[English] 日本語

Yorodumi

- PDB-7v6w: Crystal structure of heterohexameric Sa2YoeB-Sa2YefM complex boun... -

+
Open data

-
Basic information

Entry

Database: PDB / ID: 7v6w

Title

Crystal structure of heterohexameric Sa2YoeB-Sa2YefM complex bound to 26bp-DNA

Components

Antitoxin
DNA (25-MER)
DNA (26-MER)
Putative mRNA interferase YoeB

Keywords

DNA BINDING PROTEIN/ANTITOXIN/DNA / Toxin-antitoxin-DNA ternary complex / DNA BINDING PROTEIN / DNA BINDING PROTEIN-ANTITOXIN-DNA complex

Function / homology

Function and homology information

RNA catabolic process / endonuclease activity / sequence-specific DNA binding / DNA-binding transcription factor activity / negative regulation of DNA-templated transcription / regulation of DNA-templated transcription
Similarity search - Function

Biological species

Staphylococcus aureus (bacteria)

Staphylococcus aureus subsp. aureus NCTC 8325 (bacteria)

Method

X-RAY DIFFRACTION /

SYNCHROTRON /

MOLECULAR REPLACEMENT / Resolution: 2.55 Å

Authors

Xue, L. / Khan, M.H. / Yue, J.

Funding support

China, 1items

Citation

Journal: J.Biol.Chem. / Year: 2022
Title: The two paralogous copies of the YoeB-YefM toxin-antitoxin module in Staphylococcus aureus differ in DNA binding and recognition patterns.
Authors: Xue, L. / Khan, M.H. / Yue, J. / Zhu, Z. / Niu, L.

History

Deposition	Aug 20, 2021	Deposition site: PDBJ / Processing site: PDBJ
Revision 1.0	Dec 15, 2021	Provider: repository / Type: Initial release
Revision 1.1	Feb 16, 2022	Group: Database references / Category: citation / Item: _citation.journal_volume / _citation.year
Revision 1.2	Nov 29, 2023	Group: Data collection / Refinement description Category: chem_comp_atom / chem_comp_bond / pdbx_initial_refinement_model

-
Structure visualization

Structure viewer	Molecule: MolmilJmol/JSmol

-
Downloads & links

-
Download

PDBx/mmCIF format	7v6w.cif.gz	611.9 KB	Display	PDBx/mmCIF format
PDB format	pdb7v6w.ent.gz	416.5 KB	Display	PDB format
PDBx/mmJSON format	7v6w.json.gz		Tree view	PDBx/mmJSON format
Others	Other downloads

-
Validation report

Summary document	7v6w_validation.pdf.gz	519.9 KB	Display	wwPDB validaton report
Full document	7v6w_full_validation.pdf.gz	526.4 KB	Display
Data in XML	7v6w_validation.xml.gz	34 KB	Display
Data in CIF	7v6w_validation.cif.gz	48.6 KB	Display
Arichive directory	https://data.pdbj.org/pub/pdb/validation_reports/v6/7v6w ftp://data.pdbj.org/pub/pdb/validation_reports/v6/7v6w	HTTPS FTP

-
Related structure data

Related structure data	7v5ySC 7v5zC S: Starting model for refinement C: citing same article (ref.)
Similar structure data	7v6w-2 6l8e-2 4dxe-2 3zkd-3 6l8e-1 3zkb-6 6rh2-d 3zkb-7 1kyq-1 6rh1-d Search similar-shape structures by Omokage search (details) Search similar-shape structures by Omokage search (details) Search similar-shape structures by Omokage search (details) Similarity search - Function & homologyF&H Search Similarity search - FunctionF&H Search Similarity search - HomologyF&H Search

-
Links

PDB pages	PDBj / wwPDB / NCBI
Related items in Molecule of the Month	#67 - Jul 2005 TATA-Binding Protein similarity (1) #168 - Dec 2013 DNA Helicase similarity (1) #255 - Mar 2021 Cisplatin and DNA similarity (1) #91 - Jul 2007 Thymine Dimers similarity (1) #122 - Feb 2010 Enhanceosome similarity (1) #172 - Apr 2014 RecA and Rad51 similarity (1) #181 - Jan 2015 Cascade and CRISPR similarity (1) #253 - Jan 2021 Expressome similarity (1) #112 - Apr 2009 Oct and Sox Transcription Factors similarity (1) #135 - Mar 2011 Integrase similarity (1) #150 - Jun 2012 Sliding Clamps similarity (1) #180 - Dec 2014 TAL Effectors similarity (1) #227 - Nov 2018 Telomerase similarity (1) #48 - Dec 2003 Catabolite Activator Protein similarity (1) #84 - Dec 2006 Transposase similarity (1) #139 - Jul 2011 DNA Methyltransferase similarity (1) #155 - Nov 2012 Vitamin D Receptor similarity (1) #3 - Mar 2000 DNA Polymerase similarity (1) #40 - Apr 2003 RNA Polymerase similarity (1) #73 - Jan 2006 Topoisomerase similarity (1) #87 - Mar 2007 Zinc Fingers similarity (1) #119 - Nov 2009 Designed DNA Crystal similarity (1) #125 - May 2010 Parvoviruses similarity (1) #131 - Nov 2010 Inteins similarity (1) #160 - Apr 2013 Actinomycin similarity (1) #190 - Oct 2015 Two-component Systems similarity (1) #23 - Nov 2001 DNA similarity (1) #240 - Dec 2019 Hypoxia-Inducible Factors similarity (1) #257 - May 2021 Fetal Hemoglobin similarity (1) #258 - Jun 2021 Glucocorticoid Receptor and Dexamethasone similarity (1) #31 - Jul 2002 p53 Tumor Suppressor similarity (1) #33 - Sep 2002 HIV Reverse Transcriptase similarity (1) #39 - Mar 2003 lac Repressor similarity (1) #45 - Sep 2003 Estrogen Receptor similarity (1) #55 - Jul 2004 DNA Ligase similarity (1) #7 - Jul 2000 Nucleosome similarity (1) #8 - Aug 2000 Restriction Enzymes similarity (1) #92 - Aug 2007 Anabolic Steroids similarity (1) #241 - Jan 2020 Twenty Years of Molecules similarity (1)

