Legacy flatfile-incompatible PDB entries

7ETJ	C5 portal vertex in the partially-enveloped virion capsid Descriptor: Capsid vertex component 1, Capsid vertex component 2, Large tegument protein deneddylase, ... Authors: Li, Z, Yu, X. Deposit date: 2021-05-13 Release date: 2021-07-14 Last modified: 2025-07-02 Method: ELECTRON MICROSCOPY (4 Å) Cite: Structural basis for genome packaging, retention, and ejection in human cytomegalovirus. Nat Commun, 12, 2021
7ETO	C1 CVSC-binding penton vertex in the virion capsid of Human Cytomegalovirus Descriptor: Capsid vertex component 1, Capsid vertex component 2, Large tegument protein deneddylase, ... Authors: Li, Z, Yu, X. Deposit date: 2021-05-13 Release date: 2021-07-14 Last modified: 2025-07-02 Method: ELECTRON MICROSCOPY (4 Å) Cite: Structural basis for genome packaging, retention, and ejection in human cytomegalovirus. Nat Commun, 12, 2021
7EVF	Plant growth-promoting factor YxaL mutant from Bacillus velezensis - T175W/S213G/W215A Descriptor: PQQ_3 domain-containing protein Authors: Kim, J, Ha, N.-C. Deposit date: 2021-05-21 Release date: 2022-01-12 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (1.5 Å) Cite: Structure of the plant growth-promoting factor YxaL from the rhizobacterium Bacillus velezensis and its application to protein engineering. Acta Crystallogr D Struct Biol, 78, 2022
7EW5	immune complex of HPV6 L1 pentamer and neutralizing antibody 13H5 Descriptor: Heavy chain of 13H5, Light chain of 13H5, Major capsid protein L1 Authors: Wang, Z.P, Wang, D.N, Gu, Y, Li, S.W. Deposit date: 2021-05-24 Release date: 2022-06-01 Last modified: 2025-02-26 Method: X-RAY DIFFRACTION (3.606 Å) Cite: Rational design of a cross-type HPV vaccine through immunodominance shift guided by a cross-neutralizing antibody. Sci Bull (Beijing), 69, 2024
7EXT	Cryo-EM structure of cyanobacterial phycobilisome from Synechococcus sp. PCC 7002 Descriptor: Allophycocyanin alpha subunit, Allophycocyanin beta subunit, Allophycocyanin subunit alpha-B, ... Authors: Zheng, L, Zheng, Z, Li, X, Wang, G, Zhang, K, Wei, P, Zhao, J, Gao, N. Deposit date: 2021-05-28 Release date: 2021-10-06 Method: ELECTRON MICROSCOPY (3.5 Å) Cite: Structural insight into the mechanism of energy transfer in cyanobacterial phycobilisomes. Nat Commun, 12, 2021
7EY0	Local CryoEM structure of the SARS-CoV-2 S6PV2 in complex with BD-813 Fab and BD-744 Fab Descriptor: BD-744H, BD-744L, BD-813H, ... Authors: Du, S, Xiao, J. Deposit date: 2021-05-29 Release date: 2021-09-08 Last modified: 2025-06-18 Method: ELECTRON MICROSCOPY (3.2 Å) Cite: Structures of SARS-CoV-2 B.1.351 neutralizing antibodies provide insights into cocktail design against concerning variants. Cell Res., 31, 2021
7EY4	Local CryoEM of the SARS-CoV-2 S6PV2 in complex with BD-667 Descriptor: BD-667 H, BD-667 L, Spike glycoprotein, ... Authors: Liu, P.L. Deposit date: 2021-05-29 Release date: 2021-09-08 Last modified: 2025-07-02 Method: ELECTRON MICROSCOPY (3.69 Å) Cite: Structures of SARS-CoV-2 B.1.351 neutralizing antibodies provide insights into cocktail design against concerning variants. Cell Res., 31, 2021
7EYD	Cryo-EM structure of cyanobacterial phycobilisome from Anabaena sp. PCC 7120 Descriptor: Allophycocyanin subunit alpha 1, Allophycocyanin subunit alpha-B, Allophycocyanin subunit beta, ... Authors: Zheng, L, Zheng, Z, Li, X, Wang, G, Zhang, K, Wei, P, Zhao, J, Gao, N. Deposit date: 2021-05-30 Release date: 2021-10-06 Method: ELECTRON MICROSCOPY (3.9 Å) Cite: Structural insight into the mechanism of energy transfer in cyanobacterial phycobilisomes. Nat Commun, 12, 2021
