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coronavirus
Coronavirus, 2020. Modified from the original illustration by David S. Goodsell@RCSB PDB

The recent outbreak of the Novel Coronavirus disease (COVID-19) is a serious threat to people all over the world. In order to understand and develop an effective drug against this virus (Severe Acute Respiratory Syndrome Coronavirus 2: SARS-CoV-2), structural work on the related proteins has already started and the resultant entries are accumulating in the PDB. PDBj provides a portal page for the COVID-19 related entries for our users. New entries will be added simultaneously with the public release from the wwPDB.

An explanation article covering one of the proteins of this virus is available on the "Molecules of the Month" page below:

The tab "All entries" contains all PDB IDs, in case you want to check all independent entries, including group depositions by the same authors. The "Repr. entries" tab contains only representative PDB entries with the highest resolution, excluding duplicate entries with 100% amino acid sequence identitiy, even if they contain a different ligand. Finally, the "Latest entries" tab contains the latest entries released this week.

Created: 2020-10-28 (last edited: more than 1 year ago)2022-09-02
All entries (5197)Repr. entries (2266)Latest entries (44)
9MPW
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BU of 9mpw by Molmil
SARS-CoV2 Spike S2 Subunit in complex with M15 Antibody Fragment
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Fab M15 Heavy Chain, ...
Authors:Sapse, I.A, Bajic, G.
Deposit date:2024-12-31
Release date:2025-07-09
Method:ELECTRON MICROSCOPY (3.37 Å)
Cite:SARS-CoV2 Spike S2 Subunit in complex with M15 Antibody Fragment
To Be Published
9RCZ
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BU of 9rcz by Molmil
Structure of the N-terminal domain of non-structural protein 1 (Nsp1) from SARS-CoV-2
Descriptor: ORF1a polyprotein
Authors:Lennartz, F, Weiss, M.S.
Deposit date:2025-05-30
Release date:2025-07-09
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Crystallographic fragment screening against SARS-CoV-2 Nsp1 using the F2X-Entry Screen and a newly developed fragment library.
To Be Published
9RHS
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BU of 9rhs by Molmil
Structure of 3CL protease with a bound inhibitor
Descriptor: 3C-like proteinase nsp5, ~{N}-(4-bromanyl-3-nitro-phenyl)-2-(1,2,3-triazol-1-yl)ethanamide
Authors:Mac Sweeney, A.
Deposit date:2025-06-10
Release date:2025-07-09
Method:X-RAY DIFFRACTION (1.638 Å)
Cite:SARS-CoV-2 3CL protease with a bound inhibitor
To Be Published
9RHT
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BU of 9rht by Molmil
Structure of 3CL protease with a bound inhibitor
Descriptor: 3C-like proteinase nsp5, DIMETHYL SULFOXIDE, SODIUM ION, ...
Authors:Mac Sweeney, A.
Deposit date:2025-06-10
Release date:2025-07-09
Method:X-RAY DIFFRACTION (1.624 Å)
Cite:SARS-CoV-2 3CL protease with a bound inhibitor
To Be Published
9RHX
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BU of 9rhx by Molmil
SARS-CoV-2 main protease with a bound inhibitor
Descriptor: 2-pyridin-3-ylquinazoline, 3C-like proteinase nsp5, CHLORIDE ION, ...
Authors:Mac Sweeney, A.
Deposit date:2025-06-10
Release date:2025-07-09
Method:X-RAY DIFFRACTION (1.62 Å)
Cite:SARS-CoV-2 main protease with a bound inhibitor
To Be Published
9RI0