PDB pages

PDBj /

wwPDB /

NCBI

Related items in Molecule of the Month

#67 - Jul 2005
TATA-Binding Protein
similarity (1)
#168 - Dec 2013
DNA Helicase
similarity (1)
#255 - Mar 2021
Cisplatin and DNA
similarity (1)
#91 - Jul 2007
Thymine Dimers
similarity (1)
#122 - Feb 2010
Enhanceosome
similarity (1)
#172 - Apr 2014
RecA and Rad51
similarity (1)
#181 - Jan 2015
Cascade and CRISPR
similarity (1)
#253 - Jan 2021
Expressome
similarity (1)
#112 - Apr 2009
Oct and Sox Transcription Factors
similarity (1)
#135 - Mar 2011
Integrase
similarity (1)
#150 - Jun 2012
Sliding Clamps
similarity (1)
#180 - Dec 2014
TAL Effectors
similarity (1)
#227 - Nov 2018
Telomerase
similarity (1)
#48 - Dec 2003
Catabolite Activator Protein
similarity (1)
#84 - Dec 2006
Transposase
similarity (1)
#139 - Jul 2011
DNA Methyltransferase
similarity (1)
#155 - Nov 2012
Vitamin D Receptor
similarity (1)
#3 - Mar 2000
DNA Polymerase
similarity (1)
#40 - Apr 2003
RNA Polymerase
similarity (1)
#73 - Jan 2006
Topoisomerase
similarity (1)
#87 - Mar 2007
Zinc Fingers
similarity (1)
#119 - Nov 2009
Designed DNA Crystal
similarity (1)
#125 - May 2010
Parvoviruses
similarity (1)
#131 - Nov 2010
Inteins
similarity (1)
#160 - Apr 2013
Actinomycin
similarity (1)
#190 - Oct 2015
Two-component Systems
similarity (1)
#23 - Nov 2001
DNA
similarity (1)
#240 - Dec 2019
Hypoxia-Inducible Factors
similarity (1)
#257 - May 2021
Fetal Hemoglobin
similarity (1)
#258 - Jun 2021
Glucocorticoid Receptor and Dexamethasone
similarity (1)
#31 - Jul 2002
p53 Tumor Suppressor
similarity (1)
#33 - Sep 2002
HIV Reverse Transcriptase
similarity (1)
#39 - Mar 2003
lac Repressor
similarity (1)
#45 - Sep 2003
Estrogen Receptor
similarity (1)
#55 - Jul 2004
DNA Ligase
similarity (1)
#7 - Jul 2000
Nucleosome
similarity (1)
#8 - Aug 2000
Restriction Enzymes
similarity (1)
#92 - Aug 2007
Anabolic Steroids
similarity (1)
#241 - Jan 2020
Twenty Years of Molecules
similarity (1)

-
Assembly

Deposited unit

F: Putative mRNA interferase YoeB

B: Antitoxin

C: Antitoxin

A: Antitoxin

E: Putative mRNA interferase YoeB

M: Putative mRNA interferase YoeB

L: Antitoxin

I: Antitoxin

K: Antitoxin

N: Putative mRNA interferase YoeB

D: Antitoxin

J: Antitoxin

G: DNA (26-MER)

H: DNA (25-MER)

P: DNA (25-MER)

O: DNA (26-MER)

153 kDa, 16 polymers
Search similar-shape structures of this assembly by Omokage search (details)

F: Putative mRNA interferase YoeB

B: Antitoxin

C: Antitoxin

A: Antitoxin

E: Putative mRNA interferase YoeB

D: Antitoxin

G: DNA (26-MER)

H: DNA (25-MER)

defined by author&software
Evidence: light scattering
76.7 kDa, 8 polymers
Search similar-shape structures of this assembly by Omokage search (details)

M: Putative mRNA interferase YoeB

L: Antitoxin

I: Antitoxin

K: Antitoxin

N: Putative mRNA interferase YoeB

J: Antitoxin

P: DNA (25-MER)

O: DNA (26-MER)

defined by author&software
76.7 kDa, 8 polymers
Search similar-shape structures of this assembly by Omokage search (details)

Unit cell

Length a, b, c (Å)	236.609, 66.358, 129.098
Angle α, β, γ (deg.)	90.000, 90.000, 90.000
Int Tables number	18
Space group name H-M	P2₁2₁2
Space group name Hall	P22ab
Symmetry operation	#1: x,y,z #2: x+1/2,-y+1/2,-z #3: -x+1/2,y+1/2,-z #4: -x,-y,z

-
Components

#1: Protein	Putative mRNA interferase YoeB / Toxin YoeB Mass: 10808.412 Da / Num. of mol.: 4 Source method: isolated from a genetically manipulated source Source: (gene. exp.) Staphylococcus aureus (strain NCTC 8325 / PS 47) (bacteria) Strain: NCTC 8325 / PS 47 / Gene: SAOUHSC_02756 / Production host: Escherichia coli BL21(DE3) (bacteria) / References: UniProt: Q2FVF8
#2: Protein	Antitoxin / Sa2YefM Mass: 9783.692 Da / Num. of mol.: 8 Source method: isolated from a genetically manipulated source Source: (gene. exp.) Staphylococcus aureus (strain NCTC 8325 / PS 47) (bacteria) Strain: NCTC 8325 / PS 47 / Gene: SAOUHSC_02757 / Production host: Escherichia coli BL21(DE3) (bacteria) / References: UniProt: Q2FVF7
#3: DNA chain	DNA (26-MER) Mass: 7978.151 Da / Num. of mol.: 2 / Source method: obtained synthetically Source: (synth.) Staphylococcus aureus subsp. aureus NCTC 8325 (bacteria)
#4: DNA chain	DNA (25-MER) Mass: 7996.180 Da / Num. of mol.: 2 / Source method: obtained synthetically Source: (synth.) Staphylococcus aureus subsp. aureus NCTC 8325 (bacteria)
#5: Water	ChemComp-HOH / water Mass: 18.015 Da / Num. of mol.: 113 / Source method: isolated from a natural source / Formula: H₂O

-
Experimental details

-
Experiment

Experiment	Method: X-RAY DIFFRACTION / Number of used crystals: 1

-
Sample preparation

Crystal	Density Matthews: 3.31 Å³/Da / Density % sol: 62.85 %
Crystal grow	Temperature: 289.15 K / Method: vapor diffusion, sitting drop Details: 0.02 M Magnesium chloride hexahydrate, 0.05 M Sodium cacodylate trihydrate pH 7.0, 15% v/v 2-Propanol, 0.001 M Hexamine cobalt (III) chloride, 0.001 M Spermine

-
Data collection

Diffraction	Mean temperature: 100 K / Serial crystal experiment: N
Diffraction source	Source: SYNCHROTRON / Site: SSRF / Beamline: BL17U1 / Wavelength: 0.97918 Å
Detector	Type: ADSC QUANTUM 315r / Detector: CCD / Date: Jan 13, 2019
Radiation	Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray
Radiation wavelength	Wavelength: 0.97918 Å / Relative weight: 1
Reflection	Resolution: 2.55→50 Å / Num. obs: 66262 / % possible obs: 98.6 % / Redundancy: 6.6 % / CC_1/2: 0.993 / Net I/σ(I): 17.4
Reflection shell	Resolution: 2.55→2.59 Å / Num. unique obs: 3168 / CC_1/2: 0.79

-
Processing

Software

Name	Version	Classification
PHENIX	1.15.2_3472	refinement
HKL-2000		data reduction
HKL-2000		data scaling
PHENIX		phasing