7EZX	Structure of the phycobilisome from the red alga Porphyridium purpureum in Middle Light Descriptor: Allophycocyanin alpha subunit, Allophycocyanin beta 18 subunit, Allophycocyanin beta subunit, ... Authors: Ma, J.F, Sui, S.-F. Deposit date: 2021-06-02 Release date: 2022-09-28 Last modified: 2024-04-03 Method: ELECTRON MICROSCOPY (3 Å) Cite: The structural basis for light acclimation in phycobilisome light harvesting systems systems in Porphyridium purpureum Commun Biol, 6, 2023
7F25	Crystal structure of SSB from Salmonella enterica serovar Typhimurium LT2. Descriptor: Single-stranded DNA-binding protein 1 Authors: Luo, R.H, Huang, Y.H, Huang, C.Y. Deposit date: 2021-06-10 Release date: 2022-05-04 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (2.87 Å) Cite: Crystal Structure of an SSB Protein from Salmonella enterica and Its Inhibition by Flavanonol Taxifolin. Int J Mol Sci, 23, 2022
7F2N	Crystal structure of SSB from Klebsiella pneumonia. Descriptor: Single-stranded DNA-binding protein Authors: Lin, E.S, Huang, Y.H, Huang, C.Y. Deposit date: 2021-06-11 Release date: 2021-11-10 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (2.35 Å) Cite: Characterization of the Chimeric PriB-SSBc Protein. Int J Mol Sci, 22, 2021
7F4V	Cryo-EM structure of a primordial cyanobacterial photosystem I Descriptor: 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE, 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE, BETA-CAROTENE, ... Authors: Kato, K, Hamaguchi, T, Nagao, R, Kawakami, K, Yonekura, K, Shen, J.R. Deposit date: 2021-06-21 Release date: 2022-04-06 Last modified: 2024-10-16 Method: ELECTRON MICROSCOPY (2.04 Å) Cite: Structural basis for the absence of low-energy chlorophylls responsible for photoprotection from a primitive cyanobacterial PSI Biorxiv, 2022
7F5S	human delta-METTL18 60S ribosome Descriptor: 28S rRNA, 5.8S rRNA, 5S rRNA, ... Authors: Takahashi, M, Kashiwagi, K, Ito, T. Deposit date: 2021-06-22 Release date: 2022-06-22 Method: ELECTRON MICROSCOPY (2.72 Å) Cite: METTL18-mediated histidine methylation of RPL3 modulates translation elongation for proteostasis maintenance. Elife, 11, 2022
7F8I	Crystal structure of HPV6 L1 pentamer Descriptor: Major capsid protein L1 Authors: Wang, Z.P, Wang, D.N, Gu, Y, Li, S.W. Deposit date: 2021-07-02 Release date: 2022-07-06 Last modified: 2025-02-26 Method: X-RAY DIFFRACTION (3.366 Å) Cite: Rational design of a cross-type HPV vaccine through immunodominance shift guided by a cross-neutralizing antibody. Sci Bull (Beijing), 69, 2024
7F9O	PSI-NDH supercomplex of Barley Descriptor: (3R,3'R,6S)-4,5-DIDEHYDRO-5,6-DIHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL, (3S,5R,6S,3'S,5'R,6'S)-5,6,5',6'-DIEPOXY-5,6,5',6'- TETRAHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL, 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL, ... Authors: Wang, W.D, Shen, L, Tang, K, Han, G.Y, Shen, J.R, Zhang, X. Deposit date: 2021-07-04 Release date: 2021-12-22 Last modified: 2024-10-16 Method: ELECTRON MICROSCOPY (4.5 Å) Cite: Architecture of the chloroplast PSI-NDH supercomplex in Hordeum vulgare. Nature, 601, 2022
7FB1	SARS-CoV-2 spike protein in one-RBD open state Descriptor: Spike glycoprotein Authors: Zhu, Y, Tai, L.H, Sun, F. Deposit date: 2021-07-08 Release date: 2022-07-13 Last modified: 2025-06-25 Method: ELECTRON MICROSCOPY (3.7 Å) Cite: Novel sites for Cathepsin L cleavage in SARS-CoV-2 spike guide treatment strategies To Be Published
