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PDB形式変換不可の PDB エントリー
7OMS
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BU of 7oms by Molmil
Bs164 in complex with mannocyclophellitol aziridine
分子名称: (1~{R},2~{R},3~{S},4~{R},5~{R},6~{R})-5-(hydroxymethyl)-7-azabicyclo[4.1.0]heptane-2,3,4-triol, 1,2-ETHANEDIOL, CHLORIDE ION, ...
著者McGregor, N, Beenakker, T, Kuo, C.L, Wong, C.S, Offren, W.A, Armstrong, Z, Codee, J.D.C, Aerts, J.M.F.G, Florea, B.I, Overkleeft, H, Davies, G.J.
登録日2021-05-24
公開日2022-02-02
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (2.05 Å)
主引用文献Synthesis of broad-specificity activity-based probes for exo -beta-mannosidases.
Org.Biomol.Chem., 20, 2022
7OMU
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BU of 7omu by Molmil
Thermosipho africanus DarTG in complex with ADP-ribose
分子名称: ADENOSINE-5-DIPHOSPHORIBOSE, Macro domain-containing protein
著者Ariza, A.
登録日2021-05-24
公開日2021-06-23
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (2.96 Å)
主引用文献Molecular basis for DarT ADP-ribosylation of a DNA base.
Nature, 596, 2021
7OMV
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Thermus sp. 2.9 DarT
分子名称: CHLORIDE ION, DarT domain-containing protein, THIOCYANATE ION
著者Schuller, M, Ariza, A.
登録日2021-05-24
公開日2021-06-23
最終更新日2024-05-01
実験手法X-RAY DIFFRACTION (1.29 Å)
主引用文献Molecular basis for DarT ADP-ribosylation of a DNA base.
Nature, 596, 2021
7OMW
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BU of 7omw by Molmil
Thermus sp. 2.9 DarT in complex with NAD+
分子名称: DarT domain-containing protein, GLYCEROL, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, ...
著者Schuller, M, Ariza, A.
登録日2021-05-24
公開日2021-06-23
最終更新日2024-05-01
実験手法X-RAY DIFFRACTION (1.3 Å)
主引用文献Molecular basis for DarT ADP-ribosylation of a DNA base.
Nature, 596, 2021
7OMX
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Thermus sp. 2.9 DarT in complex with carba-NAD+
分子名称: CARBA-NICOTINAMIDE-ADENINE-DINUCLEOTIDE, DarT domain-containing protein, THIOCYANATE ION
著者Schuller, M, Ariza, A.
登録日2021-05-24
公開日2021-06-23
最終更新日2024-05-01
実験手法X-RAY DIFFRACTION (1.52 Å)
主引用文献Molecular basis for DarT ADP-ribosylation of a DNA base.
Nature, 596, 2021
7OMY
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Thermus sp. 2.9 DarT in complex with carba-NAD+ and ssDNA
分子名称: CARBA-NICOTINAMIDE-ADENINE-DINUCLEOTIDE, DNA (5'-D(*AP*TP*GP*TP*C)-3'), DarT domain-containing protein, ...
著者Schuller, M, Ariza, A.
登録日2021-05-24
公開日2021-06-23
最終更新日2024-05-01
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Molecular basis for DarT ADP-ribosylation of a DNA base.
Nature, 596, 2021
7OMZ
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BU of 7omz by Molmil
Thermus sp. 2.9 DarT in complex with ADP-ribosylated ssDNA and nicotinamide
分子名称: DNA (5'-D(*AP*TP*GP*TP*C)-3'), DarT domain-containing protein, NICOTINAMIDE, ...
著者Schuller, M, Ariza, A.
登録日2021-05-24
公開日2021-06-23
最終更新日2024-05-01
実験手法X-RAY DIFFRACTION (1.66 Å)
主引用文献Molecular basis for DarT ADP-ribosylation of a DNA base.
Nature, 596, 2021
7ON0
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Thermus sp. 2.9 DarT in complex with ADP-ribosylated ssDNA
分子名称: DNA (5'-D(*AP*TP*GP*TP*C)-3'), DarT domain-containing protein, [(2R,3S,4R,5R)-5-(6-AMINOPURIN-9-YL)-3,4-DIHYDROXY-OXOLAN-2-YL]METHYL [HYDROXY-[[(2R,3S,4R,5S)-3,4,5-TRIHYDROXYOXOLAN-2-YL]METHOXY]PHOSPHORYL] HYDROGEN PHOSPHATE
著者Schuller, M, Ariza, A.
登録日2021-05-24
公開日2021-06-23
最終更新日2024-05-01
実験手法X-RAY DIFFRACTION (1.46 Å)
主引用文献Molecular basis for DarT ADP-ribosylation of a DNA base.