Refinement

Method to determine structure:

MOLECULAR REPLACEMENT
Starting model: 7V5Y

7v5y

Resolution: 2.55→49.95 Å / SU ML: 0.3093 / Cross valid method: FREE R-VALUE / σ(F): 1.34 / Phase error: 24.9852
Stereochemistry target values: GeoStd + Monomer Library + CDL v1.2

	R_factor	Num. reflection	% reflection
R_free	0.2309	3328	5.03 %
R_work	0.1906	62825	-
obs	0.1926	66153	98.04 %

Solvent computation

Shrinkage radii: 0.9 Å / VDW probe radii: 1.11 Å / Solvent model: FLAT BULK SOLVENT MODEL

Displacement parameters

B_iso mean: 59.92 Å²

Refinement step

Cycle: LAST / Resolution: 2.55→49.95 Å

	Protein	Nucleic acid	Ligand	Solvent	Total
Num. atoms	7595	2083	0	113	9791

Refine LS restraints

Refine-ID	Type	Dev ideal	Number
X-RAY DIFFRACTION	f_bond_d	0.0025	10066
X-RAY DIFFRACTION	f_angle_d	0.4753	14048
X-RAY DIFFRACTION	f_chiral_restr	0.0392	1563
X-RAY DIFFRACTION	f_plane_restr	0.0021	1443
X-RAY DIFFRACTION	f_dihedral_angle_d	19.8779	5732

LS refinement shell

Resolution (Å)	R_factor R_free	Num. reflection R_free	R_factor R_work	Num. reflection R_work	Refine-ID	% reflection obs (%)
2.55-2.59	0.3332	138	0.2735	2728	X-RAY DIFFRACTION	87.27
2.59-2.64	0.3035	144	0.2759	3062	X-RAY DIFFRACTION	95.5
2.64-2.69	0.3584	162	0.2822	3018	X-RAY DIFFRACTION	96.39
2.69-2.74	0.3195	134	0.2752	3080	X-RAY DIFFRACTION	96.63
2.74-2.8	0.3031	150	0.2559	3089	X-RAY DIFFRACTION	97.27
2.8-2.87	0.3106	165	0.2461	3082	X-RAY DIFFRACTION	97.27
2.87-2.94	0.2877	153	0.2462	3105	X-RAY DIFFRACTION	98.43
2.94-3.02	0.2743	173	0.2318	3179	X-RAY DIFFRACTION	98.79
3.02-3.11	0.2838	175	0.2237	3090	X-RAY DIFFRACTION	99.18
3.11-3.21	0.24	173	0.213	3157	X-RAY DIFFRACTION	99.08
3.21-3.32	0.276	188	0.2057	3153	X-RAY DIFFRACTION	98.85
3.32-3.46	0.2063	170	0.1777	3137	X-RAY DIFFRACTION	99.16
3.46-3.61	0.2034	159	0.1766	3192	X-RAY DIFFRACTION	99.82
3.61-3.8	0.2387	182	0.1882	3177	X-RAY DIFFRACTION	99.44
3.8-4.04	0.2244	178	0.184	3190	X-RAY DIFFRACTION	99.59
4.04-4.35	0.1905	169	0.1548	3190	X-RAY DIFFRACTION	99.2
4.35-4.79	0.1843	179	0.1478	3238	X-RAY DIFFRACTION	99.91
4.79-5.49	0.2196	164	0.1676	3264	X-RAY DIFFRACTION	100
5.49-6.91	0.2199	178	0.1899	3285	X-RAY DIFFRACTION	99.97
6.91-49.95	0.1939	194	0.1622	3409	X-RAY DIFFRACTION	98.6

Refinement TLS params.