7FCF	Crystal structure of T6SS Hcp protein Descriptor: Fimbrial protein Authors: Jobichen, C, Sivaraman, J. Deposit date: 2021-07-14 Release date: 2022-07-20 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (3.3 Å) Cite: Bacterial antagonism of Chromobacterium haemolyticum and characterization of its putative type VI secretion system. Res.Microbiol., 173, 2022
7FF7	Structure of OmpF2 Descriptor: Outer membrane protein F, ZINC ION Authors: Jeong, W.J, Song, W.J. Deposit date: 2021-07-22 Release date: 2022-11-16 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (3.38 Å) Cite: Design and directed evolution of noncanonical beta-stereoselective metalloglycosidases. Nat Commun, 13, 2022
7FFE	Cryo-EM structure of VEEV VLP Descriptor: Capsid protein, Spike glycoprotein E1, Spike glycoprotein E2, ... Authors: Zhang, X, Xiang, Y, Ma, J, Ma, B, Huang, C. Deposit date: 2021-07-23 Release date: 2021-10-20 Last modified: 2024-10-16 Method: ELECTRON MICROSCOPY (3.5 Å) Cite: Structure of Venezuelan equine encephalitis virus with its receptor LDLRAD3. Nature, 598, 2021
7FFF	Structure of Venezuelan equine encephalitis virus with the receptor LDLRAD3 Descriptor: CALCIUM ION, Capsid protein, Low-density lipoprotein receptor class A domain-containing protein 3, ... Authors: Zhang, X, Xiang, Y, Ma, J, Ma, B, Huang, C. Deposit date: 2021-07-23 Release date: 2021-10-20 Last modified: 2024-11-20 Method: ELECTRON MICROSCOPY (3 Å) Cite: Structure of Venezuelan equine encephalitis virus with its receptor LDLRAD3. Nature, 598, 2021
7FFL	Cryo-EM structure of VEEV VLP-LDLRAD3-D1 complex at the 2-fold axes Descriptor: CALCIUM ION, Capsid protein, Low-density lipoprotein receptor class A domain-containing protein 3, ... Authors: Zhang, X, Xiang, Y, Ma, J, Ma, B, Huang, C. Deposit date: 2021-07-23 Release date: 2021-10-20 Last modified: 2024-10-30 Method: ELECTRON MICROSCOPY (3.1 Å) Cite: Structure of Venezuelan equine encephalitis virus with its receptor LDLRAD3. Nature, 598, 2021
7FFQ	Cryo-EM structure of VEEV VLP at the 2-fold axes Descriptor: Capsid protein, Spike glycoprotein E1, Spike glycoprotein E2, ... Authors: Zhang, X, Xiang, Y, Ma, J, Ma, B, Huang, C. Deposit date: 2021-07-23 Release date: 2021-10-20 Last modified: 2024-11-13 Method: ELECTRON MICROSCOPY (3.5 Å) Cite: Structure of Venezuelan equine encephalitis virus with its receptor LDLRAD3. Nature, 598, 2021
7FIK	The cryo-EM structure of the CR subunit from X. laevis NPC Descriptor: MGC154553 protein, MGC83295 protein, MGC83926 protein, ... Authors: Shi, Y, Huang, G, Zhan, X. Deposit date: 2021-07-31 Release date: 2022-11-09 Last modified: 2024-06-12 Method: ELECTRON MICROSCOPY (3.7 Å) Cite: Structure of the cytoplasmic ring of the Xenopus laevis nuclear pore complex. Science, 376, 2022
7FIX	Cryo-EM structure of cyanobacterial photosystem I in the presence of ferredoxin and cytochrome c6 Descriptor: 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE, BETA-CAROTENE, CALCIUM ION, ... Authors: Li, J, Kurisu, G. Deposit date: 2021-08-01 Release date: 2022-09-21 Last modified: 2024-11-06 Method: ELECTRON MICROSCOPY (1.97 Å) Cite: Structure of cyanobacterial photosystem I complexed with ferredoxin at 1.97 angstrom resolution. Commun Biol, 5, 2022
7FJ1	Cryo-EM structure of pseudorabies virus C-capsid Descriptor: Capsid vertex component 1, DNA packaging tegument protein UL25, Major capsid protein, ... Authors: Zheng, Q, Li, S, Zha, Z, Sun, H. Deposit date: 2021-08-02 Release date: 2022-06-22 Last modified: 2024-11-06 Method: ELECTRON MICROSCOPY (4.43 Å) Cite: Structures of pseudorabies virus capsids. Nat Commun, 13, 2022

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