Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

COVID-19特輯

本頁面還有其他語言版本: English日本語简体中文한국어
冠狀病毒
冠狀病毒,2020. 由David S. Goodsell @ RCSB PDB原圖修改

最近爆發的新型冠狀病毒傳染病(Novel Coronavirus disease 2019: COVID-19)對全世界的人們都構成了嚴重威脅。 為了儘早了解新病毒(Severe Acute Respiratory Syndrome Coronavirus 2: SARS-CoV-2)以開發出有效的抗病毒藥物,已經有很多科研人員開始了相關蛋白結構的研究,並且將所獲得結構數據存儲與PDB。 PDBj為用戶提供了COVID-19相關數據一覽的門戶頁面,並將於每週三更新當日新發佈的相關數據。

有關該病毒蛋白質的解說,請參見下面的“當月的分子”頁面。

“所有結構”標籤的頁面則逐一羅列了所有的數據,包括由同一研究組提交的系列數據群。 “代表性結構”標籤的頁面精選具有相同胺基酸序列的結構數據中的高分辨率數據,不重複選擇具有同一胺基酸序列的數據,即使該數據可能包含不同的配體。 “最新條目”標籤內包含本週新更新數據。


Created: 2020-09-03 (last edited: more than 1 year ago)2022-09-02
9BND
DownloadVisualize
BU of 9bnd by Molmil
SARS-CoV-2 spike HexaPro protein in complex with T0A trimeric antagonist
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Collagen alpha-1(XVIII) chain,Processed angiotensin-converting enzyme 2, ...
Authors:Young, T.
Deposit date:2024-05-02
Release date:2025-08-27
Method:ELECTRON MICROSCOPY (3.19 Å)
Cite:Development of an ultrahigh affinity, trimeric ACE2 biologic as a universal COVID antagonist
To Be Published
9BNE
DownloadVisualize
BU of 9bne by Molmil
SARS-CoV-2 spike HexaPro protein in complex with T3A trimeric antagonist
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Collagen alpha-1(XVIII) chain,Processed angiotensin-converting enzyme 2, ...
Authors:Young, T.
Deposit date:2024-05-02
Release date:2025-08-27
Method:ELECTRON MICROSCOPY (3.43 Å)
Cite:Development of an ultrahigh affinity, trimeric ACE2 biologic as a universal COVID antagonist
To Be Published
9BNF
DownloadVisualize
BU of 9bnf by Molmil
SARS-CoV-2 spike HexaPro protein in complex with T5A trimeric antagonist
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Collagen alpha-1(XVIII) chain,Processed angiotensin-converting enzyme 2, ...
Authors:Young, T.
Deposit date:2024-05-02
Release date:2025-08-27
Method:ELECTRON MICROSCOPY (3.33 Å)
Cite:Development of an ultrahigh affinity, trimeric ACE2 biologic as a universal COVID antagonist
To Be Published
9BNG
DownloadVisualize
BU of 9bng by Molmil
SARS-CoV-2 spike HexaPro protein in complex with T18A trimeric antagonist
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Collagen alpha-1(XVIII) chain,Processed angiotensin-converting enzyme 2, ...
Authors:Young, T.
Deposit date:2024-05-02
Release date:2025-08-27
Method:ELECTRON MICROSCOPY (3.73 Å)
Cite:Development of an ultrahigh affinity, trimeric ACE2 biologic as a universal COVID antagonist
To Be Published
9GHN
DownloadVisualize
BU of 9ghn by Molmil
Structure of SARS-CoV-2 Main Protease (Mpro) with mutation of Q256A
Descriptor: 1,2-ETHANEDIOL, 3C-like proteinase nsp5, CHLORIDE ION, ...
Authors:Creon, A, Scheer, T.E.S, Lane, T.J, Rahmani Mashhour, A, Guenther, S, Reinke, P.Y.A, Meents, A, Chapman, H.N.
Deposit date:2024-08-15
Release date:2025-09-03
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Structure of SARS-CoV-2 Main Protease (Mpro) with mutation of Q256A
To Be Published
9GHO
DownloadVisualize
BU of 9gho by Molmil