Method: refined / Refine-ID: X-RAY DIFFRACTION

ID	L11 (°²)	L12 (°²)	L13 (°²)	L22 (°²)	L23 (°²)	L33 (°²)	S11 (Å °)	S12 (Å °)	S13 (Å °)	S21 (Å °)	S22 (Å °)	S23 (Å °)	S31 (Å °)	S32 (Å °)	S33 (Å °)	T11 (Å²)	T12 (Å²)	T13 (Å²)	T22 (Å²)	T23 (Å²)	T33 (Å²)	Origin x (Å)	Origin y (Å)	Origin z (Å)
1	3.10007632666	-0.943631933027	-2.50361220296	5.38175660038	0.0180162089569	3.66207236095	-0.540648231363	-0.261926616702	0.882471733682	0.645245761293	0.0370705106065	0.0169606903699	-0.0969226961404	1.25375733326	0.264021359569	0.514387810903	-0.144433974184	-0.0287988336141	0.475397547683	-0.291297203133	0.607769762849	284.470973162	30.4407814153	66.9221947111
2	3.32047625069	0.000630920413033	-0.358896905835	2.80007012215	-0.0647034596631	3.4391807041	-0.0287420819572	-0.668363793883	0.24182771918	0.434913770348	-0.109460845872	0.101583888726	-0.40818642394	0.113564042439	0.141477064509	0.411965732678	-0.0746541520995	0.0236808636538	0.412532432946	-0.139832972666	0.391709293229	276.795330534	21.338036751	68.3461291581
3	1.67494252454	-0.474229718858	0.84969420746	2.39546864785	0.149507384182	3.05474896547	0.109180611569	-0.113672031418	0.292843669729	0.0294950860138	0.0431156097958	0.166717463272	-0.599720673497	0.168314026738	-0.137212429736	0.372567251044	-0.0627510570265	0.0466478117999	0.306569493965	-0.134391503613	0.433991896481	276.297595766	21.6973420578	61.1413983112
4	2.3871635654	0.889429693537	-2.85674998994	3.20040864663	0.622141082339	4.35014374862	-0.224932849211	0.245230846448	-1.01594324336	0.18896510324	0.304810551981	0.0590675195445	-0.102735231512	-0.498985266888	-0.222299946705	0.379583377127	-0.0377165261256	0.0287628062753	0.647574086521	0.140198045655	0.463111472096	276.780583685	-7.66387391602	82.9015994022
5	3.12124835665	-2.62276797743	-0.431049143952	5.8311275264	1.41846153124	7.21424640711	-0.0347052156356	-0.691143023791	-0.695809556956	0.363472896671	0.469422509065	0.601248475397	0.253898964118	-0.42394518024	-0.345406724107	0.374488703503	-0.055490013639	0.0380854499188	0.511634069205	0.0989430753851	0.498139972993	271.939203503	-8.66957405479	76.8448166069
6	1.40319192959	-0.74629267485	-0.0528052218683	6.57143823975	4.58753729268	9.76335219197	-0.312424563122	-0.808195823547	0.802478528433	0.00412338831665	0.1007004565	0.604340356399	-0.624850621136	0.00835588396148	0.0697321815184	0.351088771052	0.0465589626677	0.0467865698062	0.475125268534	-0.0579494069713	0.370719353968	274.206202804	1.19534477136	77.8414178247
7	6.31709617662	-4.4386198103	1.49950926812	7.93302533222	-3.11186413117	4.14460435294	0.326101146771	-0.162713670091	0.114532267246	0.167763304079	-0.253679990157	0.0700736068654	0.273920581442	-0.49648239813	-0.0785646778394	0.303809412954	-0.0487505916838	-0.0413756451242	0.431669624699	-0.0931250842651	0.541949924004	263.29331982	1.7252504553	63.6958861461
8	9.20058167697	0.44914099823	-0.37862953198	0.841871263518	-0.183548159208	3.92437388601	-0.509966610903	-1.011921331	0.248873326505	0.238198776917	0.437839534318	0.354108332143	-0.442933375858	-0.0349258280139	-0.0357151420945	0.35055415899	0.0521630497833	0.00745912783415	0.323474523363	-0.0257967546668	0.526805986111	250.198495377	11.5226508259	61.2099565127
9	0.131616690498	-0.188458663172	-0.196838677671	7.34221612105	5.75284868354	4.43941513615	-0.449768574018	0.385243190793	0.0611352630805	0.279320262455	-0.147059307455	0.507514943594	0.381862532103	0.399442554229	0.328811095022	0.291949752581	0.0381938067506	0.0154493825918	0.508736742824	0.0894084678073	0.681339080971	238.984255176	8.88047528509	52.8093100525
10	9.47783603577	4.3350961853	0.306799962552	5.33008375334	1.49415573895	7.0626553912	-0.186049955035	1.47475273418	0.222818679029	-0.366018397485	-0.0183197297135	0.89512009909	-0.600893946781	-0.720250623058	0.144120558725	0.406997120501	-0.044348698761	-0.0521459040298	0.620911622469	0.113579227464	0.693819974892	244.881735442	8.05121598752	39.8602151545
11	6.26647977122	2.13314311791	4.8097385919	7.29515842502	-1.44658336123	5.88892063078	0.665609242289	0.19321495629	-0.264880536469	-0.0909058897441	0.205441570762	0.530000204613	-0.502524247544	-0.664030546872	-0.504099960947	0.381641601217	0.0347049175065	0.0541228296526	0.563091361917	-0.0918945288859	0.406452376365	274.123858348	-7.92740557393	56.7635065964
12	3.16053785852	-1.70177378829	-0.362380993857	4.15392583015	0.444766664114	2.66952519231	-0.0987017388257	-0.279296173065	-0.103304238836	0.219363460465	0.103150271292	0.348753691698	0.436704281879	-0.323639978544	0.0224673639529	0.345389580735	0.0256211011487	-0.0374758370829	0.301854893005	-0.0431058736362	0.391821269218	274.062184337	-9.3758762778	49.5507682866
13	5.99260641647	0.789337633028	4.85950241284	6.67146884082	0.299284569307	4.18804514117	0.583810554581	-0.198758330752	0.220769302994	0.589762193221	-0.397002572105	-0.529332868977	-0.46213625625	0.524024997827	0.147846045085	0.320565850704	-0.0447378796426	-0.0161278931615	0.484844756559	-0.0680426566541	0.390858409785	281.146163306	-2.09325405191	52.161959405
14	7.61069164008	1.3796693105	-0.607905795305	2.1634063345	1.77311211999	7.8146277417	0.157856362118	0.0321334868664	0.296871973216	-0.168425303758	0.0255314625338	0.920031576667	-0.625639153799	0.105777445744	-0.273134327275	0.340751285458	-0.0269721277138	-0.062836660918	0.389534969201	-0.0924703123891	0.361853769036	269.952297342	10.4823307387	44.1427875435
15	2.78919558361	-1.36037070571	0.637376344051	9.20065392276	-4.80816111812	2.44915045456	-0.368305598454	0.137436099738	0.206202053943	0.0562020801297	-0.0450205771827	-1.24947414178	0.207072434009	0.496668323724	0.23472962711	0.369086020876	0.0504962023049	-0.00920338755459	0.464340943253	-0.0548791130137	0.341651864314	283.635682395	-5.50840161651	68.0536721007