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BU of 9ri0 by Molmil
SARS-CoV-2 3CL protease with a bound inhibitor
Descriptor: 1,2-ETHANEDIOL, 3C-like proteinase nsp5, CHLORIDE ION, ...
Authors:Mac Sweeney, A.
Deposit date:2025-06-10
Release date:2025-07-09
Method:X-RAY DIFFRACTION (1.39 Å)
Cite:SARS-CoV-2 3CL protease with a bound inhibitor
To Be Published
9RI1
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BU of 9ri1 by Molmil
SARS-CoV-2 with a bound inhibitor
Descriptor: (4~{R})-~{N}-(3,4-dipropoxyphenyl)-2-oxidanylidene-3,4-dihydro-1~{H}-quinoline-4-carboxamide, 3C-like proteinase nsp5, BROMIDE ION, ...
Authors:Mac Sweeney, A.
Deposit date:2025-06-10
Release date:2025-07-09
Method:X-RAY DIFFRACTION (1.309 Å)
Cite:SARS-CoV-2 with a bound inhibitor
To Be Published
9RI3
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BU of 9ri3 by Molmil
SARS-CoV-2 with a bound inhibitor
Descriptor: 3C-like proteinase nsp5, DIMETHYL SULFOXIDE, SODIUM ION, ...
Authors:Mac Sweeney, A.
Deposit date:2025-06-11
Release date:2025-07-09
Method:X-RAY DIFFRACTION (1.723 Å)
Cite:SARS-CoV-2 with a bound inhibitor
To Be Published
9RI4
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BU of 9ri4 by Molmil
SARS-CoV-2 with a bound inhibitor
Descriptor: 2-azanyl-~{N}-[(1~{R},2~{S})-2-(4-chloranyl-3-fluoranyl-phenyl)cyclopropyl]-6-nitro-benzamide, 3C-like proteinase nsp5, SODIUM ION
Authors:Mac Sweeney, A.
Deposit date:2025-06-11
Release date:2025-07-09
Method:X-RAY DIFFRACTION (1.762 Å)
Cite:SARS-CoV-2 with a bound inhibitor
To Be Published
9RI5
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BU of 9ri5 by Molmil
SARS-CoV-2 with a bound inhibitor
Descriptor: 3C-like proteinase nsp5, SULFATE ION, ~{N}-(2,3-dihydro-1~{H}-inden-2-yl)-2-pyridin-3-yl-~{N}-(thiophen-2-ylmethyl)ethanamide
Authors:Mac Sweeney, A.
Deposit date:2025-06-11
Release date:2025-07-09
Method:X-RAY DIFFRACTION (1.634 Å)
Cite:SARS-CoV-2 with a bound inhibitor
To Be Published
9RI8
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BU of 9ri8 by Molmil
SARS-CoV-2 with a bound inhibitor
Descriptor: 3C-like proteinase nsp5, 4-(azetidin-1-yl)-2-isoquinolin-4-yl-thieno[2,3-d]pyrimidine, DIMETHYL SULFOXIDE, ...
Authors:Mac Sweeney, A.
Deposit date:2025-06-11
Release date:2025-07-09
Method:X-RAY DIFFRACTION (1.781 Å)
Cite:SARS-CoV-2 with a bound inhibitor
To Be Published
9RID
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BU of 9rid by Molmil
SARS-CoV-2 with a bound inhibitor
Descriptor: (2~{R})-2-[2-(benzotriazol-1-yl)ethanoyl-methyl-amino]-2-(3-fluorophenyl)ethanamide, 3C-like proteinase nsp5, SODIUM ION, ...
Authors:Mac Sweeney, A.
Deposit date:2025-06-11
Release date:2025-07-09
Method:X-RAY DIFFRACTION (1.63 Å)
Cite:SARS-CoV-2 with a bound inhibitor
To Be Published
9RIX
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BU of 9rix by Molmil
SARS-CoV-2 with a bound inhibitor
Descriptor: (4~{R})-~{N}-[2-(1-benzothiophen-3-yl)ethyl]-7-fluoranyl-2-oxidanylidene-3,4-dihydro-1~{H}-quinoline-4-carboxamide, 3C-like proteinase nsp5, DIMETHYL SULFOXIDE, ...
Authors:Mac Sweeney, A.
Deposit date:2025-06-12
Release date:2025-07-09
Method:X-RAY DIFFRACTION (1.73 Å)
Cite:SARS-CoV-2 with a bound inhibitor
To Be Published
9RIY
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BU of 9riy by Molmil
SARS-CoV-2 with a bound inhibitor
Descriptor: 3C-like proteinase nsp5, DIMETHYL SULFOXIDE, SODIUM ION, ...
Authors:Mac Sweeney, A.
Deposit date:2025-06-12
Release date:2025-07-09