Structure of SARS-CoV-2 Main Protease (Mpro) with mutation of S284A
Descriptor: 3C-like proteinase nsp5, CHLORIDE ION, DIMETHYL SULFOXIDE
Authors:Creon, A, Scheer, T.E.S, Lane, T.J, Rahmani Mashhour, A, Guenther, S, Reinke, P.Y.A, Meents, A, Chapman, H.N.
Deposit date:2024-08-15
Release date:2025-09-03
Method:X-RAY DIFFRACTION (1.86 Å)
Cite:Structure of SARS-CoV-2 Main Protease (Mpro) with mutation of S284A
To Be Published
9GI6
DownloadVisualize
BU of 9gi6 by Molmil
Structure of SARS-CoV-2 Main Protease (Mpro) with mutation of N214A
Descriptor: CHLORIDE ION, DI(HYDROXYETHYL)ETHER, Replicase polyprotein 1a, ...
Authors:Creon, A, Scheer, T.E.S, Lane, T.J, Rahmani Mashhour, A, Guenther, S, Reinke, P.Y.A, Meents, A, Chapman, H.N.
Deposit date:2024-08-17
Release date:2025-09-03
Method:X-RAY DIFFRACTION (1.83 Å)
Cite:Structure of SARS-CoV-2 Main Protease (Mpro) with mutation of N214A
To Be Published
9JEB
DownloadVisualize
BU of 9jeb by Molmil
Crystal structure of SARS-CoV-2 RBD in complex with a neutralizing antibody scFv N1
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, N1 scFv, Spike protein S1
Authors:Guo, K, Zhang, N, Guo, Y.
Deposit date:2024-09-03
Release date:2025-09-03
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Mining antibody functionality via AI-guided structural landscape profiling
To Be Published
8ZRD
DownloadVisualize
BU of 8zrd by Molmil
The complex structure of SARS-CoV-2 RBD and llama single-domain antibody S4
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Spike protein S1, llama single-domain antibody S4
Authors:Chen, L.
Deposit date:2024-06-04
Release date:2025-09-10
Method:X-RAY DIFFRACTION (2.715 Å)
Cite:Identification of a potent SARS-CoV-2 neutralizing nanobody targeting the receptor-binding domain of the spike protein.
Int.J.Biol.Macromol., 281, 2024
9PYS
DownloadVisualize
BU of 9pys by Molmil
NMR RDC refinement of the helical domain of the SARS-CoV-2 monomeric Main Protease (MPROH41Q,10-306)
Descriptor: 3C-like proteinase nsp5
Authors:Smith, M.J, Ying, J, Shen, Y, Louis, J.M, Bax, A.
Deposit date:2025-08-08
Release date:2025-09-17
Method:SOLUTION NMR
Cite:Solution Domain Dynamics of Monomeric SARS-CoV-2 Main Protease Revealed by Optimized NMR Residual Dipolar Coupling Measurements.
To Be Published
9PYZ
DownloadVisualize
BU of 9pyz by Molmil
SARS-CoV-2 core polymerase complex bound to RNA, araUMP, and UTP
Descriptor: MAGNESIUM ION, Non-structural protein 7, Non-structural protein 8, ...
Authors:Xiao, Z, Kirchdeorfer, R.N.
Deposit date:2025-08-08
Release date:2025-09-17
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:The 2'-endo conformation of arabinose-CTP and arabinose-UTP inhibit viral polymerases by inducing long pauses.
Biorxiv, 2025
9PZ0
DownloadVisualize
BU of 9pz0 by Molmil
SARS-CoV-2 core polymerase complex with two UTP incorporation
Descriptor: Non-structural protein 7, Non-structural protein 8, Primer RNA, ...
Authors:Xiao, Z, Kirchdeorfer, R.N.
Deposit date:2025-08-08
Release date:2025-09-17
Method:ELECTRON MICROSCOPY (3 Å)