16	6.23842353601	-3.41071720819	0.414935124281	7.52369088017	-3.31365108647	4.4356972559	-0.0074780613968	-0.384414096047	0.45535516021	0.106787010786	0.0785270876341	-0.156882539814	-0.054320311769	-0.0333698987251	-0.229619139002	0.347310263047	0.00228931252769	-0.0597969062507	0.470665720308	-0.0922045648899	0.387077880968	281.947870202	2.81494724285	75.4350214438
17	2.30973507799	0.988650563306	0.086187076258	6.54839651865	2.78442227411	3.19447272972	-0.0145595530136	0.207359961644	-0.17238361497	-0.454349607372	0.14134679239	0.468136497874	0.00538961515221	0.0654399065339	-0.228857452673	0.332493862653	0.0407573365899	-0.0518388121411	0.406634481395	-0.0264038661584	0.383462315911	275.460671039	-4.25021334391	67.225413981
18	2.97729387003	-3.20600140156	2.69630953606	5.33334062554	-1.15884908988	4.6667144577	-0.170835438753	-0.779115660728	0.102741741542	-0.0487162895234	-0.0488749566034	0.396285420563	-0.228374564628	-0.0483242015107	0.239264123966	0.349318481275	-0.0479947847344	0.0662757513002	0.532688811547	-0.0957532474573	0.559616737601	261.301690316	7.38388735195	74.5928287789
19	3.08552112937	0.543320426067	-1.94304157221	3.22852495598	-1.43597002087	3.74687672748	-0.01475046806	0.342088406651	0.120393755933	-0.347171404243	0.0486701099754	0.526432234183	0.0798950246161	0.100810624918	-0.0453912086262	0.206749996334	-0.0389171807037	-0.0884100621031	0.388251566116	-0.0549791647418	0.52615255125	249.51776509	2.97259368157	45.6192435121
20	1.94185071075	-0.226852564041	0.513973192116	1.08814023165	-0.301762360807	2.25802443521	0.0951780666697	0.0673339651728	-0.0409911746834	0.197948983096	-0.0151480195237	0.190370458837	0.0456550044127	0.0204960273499	-0.0580554918206	0.256534424128	-0.0438216624251	0.0241057027265	0.361517297822	-0.0478401717565	0.506182229332	252.903219314	0.215282135211	56.5778320296
21	3.42179562679	1.05869971242	1.41562301432	2.51573476959	-0.671085435849	2.47984742144	-0.0280879660108	0.51552636933	-0.750973624162	-0.625067387822	-0.370419677416	0.401257938075	0.645831310732	-0.25900195951	0.365830180064	0.864782013641	0.0187380659286	-0.0696771193127	0.512272764102	-0.318069621393	0.738125562361	271.638288545	-31.9696474729	-3.79513328359
22	3.23421099817	-0.202094953628	-0.964820345702	3.11549339703	0.324888556754	2.27908021135	0.0249054465257	0.30507976022	-0.145247978671	-0.505386856801	0.0590970635628	-0.273826010768	0.292926324521	0.37568910563	-0.0560002070421	0.660253587519	0.13576016038	-0.0619689399421	0.416584393638	-0.104061655881	0.462395699604	279.030565661	-22.6724019347	-2.34342567678
23	1.34345244944	0.898738360396	-0.817568520932	1.64406587799	0.576545552219	2.1152707506	-0.115539906984	-0.090462048475	-0.159952966715	0.0248379724824	0.0652188027285	-0.0924899760756	0.329942355893	-0.0942531208725	0.00463647503704	0.568731587461	0.0774183066754	-0.0512048946147	0.380999451562	-0.160712860808	0.498104443523	274.140178228	-25.1200832345	3.96418490237
24	8.42049194097	-1.44790780643	1.08332903146	4.73231573002	0.559466175432	4.80926717419	0.05340857689	0.343638511898	0.224176795606	-0.36658618029	0.592132118178	0.0438080625019	0.520449238316	0.0104950901539	-0.570069201378	0.561040339325	0.0936328749549	-0.00964177071907	0.609938837931	-0.00237415336809	0.324595190461	277.167397301	4.17894982193	-17.6953938888
25	5.5182337013	1.66693421383	-1.14687661917	6.2015549411	2.03326825355	6.74438444634	0.174856589918	0.613304360606	0.5422501971	-0.177799055481	0.326293848732	0.450138665253	-0.306594266046	-0.53939071931	-0.535838440709	0.509918118519	0.125435265985	-0.0499053127714	0.60896005839	0.00918652215958	0.473701247645	272.835816969	3.01036027724	-11.9072409821
26	8.78725551849	3.93154708998	-2.58441968812	2.97460408867	-3.67446537253	6.70966804954	0.523747988654	-0.0315658764	0.396949459948	-0.535334751713	-0.440658746336	0.630163090343	-0.25972644402	-0.66101037017	-0.221575381138	0.377115624523	0.0443296779809	0.00450258884171	0.545066097292	-0.112681926418	0.447872202217	262.962925383	-4.05999129136	1.49822072841
27	7.45759826298	-1.30643611885	-0.577178523079	2.67260733618	0.111243941211	4.64185817119	-0.0675997819115	1.05437360194	-1.0250059028	0.170641093503	0.182879471253	0.407610028698	0.473723258119	-0.698118886659	-0.266332823583	0.536813976255	-0.062196327307	-0.120240362525	0.448971411285	-0.0870793353045	0.620880388919	249.160134714	-12.5476273309	4.06430328723
28	3.95626389868	-0.965590527734	1.54224943688	3.50000127741	1.27549739041	3.78039885553	-0.384047290053	-0.187076427015	-0.0634060408991	0.153581553432	0.198325086548	0.64002076152	0.21597204748	-0.053989944795	0.0612323399472	0.347554352472	-0.0799447838962	0.112083758048	0.590595101194	0.019094436153	0.755841248795	241.899365428	-8.86920799111	20.1894708436
29	2.28094567918	2.63640465276	-0.723559118895	3.77352912215	-0.613680658523	4.12657033788	-0.0375848298602	0.239106515279	0.0731405437639	-0.450661619737	0.151681793091	0.00778451487086	-0.275413078936	0.268976756914	-0.0928487350303	0.347212871697	-0.0273368502604	0.0677072398148	0.380322970268	-0.0798198317671	0.371782731031	276.074305271	5.05475877815	14.1460674777
30	4.3275983152	0.433930174724	-2.80263570764	3.63711762128	-0.0403659705824	5.84070869261	0.0609805161583	-0.543339682642	0.0651909720279	0.104323405104	-0.339833987581	0.3518640139	0.433370347366	0.106586298322	0.260859420851	0.358720418194	0.0203420299312	0.013749170529	0.348076090953	-0.111223413384	0.353927789036	270.258319342	-11.099899606	20.0523910014
31	2.02001582146	2.46353921491	0.0164299721674	6.01605616106	-0.760046914395	1.18658081476	0.283949771554	0.0560669088885	-0.490338235001	0.257295921786	-0.329933041611	-0.505714096604	0.168145736697	0.270122294751	0.0628354017724	0.56838674013	0.0921972465379	-0.0315571614283	0.50621635909	-0.103817590601	0.418673578014	282.530581575	-2.97862470373	-6.26780916328
32	2.47916197829	2.51997391684	1.91910168528	2.61115186576	2.05659373345	7.0971151119	0.36355595279	0.29235554567	-0.358908389918	0.508596306531	0.333852610642	-0.168810176772	0.259219243245	-0.297952627452	-0.524691683861	0.492842067735	-0.00184514046774	-0.0565295013014	0.449493673588	-0.0330985226824	0.452774962787	275.478607149	-5.48342104587	-1.92514120391