Method:X-RAY DIFFRACTION (1.788 Å)
Cite:SARS-CoV-2 with a bound inhibitor
To Be Published
9RIZ
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BU of 9riz by Molmil
SARS-CoV-2 with a bound inhibitor
Descriptor: (4~{R})-~{N}-(3-cyclopropylphenyl)-2-oxidanylidene-3,4-dihydro-1~{H}-1,8-naphthyridine-4-carboxamide, 3C-like proteinase nsp5
Authors:Mac Sweeney, A.
Deposit date:2025-06-12
Release date:2025-07-09
Method:X-RAY DIFFRACTION (1.734 Å)
Cite:SARS-CoV-2 with a bound inhibitor
To Be Published
9RJ0
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BU of 9rj0 by Molmil
SARS-CoV-2 with a bound inhibitor
Descriptor: 1-(benzimidazol-1-yl)-3-[(4~{S})-6-fluoranyl-3,4-dihydro-2~{H}-thiochromen-4-yl]urea, 3C-like proteinase nsp5, SODIUM ION
Authors:Mac Sweeney, A.
Deposit date:2025-06-12
Release date:2025-07-09
Method:X-RAY DIFFRACTION (1.709 Å)
Cite:SARS-CoV-2 with a bound inhibitor
To Be Published
9RJ3
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BU of 9rj3 by Molmil
SARS-CoV-2 with a bound inhibitor
Descriptor: (2~{R})-1-[3-(aminomethyl)-1,2,4-triazol-1-yl]-3-[2,5-bis(chloranyl)phenoxy]propan-2-ol, 3C-like proteinase nsp5, CHLORIDE ION, ...
Authors:Mac Sweeney, A.
Deposit date:2025-06-12
Release date:2025-07-09
Method:X-RAY DIFFRACTION (1.618 Å)
Cite:SARS-CoV-2 with a bound inhibitor
To Be Published
9RJ5
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BU of 9rj5 by Molmil
SARS-CoV-2 with a bound inhibitor
Descriptor: 1-(2-cyclohexylethyl)-3-cyclopropyl-1-[(5-methyl-1,2-oxazol-3-yl)methyl]urea, 3C-like proteinase nsp5
Authors:Mac Sweeney, A.
Deposit date:2025-06-12
Release date:2025-07-09
Method:X-RAY DIFFRACTION (1.25 Å)
Cite:SARS-CoV-2 with a bound inhibitor
To Be Published
9RJ7
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BU of 9rj7 by Molmil
SARS-CoV-2 with a bound inhibitor
Descriptor: 3C-like proteinase nsp5, 4-fluoranyl-~{N}-(pyridin-3-ylmethyl)-2,3-dihydroindole-1-carboxamide, SODIUM ION
Authors:Mac Sweeney, A.
Deposit date:2025-06-12
Release date:2025-07-09
Method:X-RAY DIFFRACTION (1.897 Å)
Cite:SARS-CoV-2 with a bound inhibitor
To Be Published
9RJ8
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BU of 9rj8 by Molmil
SARS-CoV-2 with a bound inhibitor
Descriptor: 3C-like proteinase nsp5, 4-fluoranyl-~{N}-(3-phenoxypropyl)-~{N}-(1,2-thiazol-5-ylmethyl)-2,3-dihydroindole-1-carboxamide
Authors:Mac Sweeney, A.
Deposit date:2025-06-12
Release date:2025-07-09
Method:X-RAY DIFFRACTION (1.433 Å)
Cite:SARS-CoV-2 with a bound inhibitor
To Be Published
9RJF
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BU of 9rjf by Molmil
SARS-CoV-2 with a bound inhibitor
Descriptor: 3-(5-bromanylpyridin-3-yl)-1-[(1~{R})-1-phenylethyl]imidazolidine-2,4-dione, 3C-like proteinase nsp5
Authors:Mac Sweeney, A.
Deposit date:2025-06-12
Release date:2025-07-09
Method:X-RAY DIFFRACTION (1.893 Å)
Cite:SARS-CoV-2 with a bound inhibitor
To Be Published
9RJR
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BU of 9rjr by Molmil
SARS-CoV-2 with a bound inhibitor
Descriptor: 1-[[3,4-bis(fluoranyl)phenyl]methyl]-3-(5-bromanylpyridin-3-yl)imidazolidine-2,4-dione, 3C-like proteinase nsp5, SODIUM ION, ...
Authors:Mac Sweeney, A.
Deposit date:2025-06-12
Release date:2025-07-09
Method:X-RAY DIFFRACTION (1.705 Å)
Cite:SARS-CoV-2 with a bound inhibitor
To Be Published

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PDB entries from 2025-07-09

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