Cite:The 2'-endo conformation of arabinose-CTP and arabinose-UTP inhibit viral polymerases by inducing long pauses.
Biorxiv, 2025
9Q1J
DownloadVisualize
BU of 9q1j by Molmil
Cryo-EM structure of SARS-CoV-2 nsp10-nsp14 E191A mutant-T20P14-R complex
Descriptor: MAGNESIUM ION, Non-structural protein 10, Proofreading exoribonuclease, ...
Authors:Yang, Y, Liu, C, Liu, B.
Deposit date:2025-08-14
Release date:2025-09-24
Last modified:2025-10-15
Method:ELECTRON MICROSCOPY (2.81 Å)
Cite:Molecular basis of SARS-CoV-2 proofreading enzyme-mediated resistance to remdesivir.
Proc.Natl.Acad.Sci.USA, 122, 2025
9VS1
DownloadVisualize
BU of 9vs1 by Molmil
Crystal structure of SARS-CoV-2 3CL protease in complex with compound 15
Descriptor: 1,2-ETHANEDIOL, 3C-like proteinase, 4-chloranyl-3-[6-methyl-3-[(1-methyl-1,2,4-triazol-3-yl)methyl]-2,4,5-tris(oxidanylidene)-1-[[3,4,5-tris(fluoranyl)phenyl]methyl]pyrido[4,3-d]pyrimidin-7-yl]benzenecarbonitrile
Authors:Yamamoto, S, Taoda, Y.
Deposit date:2025-07-08
Release date:2025-09-24
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Design, synthesis and biological evaluation of novel quinazolinedione derivatives as non-covalent SARS-CoV-2 3CL protease inhibitors.
Bioorg.Med.Chem.Lett., 129, 2025
8YUB
DownloadVisualize
BU of 8yub by Molmil
Crystal structure of SARS-CoV-2 ConSp RBD in complex with neutralizing antibody CC25.4 Fab
Descriptor: 1,2-ETHANEDIOL, Neutralizing antibody CC25.4 heavy chain, Neutralizing antibody CC25.4 light chain, ...
Authors:Kang, J.M, Yuan, M, Han, B.W, Wilson, I.A.
Deposit date:2024-03-27
Release date:2025-10-01
Method:X-RAY DIFFRACTION (2.49 Å)
Cite:Structure and antigenic characteristics of consensus sequence-based SARS-CoV-2 antigen
To Be Published
8YUC
DownloadVisualize
BU of 8yuc by Molmil
Crystal structure of SARS-CoV-2 ConSp RBD in complex with antibodies PDI222 Fab and COVA1-16 Fab
Descriptor: COVA1-16 heavy chain, COVA1-16 light chain, PDI222 heavy chain, ...
Authors:Kang, J.M, Yuan, M, Han, B.W, Wilson, I.A.
Deposit date:2024-03-27
Release date:2025-10-01
Method:X-RAY DIFFRACTION (4.51 Å)
Cite:Structure and antigenic characteristics of consensus sequence-based SARS-CoV-2 antigen
To Be Published
9BF7
DownloadVisualize
BU of 9bf7 by Molmil
SARS-CoV-2 Papain-like Protease (PLpro) C111S Untagged Crystal Structure
Descriptor: ACETATE ION, GLYCEROL, PHOSPHATE ION, ...
Authors:Al-Homoudi, A.I, Brunzelle, J.S, Gavande, N, Kovari, L.C.
Deposit date:2024-04-17
Release date:2025-10-01
Last modified:2025-10-15
Method:X-RAY DIFFRACTION (1.68 Å)
Cite:Human Structural Homologues of SARS-CoV-2 PL pro as Anti-Targets: A Strategic Panel Analysis.
MicroPubl Biol, 2025, 2025
9SAO
DownloadVisualize
BU of 9sao by Molmil
Cryo-EM structure of SARS CoV-2 RdRp S759A mutant in complex with 20-40mer RNA incorporating remdesivir
Descriptor: Non-structural protein 7, Non-structural protein 8, RNA primer strand (25-MER), ...
Authors:Oliva, M.F, Das, K.
Deposit date:2025-08-07
Release date:2025-10-01
Method:ELECTRON MICROSCOPY (2.9 Å)