33	5.0117172804	-0.518528494467	1.54444466942	0.119404917361	-0.404844591325	5.31094422361	-0.246766402617	-0.234982270764	0.307403191892	0.0369165745987	0.371826083264	0.237865149518	-1.21624914006	0.36660380184	-0.0442326763673	0.62944079673	-0.0183990016455	0.09640778314	0.609485687476	-0.118177921711	0.43731936804	275.324290012	5.82048250907	-1.96695475409
34	2.30249509656	2.94490054232	-1.21587143398	3.84321578109	-0.950214366392	3.34742041454	-0.105373776696	1.3713208038	-0.515766808783	-0.183824264297	0.145741230258	0.600159021778	0.374860876616	-0.833730437042	-0.157248467615	0.539435667692	-0.00347801401147	-0.158966145836	0.678051827684	-0.102634655363	0.568688915898	260.580974747	-9.16282962655	-9.26237062925
35	2.81452710512	0.0575407145716	1.29314152862	3.13478497156	-1.12337900897	2.20501511253	-0.00867055914577	-0.170842283471	0.203957085676	0.195200860216	0.0667098067172	0.153116173704	-0.0737006812981	0.191108673584	-0.0517760496318	0.309016114106	-0.033464496166	0.0749624998913	0.491961791503	-0.0565827211016	0.54111710185	249.579254499	-4.39315736169	19.3521576147
36	3.4927785898	1.35270120985	2.8310428559	4.73547501062	1.6941210303	2.96451321302	0.0705705636214	-0.0471346734163	0.246556047873	-0.462665429242	0.503995123798	-0.225623392971	-0.297417803094	0.794701895198	-0.62181756696	0.28587317804	-0.0556583394159	0.0212757061192	0.441505322681	-0.0518246048482	0.433221908266	255.829960308	4.04965829605	7.59866225036
37	2.8926755154	1.87431566413	1.70748859012	5.30286990235	-1.66601742047	2.88465348439	0.837788991964	-0.0237829376947	-0.0798726751723	-0.669500839329	0.214179975435	1.02369782388	-0.0884569125702	-0.785545481547	-0.565891343532	0.395134199406	-0.00520458299138	-0.0440315068254	0.555416877348	0.0334150893759	0.598515327531	249.927409681	-0.372460538534	-1.80799248102
38	2.48508966226	-0.638499206809	-0.294645094894	2.70667610394	-0.503693938363	1.52418435178	0.102330194887	-0.173153923383	-0.017031161429	-0.00608150717865	0.105001493054	0.361781371662	-0.145726923565	0.00380806057544	-0.165264580021	0.313881669971	-0.0306058592669	-0.000428572004519	0.438212968324	-0.137354308376	0.475893298031	250.926628968	-1.32451551579	10.4918776159
39	1.61586493451	1.24480488903	-0.300489673427	5.73598104518	5.98702590192	8.32265961353	-0.697321385248	0.345199565383	-0.673569139539	-0.0323229685259	0.169781385938	0.236131782944	1.24838550595	0.0931926430274	0.134588298056	0.504612201552	-0.0215569818143	0.0316816601423	0.63764729767	-0.131465311995	0.756735383245	256.651362672	-16.0377755532	12.1896449068
40	4.42667725388	2.92015845015	1.19639121212	9.71190686398	-4.18540811679	5.66381610659	0.194392072344	0.505652242849	-0.101291984096	-0.617028742801	0.00205406634857	-1.15279690346	0.659510505089	0.609469254019	-0.214713373317	0.389251891029	0.0545418212483	0.0768008956	0.405391325188	-0.148112499071	0.389092935092	281.583972212	-7.86917029815	37.8709993674
41	2.51422780544	-0.222774618997	1.95809806908	3.33559662002	1.30620145918	4.36708579681	-0.0409322758777	0.0465760231517	0.173691101971	0.230775392499	0.492759544042	-0.65332851502	-0.2259542822	1.07900616349	-0.375295773459	0.307954475649	-0.0648237066132	0.00108475267721	0.5848940499	-0.134411193003	0.458205388342	285.210870057	-1.4612168391	45.2469574893
42	3.9505816144	4.75517686073	4.17171061056	7.47694149467	5.3750418404	4.56208078012	0.329343598966	-0.118092615998	0.301640490155	-0.25518289218	-0.430800338135	0.53875996963	0.227998829258	-0.440971522874	0.187198541413	0.290038569633	0.00288821869268	-0.0174966197411	0.383567484049	-0.0720244220653	0.396266495846	272.177682568	-3.88245927637	39.7028875027
43	6.61479217124	-3.32551573689	-4.72820964291	7.94253178507	3.35098167847	4.88892279285	-0.0181230344463	-0.35700666444	0.139215442051	0.304617203437	0.213009328365	-0.194271775133	-0.441123438302	0.766701771048	-0.142715529137	0.291761697316	-0.0426105914199	-0.0591757406473	0.325560483783	-0.0870392361601	0.369460223762	274.142570261	9.71955240053	55.1280270941
44	2.17216321621	2.78926818354	1.43759988455	6.22557901369	3.25252993204	2.69383420931	-0.0922886066702	0.199757010547	0.535295426549	-0.651391838854	0.0853030313034	0.28816269574	-0.598023438756	0.212902065422	0.0644820676562	0.514915581565	-0.0507343908647	0.000748859260463	0.324443863179	-0.0644215791966	0.623929338363	270.165559815	28.6413807749	57.3953173189
45	5.61524952682	-0.871559911119	-2.64541662763	4.34179366834	-0.520424905628	5.71787328601	0.0494972101709	-0.75391685383	0.958505365535	0.0243015821492	-0.0530611830115	-0.396487227245	-0.621685247615	-0.300188080526	-0.105601644372	0.764957960646	-0.0921495817898	0.134403222043	0.52858738144	-0.297946755575	0.637334720969	273.552266165	33.0598339823	75.6900140386
46	2.56016938731	-2.3924603059	-2.26834751666	2.68987793124	0.273207468447	9.52162177604	0.401841983368	-0.444259396608	-0.761561558371	-0.482431998238	-0.0694187664744	-0.11637202466	-0.0344915324929	0.351640332519	-0.203027158694	0.256286425257	0.106238668588	-0.0208604827274	0.503679765474	-0.10103745285	0.495518685782	281.075333748	-2.64995986663	29.2666946971
47	4.78901556949	-2.85337158026	-2.30640612273	4.94850551716	0.84171116412	2.79706424908	-0.0675334148847	-0.414524447097	0.039941654514	0.405491510201	0.36286620664	-0.893655455512	0.263555791726	0.833022159894	-0.15212703161	0.427932242028	0.000285680082273	0.00275792832273	0.529822104877	-0.119506486897	0.478448595979	285.741280824	2.97114988279	21.1245221357
48	7.6275728332	0.0448883361664	-4.01096906364	3.07374212699	1.3229269107	8.43078881836	-0.423638071538	-0.271923557447	-0.434427872695	0.544037603662	0.278543235187	-0.0844630532754	0.538067923972	0.399674467596	0.149122077912	0.402288928326	0.0165699068366	0.0114190380496	0.319933586635	-0.0278261794339	0.376947182532	278.783070897	-3.22500193389	25.2060996597
