELECTRON MICROSCOPY (4 Å)
主引用文献Structural basis of prokaryotic ubiquitin-like protein engagement and translocation by the mycobacterial Mpa-proteasome complex.
Nat Commun, 13, 2022
7PXC
DownloadVisualize
BU of 7pxc by Molmil
Substrate-engaged mycobacterial Proteasome-associated ATPase in complex with open-gate 20S CP - composite map (state A)
分子名称: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, ...
著者Jomaa, A, Kavalchuk, M, Weber-Ban, E.
登録日2021-10-08
公開日2022-01-19
最終更新日2022-01-26
実験手法ELECTRON MICROSCOPY (3.84 Å)
主引用文献Structural basis of prokaryotic ubiquitin-like protein engagement and translocation by the mycobacterial Mpa-proteasome complex.
Nat Commun, 13, 2022
7PXD
DownloadVisualize
BU of 7pxd by Molmil
Substrate-engaged mycobacterial Proteasome-associated ATPase in complex with open-gate 20S CP - composite map (state B)
分子名称: AAA ATPase forming ring-shaped complexes, ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, ...
著者Jomaa, A, Kavalchuk, M, Weber-Ban, E.
登録日2021-10-08
公開日2022-01-19
最終更新日2022-01-26
実験手法ELECTRON MICROSCOPY (4 Å)
主引用文献Structural basis of prokaryotic ubiquitin-like protein engagement and translocation by the mycobacterial Mpa-proteasome complex.
Nat Commun, 13, 2022
7PZ1
DownloadVisualize
BU of 7pz1 by Molmil
Structure of the mouse 8-oxoguanine DNA Glycosylase mOGG1 in complex with ligand TH8535
分子名称: 1,2-ETHANEDIOL, 4-(4-bromanyl-2-oxidanylidene-3~{H}-benzimidazol-1-yl)-~{N}-(3-methoxy-4-methyl-phenyl)piperidine-1-carboxamide, GLYCEROL, ...
著者Scaletti, E.R, Helleday, T, Stenmark, P.
登録日2021-10-11
公開日2022-11-02
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (2.45 Å)
主引用文献Optimization of N-Piperidinyl-Benzimidazolone Derivatives as Potent and Selective Inhibitors of 8-Oxo-Guanine DNA Glycosylase 1.
Chemmedchem, 18, 2023
7PZG
DownloadVisualize
BU of 7pzg by Molmil
Phocaeicola vulgatus sialic acid esterase at 1.44 Angstrom resolution
分子名称: 1,2-ETHANEDIOL, Lysophospholipase L1, MAGNESIUM ION, ...
著者Scott, H, Armstrong, Z, Davies, G.J.
登録日2021-10-12
公開日2022-05-25
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (1.44 Å)
主引用文献The structure of Phocaeicola vulgatus sialic acid acetylesterase.
Acta Crystallogr D Struct Biol, 78, 2022

222415

件を2024-07-10に公開中

PDB statisticsPDBj update infoContact PDBjnumon