Cite:Structural basis for selective remdesivir incorporation by SARS-CoV-2 RNA polymerase, and S759A resistance.
Biorxiv, 2025
9SAP
DownloadVisualize
BU of 9sap by Molmil
Cryo-EM structure of SARS CoV-2 RdRp wild-type in complex with 20-40mer RNA incorporating Remdesivir
Descriptor: Non-structural protein 7, Non-structural protein 8, RNA primer strand (25-MER), ...
Authors:Oliva, M.F, Das, K.
Deposit date:2025-08-07
Release date:2025-10-01
Method:ELECTRON MICROSCOPY (2.9 Å)
Cite:Structural basis for selective remdesivir incorporation by SARS-CoV-2 RNA polymerase, and S759A resistance.
Biorxiv, 2025
9SAQ
DownloadVisualize
BU of 9saq by Molmil
Cryo-EM structure of SARS CoV-2 RdRp S759A mutant in complex with 20-40mer RNA incorporating ATP
Descriptor: Non-structural protein 7, Non-structural protein 8, RNA primer strand (27-MER), ...
Authors:Oliva, M.F, Das, K.
Deposit date:2025-08-07
Release date:2025-10-01
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:Structural basis for selective remdesivir incorporation by SARS-CoV-2 RNA polymerase, and S759A resistance.
Biorxiv, 2025
9SAR
DownloadVisualize
BU of 9sar by Molmil
Cryo-EM structure of SARS CoV-2 RdRp wild-type in complex with 20-40mer RNA incorporating ATP
Descriptor: Non-structural protein 7, Non-structural protein 8, RNA primer strand (27-MER), ...
Authors:Oliva, M.F, Das, K.
Deposit date:2025-08-07
Release date:2025-10-01
Method:ELECTRON MICROSCOPY (2.8 Å)
Cite:Structural basis for selective remdesivir incorporation by SARS-CoV-2 RNA polymerase, and S759A resistance.
Biorxiv, 2025
8XZ0
DownloadVisualize
BU of 8xz0 by Molmil
Crystal complex structure of SARS-CoV-2 S bound to human ezrin
Descriptor: Ezrin, Spike protein S2'
Authors:Wang, J.M, Ma, W.F.
Deposit date:2024-01-20
Release date:2025-10-08
Method:X-RAY DIFFRACTION (2.035 Å)
Cite:Crystal complex structure of SARS-CoV-2 S bound to human ezrin
To Be Published
8XZ4
DownloadVisualize
BU of 8xz4 by Molmil
SARS-CoV-2 S and radixin complex structure
Descriptor: Radixin, Spike protein S2'
Authors:Wang, J.M, Ma, W.F.
Deposit date:2024-01-20
Release date:2025-10-08
Method:X-RAY DIFFRACTION (2.129 Å)
Cite:SARS-CoV-2 S and radixin complex structure
To Be Published
8XZ5
DownloadVisualize
BU of 8xz5 by Molmil
SARS-CoV-2 S and moesin complex structure
Descriptor: Moesin, Spike protein S2'
Authors:Wang, J.M, Ma, W.F.
Deposit date:2024-01-20
Release date:2025-10-08
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:SARS-CoV-2 S and moesin complex structure
To Be Published
9C7S
DownloadVisualize
BU of 9c7s by Molmil
Cryo EM structure of SARS-COV-2 (BQ 1.1) RBD in complex with Fab COV2-3891 (local refine)
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Fab COV-3891 heavy chain, Fab COV-3891 light chain, ...
Authors:Binshtein, E, Crowe, J.E.
Deposit date:2024-06-11
Release date:2025-10-08
Method:ELECTRON MICROSCOPY (4 Å)
Cite:Cryo EM structure of SARS-COV-2 (BQ 1.1) RBD in complex with Fab COV2-3891 (local refine)
To Be Published

243531

數據於2025-10-22公開中

PDB statisticsPDBj update infoContact PDBjnumon