49	1.08154688711	-0.040901121355	-0.876943380026	6.34798619337	0.764728690518	8.50975526323	-0.247961249765	-0.599794191268	-0.0798445586703	0.129566616376	-0.00621182322687	0.300995521468	-0.018707268571	-0.265354553821	0.366624187704	0.296697868348	0.0107923283838	0.0673380574506	0.438489115541	-0.146655095315	0.482037975315	272.947377683	-0.951571771386	23.1782565657
50	9.47988770136	5.5420957395	4.01937761738	8.39169349143	2.83573365653	4.00857117073	-0.357386531765	-0.118317434917	-0.351405453377	-0.723251465165	0.320964005744	-0.142679851768	0.609624695522	0.468673607082	-0.0588293498717	0.492525917903	0.00575213185017	-0.0268147828861	0.4382708544	-0.122087765385	0.384912224731	273.248030054	-13.0355614746	10.0191921757
51	3.51669722114	-2.38004590541	1.6624079601	5.66877271773	0.0758127371189	4.39501373351	-0.109394406901	-0.313267315467	-0.0997067618486	0.804200976196	-0.179964542506	0.587772356599	0.239471172042	-0.50082142424	0.10510394693	0.682286815305	-0.10475565744	0.00356233273317	0.415290692398	-0.12424779712	0.636208462897	265.90768391	-27.0583758873	9.47442271892
52	0.137841611524	0.145253521786	0.1418303305	0.136145463663	0.185775026652	0.198826360237	0.489354322532	0.0308172030708	-0.363404269464	-0.324696504566	-0.087823942261	0.337931680601	0.618787522696	0.307812925885	-0.00806687563301	1.33808280414	-0.0133474212146	-0.243409831264	0.475939459366	-0.114166380851	1.20675101478	269.978991488	-38.9277916347	5.17148128428
53	4.36545275726	0.115299787916	2.79642920963	3.63338526516	0.380456790049	5.88693819568	-0.761247714499	1.02218292357	-0.548452448273	-0.339038977617	0.415803236409	-0.313613258109	-0.315281509888	0.157705587733	-0.0138811153134	1.32215440567	-0.0197024092984	-0.193198714855	0.652923577305	-0.302587826655	0.856412447643	269.974316411	-35.9844661229	-10.5208423297
54	3.66166178124	-1.02646511529	-0.824258485083	4.54320815486	2.74187147688	5.57017936657	-0.0323136749129	-0.445230502595	0.224830777758	0.630255258886	0.254468140156	-0.301902360956	0.338993640312	-0.377369187507	-0.128327330844	0.463661551298	0.0443877889525	-0.0031934612427	0.491853784889	-0.0266891277826	0.278062767986	290.864415572	-8.20251479799	83.4984678727
55	2.85726215165	-0.157642360582	1.436742086	1.4834679584	0.427807230469	3.69824715481	0.401909469412	0.548689114217	-0.506435195229	-0.206452979446	0.303358411112	-0.0932373004602	0.865206423632	0.217774222038	-0.696365065931	0.73496876926	0.140280104553	-0.139162886695	0.499199641401	-0.151881409686	0.491596927276	283.40575179	-22.0817608339	46.7177641398
56	4.05819388948	-0.786951243292	1.52426909046	3.39860831997	0.155452956763	5.23341632028	0.36471578348	0.914827495328	-0.721346314382	-0.70234683393	0.0569101349289	0.443537723677	0.72555471589	1.35925811036	-0.169347131217	0.769380364271	0.0590997653753	-0.216826947774	0.616450238225	-0.112409085014	0.450576223821	279.788637714	-21.7331356425	38.7938481627
57	1.22974732881	-0.135596814336	0.762025285607	2.97849932391	1.15861433474	4.02563752675	0.477548410699	-0.127618125342	-0.126571542696	0.27945460864	0.139865200728	-0.335280820182	0.433967873613	0.512490465936	-0.550371248304	0.419443786319	0.0998847052225	-0.0989975166119	0.621348765805	-0.122015791978	0.440208288996	291.392371696	-13.9410549643	74.8662544402
58	2.25747054414	1.16374855153	-2.36276294321	2.71721874786	1.55128198151	6.23893702808	0.597792921932	-0.102303452188	-0.412407418869	-0.0919841162139	1.21610352011	1.36094246381	-0.598343720341	-0.575493941912	0.754231026653	0.800847951384	0.272540213155	-0.0353687801863	0.999969396333	-0.349206302624	0.254807103674	286.866789475	0.0152069945967	-25.0129642389
59	6.69748645268	2.04398805207	0.678952316709	2.13316516987	3.02470902959	5.66139024806	0.423961911292	0.0549167281328	0.132136682346	0.674588520423	0.358904326087	-1.11417068613	-0.523559257095	0.123867155458	-0.615786663242	0.712868206643	0.0256720823706	-0.0125677272809	0.645472288304	-0.0903861477362	0.392733325659	295.412445772	7.29154749631	-11.6890881722
60	2.8447470573	-0.489510374416	-1.76354587913	2.02522270985	0.677489413323	2.89295124616	0.389498936228	-0.55575963537	0.493960339942	0.0302790063871	0.52154085157	-0.159803312252	-0.934290463384	0.922377665278	-0.818175247118	0.849653701903	-0.229427133126	0.195088838789	0.552093039434	-0.179088068879	0.519542052807	285.324850782	17.7678658644	18.746708666
61	5.90086665611	1.48027154617	-2.74698777586	3.42749422766	-0.792105322273	4.84414655342	0.145169681611	-0.692396834936	0.29177219175	0.044457206514	0.167374229401	0.0406947173869	-0.4849218314	0.877657427991	-0.349491771616	0.818656041823	-0.126976821376	0.230371917111	0.546286777782	-0.0846947195001	0.453346172814	281.687080187	17.8550524126	26.4136312379
62	1.89975652825	-0.257833405223	2.73246847209	4.07189031944	2.41667605669	5.85168448875	1.69904623789	0.511550209949	-0.476045639499	-0.919552316656	-0.558985672789	-1.92672239551	-0.900481292042	1.72739845444	-0.194415254706	0.878602467266	-0.450480745028	0.419689730297	1.00798882964	-0.222180037029	0.487909558516	294.736821547	13.5241877172	6.16563546967
63	2.27453519747	-0.0178127850957	-0.126493048924	2.80305068454	-0.721001957098	5.69508095105	1.1228639175	-0.41841852692	0.259509484526	-0.171803321331	0.0409359395215	0.330916429207	-0.512442469062	0.673166107449	-0.92843736129	0.752460442152	-0.0409886796804	0.111116004776	0.720803691332	-0.0471391160467	0.374066356852	287.13482756	13.505070192	-11.3520339857
64	9.00456889261	-0.530786956027	1.8627538468	8.48505826848	4.20913395729	9.76204161297	1.23381824779	0.313339698154	-0.631254653755	-1.53035117612	-0.547111791744	-1.51536948347	0.372227880222	0.418806125934	-0.933148273211	0.760774505251	0.245595069106	0.0232864689935	0.906706063761	-0.167397704931	0.459531651208	295.110588488	-0.302801329072	-23.6977189107

