登録情報 | データベース: PDB / ID: 5zc9 |
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タイトル | Crystal structure of the human eIF4A1-ATP analog-RocA-polypurine RNA complex |
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要素 | - Eukaryotic initiation factor 4A-I
- RNA (5'-R(*AP*GP*AP*GP*AP*GP*AP*GP*AP*G)-3')
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キーワード | TRANSLATION/RNA / INITIATION FACTOR / DEAD-BOX / HELICASE / PROTEIN-RNA COMPLEX / ATPase / ROCAGLAMIDE A / ANTICANCER COMPOUND / TRANSLATION / TRANSLATION-RNA complex |
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機能・相同性 | 機能・相同性情報
Activation of the mRNA upon binding of the cap-binding complex and eIFs, and subsequent binding to 43S / RNA cap binding / eukaryotic translation initiation factor 4F complex / Z-decay: degradation of maternal mRNAs by zygotically expressed factors / cytoplasmic translational initiation / translation factor activity, RNA binding / Deadenylation of mRNA / M-decay: degradation of maternal mRNAs by maternally stored factors / Ribosomal scanning and start codon recognition / Translation initiation complex formation ...Activation of the mRNA upon binding of the cap-binding complex and eIFs, and subsequent binding to 43S / RNA cap binding / eukaryotic translation initiation factor 4F complex / Z-decay: degradation of maternal mRNAs by zygotically expressed factors / cytoplasmic translational initiation / translation factor activity, RNA binding / Deadenylation of mRNA / M-decay: degradation of maternal mRNAs by maternally stored factors / Ribosomal scanning and start codon recognition / Translation initiation complex formation / GTP hydrolysis and joining of the 60S ribosomal subunit / L13a-mediated translational silencing of Ceruloplasmin expression / translation initiation factor activity / helicase activity / translational initiation / ISG15 antiviral mechanism / double-stranded RNA binding / RNA helicase activity / RNA helicase / mRNA binding / ATP hydrolysis activity / RNA binding / extracellular exosome / ATP binding / membrane / cytoplasm / cytosol類似検索 - 分子機能 ATP-dependent RNA helicase eIF4A, DEAD-box helicase domain / DEAD-box subfamily ATP-dependent helicases signature. / ATP-dependent RNA helicase DEAD-box, conserved site / RNA helicase, DEAD-box type, Q motif / DEAD-box RNA helicase Q motif profile. / DEAD/DEAH box helicase / DEAD/DEAH box helicase domain / Helicase conserved C-terminal domain / helicase superfamily c-terminal domain / Superfamilies 1 and 2 helicase C-terminal domain profile. ...ATP-dependent RNA helicase eIF4A, DEAD-box helicase domain / DEAD-box subfamily ATP-dependent helicases signature. / ATP-dependent RNA helicase DEAD-box, conserved site / RNA helicase, DEAD-box type, Q motif / DEAD-box RNA helicase Q motif profile. / DEAD/DEAH box helicase / DEAD/DEAH box helicase domain / Helicase conserved C-terminal domain / helicase superfamily c-terminal domain / Superfamilies 1 and 2 helicase C-terminal domain profile. / Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. / DEAD-like helicases superfamily / Helicase, C-terminal / Helicase superfamily 1/2, ATP-binding domain / P-loop containing nucleoside triphosphate hydrolase類似検索 - ドメイン・相同性 PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER / Chem-RCG / RNA / Eukaryotic initiation factor 4A-I類似検索 - 構成要素 |
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生物種 | Homo sapiens (ヒト) synthetic construct (人工物) |
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手法 | X線回折 / シンクロトロン / 分子置換 / 解像度: 2 Å |
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データ登録者 | Iwasaki, W. / Takahashi, M. / Sakamoto, A. / Iwasaki, S. / Ito, T. |
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引用 | ジャーナル: Mol. Cell / 年: 2019 タイトル: The Translation Inhibitor Rocaglamide Targets a Bimolecular Cavity between eIF4A and Polypurine RNA. 著者: Iwasaki, S. / Iwasaki, W. / Takahashi, M. / Sakamoto, A. / Watanabe, C. / Shichino, Y. / Floor, S.N. / Fujiwara, K. / Mito, M. / Dodo, K. / Sodeoka, M. / Imataka, H. / Honma, T. / Fukuzawa, K. ...著者: Iwasaki, S. / Iwasaki, W. / Takahashi, M. / Sakamoto, A. / Watanabe, C. / Shichino, Y. / Floor, S.N. / Fujiwara, K. / Mito, M. / Dodo, K. / Sodeoka, M. / Imataka, H. / Honma, T. / Fukuzawa, K. / Ito, T. / Ingolia, N.T. |
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履歴 | 登録 | 2018年2月16日 | 登録サイト: PDBJ / 処理サイト: PDBJ |
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改定 1.0 | 2019年1月16日 | Provider: repository / タイプ: Initial release |
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改定 1.1 | 2019年3月13日 | Group: Data collection / Database references / カテゴリ: citation Item: _citation.journal_volume / _citation.page_first / _citation.year |
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改定 1.2 | 2023年11月22日 | Group: Data collection / Database references ...Data collection / Database references / Derived calculations / Refinement description / Structure summary カテゴリ: chem_comp / chem_comp_atom ...chem_comp / chem_comp_atom / chem_comp_bond / database_2 / pdbx_initial_refinement_model / pdbx_struct_conn_angle / struct_conn Item: _chem_comp.pdbx_synonyms / _database_2.pdbx_DOI ..._chem_comp.pdbx_synonyms / _database_2.pdbx_DOI / _database_2.pdbx_database_accession / _pdbx_struct_conn_angle.ptnr1_auth_seq_id / _pdbx_struct_conn_angle.ptnr3_auth_seq_id / _pdbx_struct_conn_angle.value / _struct_conn.pdbx_dist_value / _struct_conn.ptnr2_auth_seq_id |
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