Nature, 596, 2021
7ONP
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Wild type carbonic anhydrase II with bound IrCp* complex to generate an artificial transfer hydrogenase (ATHase)
分子名称: 4-[2-(9-chloranyl-2',3',4',5',6'-pentamethyl-4-nitro-7-oxidanylidene-spiro[1$l^{4},8-diaza-9$l^{8}-iridabicyclo[4.3.0]nona-1,3,5-triene-9,1'-1$l^{8}-iridapentacyclo[2.2.0.0^{1,3}.0^{1,5}.0^{2,6}]hexane]-8-yl)ethyl]benzenesulfonamide, ACETATE ION, Carbonic anhydrase 2, ...
著者Stein, A, Dongping, C, Cotelle, Y, Rebelein, J.G, Ward, T.R.
登録日2021-05-25
公開日2021-12-01
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (1.408 Å)
主引用文献A Dual Anchoring Strategy for the Directed Evolution of Improved Artificial Transfer Hydrogenases Based on Carbonic Anhydrase.
Acs Cent.Sci., 7, 2021
7OQD
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BU of 7oqd by Molmil
A single sulfatase is required for metabolism of colonic mucin O-glycans and intestinal colonization by a symbiotic human gut bacterium (BT1636-S1_20)
分子名称: 3-O-sulfo-beta-D-galactopyranose, Arylsulfatase, CALCIUM ION
著者Sofia de Jesus Vaz Luis, A, Basle, A, Martens, E.C, Cartmell, A.
登録日2021-06-03
公開日2021-10-27
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献A single sulfatase is required to access colonic mucin by a gut bacterium.
Nature, 598, 2021
7OQV
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Crystal structure of the polymerising VEL domain of VIN3 (I575D mutant)
分子名称: Protein VERNALIZATION INSENSITIVE 3
著者Fiedler, M, Franco-Echevarria, E, Dean, C, Bienz, M.
登録日2021-06-04
公開日2022-11-09
最終更新日2022-11-23
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Head-to-tail polymerization by VEL proteins underpins cold-induced Polycomb silencing in flowering control.
Cell Rep, 41, 2022
7OR6
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BU of 7or6 by Molmil
The crystal structure of the domain-swapped dimer of onconase
分子名称: Protein P-30
著者Merlino, A, Loreto, D.
登録日2021-06-04
公開日2021-10-06
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (2.12 Å)
主引用文献The crystal structure of the domain-swapped dimer of onconase highlights some catalytic and antitumor activity features of the enzyme.
Int.J.Biol.Macromol., 191, 2021
7ORD
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BU of 7ord by Molmil
The crystal structure of the domain-swapped dimer of onconase (2)
分子名称: ACETATE ION, Protein P-30, SULFATE ION
著者Merlino, A, Loreto, D.
登録日2021-06-05
公開日2021-10-06
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (2.14 Å)
主引用文献The crystal structure of the domain-swapped dimer of onconase highlights some catalytic and antitumor activity features of the enzyme.
Int.J.Biol.Macromol., 191, 2021
7ORP
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BU of 7orp by Molmil
crystal structure of human carbonic anhydrase II in complex with 4-((2-hydroxy-3-((3,4,5-trimethoxyphenyl)tellanyl)propyl)selanyl)benzenesulfonamide
分子名称: 4-[(2R)-2-oxidanyl-3-(3,4,5-trimethylphenyl)tellanyl-propyl]selanylbenzenesulfonamide, 4-[(2S)-2-oxidanyl-3-(3,4,5-trimethoxyphenyl)tellanyl-propyl]selanylbenzenesulfonamide, Carbonic anhydrase 2, ...
著者Angeli, A, Ferraroni, M.
登録日2021-06-06
公開日2022-06-22
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (1.43 Å)
主引用文献Chalcogenides-incorporating carbonic anhydrase inhibitors concomitantly reverted oxaliplatin-induced neuropathy and enhanced antiproliferative action.
Eur.J.Med.Chem., 225, 2021
7ORQ
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BU of 7orq by Molmil
crystal structure of human carbonic anhydrase II in complex with 4-((3-(butylselanyl)-2-hydroxypropyl)selanyl)benzenesulfonamide
分子名称: 4-[(2R)-3-butylselanyl-2-oxidanyl-propyl]selanylbenzenesulfonamide, 4-[(2S)-3-butylselanyl-2-oxidanyl-propyl]selanylbenzenesulfonamide, Carbonic anhydrase 2, ...
著者Angeli, A, Ferraroni, M.
登録日2021-06-06
公開日2022-06-22
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (1.43 Å)
主引用文献Chalcogenides-incorporating carbonic anhydrase inhibitors concomitantly reverted oxaliplatin-induced neuropathy and enhanced antiproliferative action.
Eur.J.Med.Chem., 225, 2021
7ORX
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Rhodococcus jostii RHA1 thiamine diphosphate-dependent 4-hydroxybenzoylformate decarboxylase
分子名称: Probable benzoylformate decarboxylase, SODIUM ION, THIAMINE DIPHOSPHATE
著者Wilkinson, R.C, Fulop, V.
登録日2021-06-06
公開日2021-06-16
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Characterization of Thiamine Diphosphate-Dependent 4-Hydroxybenzoylformate Decarboxylase Enzymes from
Biochemistry, 58, 2019
7OS3
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BU of 7os3 by Molmil
Crystal structure of Rhizobium etli inducible L-asparaginase ReAV solved by S-SAD (orthorhombic form START)
分子名称: CHLORIDE ION, L-asparaginase II protein, ZINC ION
著者Gilski, M, Loch, J.I, Imiolczyk, B, Jaskolski, M.
登録日2021-06-07
公開日2021-11-24
最終更新日2024-06-19
実験手法X-RAY DIFFRACTION (2.177 Å)
主引用文献Crystal structures of the elusive Rhizobium etli L-asparaginase reveal a peculiar active site.
Nat Commun, 12, 2021
7OS5
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Crystal structure of Rhizobium etli inducible L-asparaginase ReAV (orthorhombic form OP)
分子名称: 1,2-ETHANEDIOL, CHLORIDE ION, L-asparaginase, ...
著者Loch, J.I, Imiolczyk, B, Gilski, M, Jaskolski, M.
登録日2021-06-07
公開日2021-11-24
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (1.293 Å)
主引用文献Crystal structures of the elusive Rhizobium etli L-asparaginase reveal a peculiar active site.
Nat Commun, 12, 2021
7OS6
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Crystal structure of Rhizobium etli inducible L-asparaginase ReAV (monoclinic form MP1)
分子名称: 1,2-ETHANEDIOL, CHLORIDE ION, ETHANOL, ...
著者Loch, J.I, Imiolczyk, B, Gilski, M, Jaskolski, M.
登録日2021-06-07
公開日2021-11-24
最終更新日2023-04-26
実験手法X-RAY DIFFRACTION (1.43 Å)
主引用文献Crystal structures of the elusive Rhizobium etli L-asparaginase reveal a peculiar active site.
Nat Commun, 12, 2021
7OS9
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Crystal Structure of Domain Swapped Trp Repressor V58I Variant with purification tag
分子名称: IMIDAZOLE, Trp operon repressor
著者Sprenger, J, Lawson, C.L, Lo Leggio, L, Von Wachenfeldt, C, Carey, J.
登録日2021-06-08
公開日2021-07-14
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (2.45 Å)
主引用文献Crystal structures of Val58Ile tryptophan repressor in a domain-swapped array in the presence and absence of L-tryptophan.
Acta Crystallogr.,Sect.F, 77, 2021
7OSA
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BU of 7osa by Molmil
Pre-translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands
分子名称: 18S rRNA, 25S rRNA, 40S ribosomal protein S0, ...
著者Djumagulov, M, Jenner, L, Rozov, A, Demeshkina, N, Yusupov, M, Yusupova, G.
登録日2021-06-08
公開日2021-12-08
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献Accuracy mechanism of eukaryotic ribosome translocation.
Nature, 600, 2021
7OSM
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BU of 7osm by Molmil
Intermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands
分子名称: 18S rRNA, 25S rRNA, 40S ribosomal protein S0, ...
著者Djumagulov, M, Jenner, L, Rozov, A, Demeshkina, N, Yusupov, M, Yusupova, G.
登録日2021-06-09
公開日2021-12-08
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献Accuracy mechanism of eukaryotic ribosome translocation.
Nature, 600, 2021
7OST
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Rat HIP1R ANTH domain
分子名称: Huntingtin-interacting protein 1-related, MAGNESIUM ION, SULFATE ION
著者Ford, M.G.J, McMahon, H.T, Evans, P.R.
登録日2021-06-09
公開日2021-07-21
最終更新日2024-05-15
実験手法X-RAY DIFFRACTION (1.4 Å)
主引用文献Structure of the N-terminal ANTH domain of rat HIP1R
To Be Published
7OT5
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BU of 7ot5 by Molmil
CspA-70 cotranslational folding intermediate 1
分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ...
著者Agirrezabala, X, Samatova, E, Macher, M, Liutkute, M, Gil-Carton, D, Novacek, J, Valle, M, Rodnina, M.V.
登録日2021-06-09
公開日2022-01-19
最終更新日2024-04-24
実験手法ELECTRON MICROSCOPY (2.9 Å)
主引用文献A switch from alpha-helical to beta-strand conformation during co-translational protein folding.
Embo J., 41, 2022
7OTC
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Cryo-EM structure of an Escherichia coli 70S ribosome in complex with elongation factor G and the antibiotic Argyrin B
分子名称: 1,4-DIAMINOBUTANE, 16S ribosomal RNA, 23S ribosomal RNA, ...
著者Wieland, M, Koller, T.O, Wilson, D.N.
登録日2021-06-10
公開日2022-05-11
最終更新日2024-04-24
実験手法ELECTRON MICROSCOPY (2.9 Å)
主引用文献The cyclic octapeptide antibiotic argyrin B inhibits translation by trapping EF-G on the ribosome during translocation.
Proc.Natl.Acad.Sci.USA, 119, 2022

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