Refinement TLS group

ID	Refine-ID	Refine TLS-ID	Selection details
1	X-RAY DIFFRACTION	1	chain 'F' and (resid 1 through 9 )
2	X-RAY DIFFRACTION	2	chain 'F' and (resid 10 through 51 )
3	X-RAY DIFFRACTION	3	chain 'F' and (resid 52 through 88 )
4	X-RAY DIFFRACTION	4	chain 'B' and (resid 1 through 12 )
5	X-RAY DIFFRACTION	5	chain 'B' and (resid 13 through 33 )
6	X-RAY DIFFRACTION	6	chain 'B' and (resid 34 through 42 )
7	X-RAY DIFFRACTION	7	chain 'B' and (resid 43 through 57 )
8	X-RAY DIFFRACTION	8	chain 'B' and (resid 58 through 69 )
9	X-RAY DIFFRACTION	9	chain 'B' and (resid 70 through 76 )
10	X-RAY DIFFRACTION	10	chain 'B' and (resid 77 through 85 )
11	X-RAY DIFFRACTION	11	chain 'C' and (resid 1 through 5 )
12	X-RAY DIFFRACTION	12	chain 'C' and (resid 6 through 33 )
13	X-RAY DIFFRACTION	13	chain 'C' and (resid 34 through 42 )
14	X-RAY DIFFRACTION	14	chain 'C' and (resid 43 through 56 )
15	X-RAY DIFFRACTION	15	chain 'A' and (resid 1 through 12 )
16	X-RAY DIFFRACTION	16	chain 'A' and (resid 13 through 22 )
17	X-RAY DIFFRACTION	17	chain 'A' and (resid 23 through 42 )
18	X-RAY DIFFRACTION	18	chain 'A' and (resid 43 through 58 )
19	X-RAY DIFFRACTION	19	chain 'E' and (resid 0 through 37 )
20	X-RAY DIFFRACTION	20	chain 'E' and (resid 38 through 88 )
21	X-RAY DIFFRACTION	21	chain 'M' and (resid 1 through 22 )
22	X-RAY DIFFRACTION	22	chain 'M' and (resid 23 through 51 )
23	X-RAY DIFFRACTION	23	chain 'M' and (resid 52 through 88 )
24	X-RAY DIFFRACTION	24	chain 'L' and (resid 1 through 12 )
25	X-RAY DIFFRACTION	25	chain 'L' and (resid 13 through 42 )
26	X-RAY DIFFRACTION	26	chain 'L' and (resid 43 through 57 )
27	X-RAY DIFFRACTION	27	chain 'L' and (resid 58 through 69 )
28	X-RAY DIFFRACTION	28	chain 'L' and (resid 70 through 85 )
29	X-RAY DIFFRACTION	29	chain 'I' and (resid 1 through 37 )
30	X-RAY DIFFRACTION	30	chain 'I' and (resid 38 through 56 )
31	X-RAY DIFFRACTION	31	chain 'K' and (resid 1 through 23 )
32	X-RAY DIFFRACTION	32	chain 'K' and (resid 24 through 29 )
33	X-RAY DIFFRACTION	33	chain 'K' and (resid 30 through 42 )
34	X-RAY DIFFRACTION	34	chain 'K' and (resid 43 through 58 )
35	X-RAY DIFFRACTION	35	chain 'N' and (resid 1 through 37 )
36	X-RAY DIFFRACTION	36	chain 'N' and (resid 38 through 51 )
37	X-RAY DIFFRACTION	37	chain 'N' and (resid 52 through 56 )
38	X-RAY DIFFRACTION	38	chain 'N' and (resid 57 through 82 )
39	X-RAY DIFFRACTION	39	chain 'N' and (resid 83 through 88 )
40	X-RAY DIFFRACTION	40	chain 'D' and (resid 1 through 12 )
41	X-RAY DIFFRACTION	41	chain 'D' and (resid 13 through 29 )
42	X-RAY DIFFRACTION	42	chain 'D' and (resid 30 through 42 )
43	X-RAY DIFFRACTION	43	chain 'D' and (resid 43 through 57 )
44	X-RAY DIFFRACTION	44	chain 'D' and (resid 58 through 76 )
45	X-RAY DIFFRACTION	45	chain 'D' and (resid 77 through 84 )
46	X-RAY DIFFRACTION	46	chain 'J' and (resid 1 through 5 )
47	X-RAY DIFFRACTION	47	chain 'J' and (resid 6 through 22 )
48	X-RAY DIFFRACTION	48	chain 'J' and (resid 23 through 33 )
49	X-RAY DIFFRACTION	49	chain 'J' and (resid 34 through 42 )
50	X-RAY DIFFRACTION	50	chain 'J' and (resid 43 through 57 )
51	X-RAY DIFFRACTION	51	chain 'J' and (resid 58 through 68 )
52	X-RAY DIFFRACTION	52	chain 'J' and (resid 69 through 76 )
53	X-RAY DIFFRACTION	53	chain 'J' and (resid 77 through 85 )
54	X-RAY DIFFRACTION	54	chain 'G' and (resid 1 through 10 )
55	X-RAY DIFFRACTION	55	chain 'G' and (resid 11 through 26 )
56	X-RAY DIFFRACTION	56	chain 'H' and (resid 1 through 10 )
57	X-RAY DIFFRACTION	57	chain 'H' and (resid 11 through 25 )
58	X-RAY DIFFRACTION	58	chain 'P' and (resid 1 through 5 )
59	X-RAY DIFFRACTION	59	chain 'P' and (resid 6 through 10 )
60	X-RAY DIFFRACTION	60	chain 'P' and (resid 11 through 26 )
61	X-RAY DIFFRACTION	61	chain 'O' and (resid 1 through 10 )
62	X-RAY DIFFRACTION	62	chain 'O' and (resid 11 through 15 )
63	X-RAY DIFFRACTION	63	chain 'O' and (resid 16 through 20 )
64	X-RAY DIFFRACTION	64	chain 'O' and (resid 21 through 26 )

+
About Yorodumi

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

Version 3 of the EMDB header file is now the official format.
The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

+
Jan 31, 2019. EMDB accession codes are about to change! (news from PDBe EMDB page)

+
Jul 12, 2017. Major update of PDB

-
Yorodumi

Thousand views of thousand structures

Yorodumi is a browser for structure data from EMDB, PDB, SASBDB, etc.
This page is also the successor to EM Navigator detail page, and also detail information page/front-end page for Omokage search.
The word "yorodu" (or yorozu) is an old Japanese word meaning "ten thousand". "mi" (miru) is to see.

Related info.:EMDB / PDB / SASBDB / Comparison of 3 databanks / Yorodumi Search / Aug 31, 2016. New EM Navigator & Yorodumi / Yorodumi Papers / Jmol/JSmol / Function and homology information / Changes in new EM Navigator and Yorodumi

-
Movie

-
Structure viewers

+
Viewer log

-
This page

-
This web site

-
Options

+
Open data

-
Basic information

-
Structure visualization

-
Downloads & links

-
Download

-
Validation report

-
Related structure data

-
Links

-
Assembly

-
Components

-
Experimental details

-
Experiment

-
Sample preparation

-
Data collection

-
Processing

+
About Yorodumi

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

-
Aug 12, 2020. Covid-19 info

+
Mar 5, 2020. Novel coronavirus structure data

+
Jan 31, 2019. EMDB accession codes are about to change! (news from PDBe EMDB page)

+
Jul 12, 2017. Major update of PDB

-
Yorodumi

-Movie

-Structure viewers

+Viewer log

-This page

-This web site

-Options

+Open data

-Basic information

-Structure visualization

-Downloads & links

-Download

-Validation report

-Related structure data

-Links

-Assembly

-Components

-Experimental details

-Experiment

-Sample preparation

-Data collection

-Processing

+About Yorodumi

-News

-Feb 9, 2022. New format data for meta-information of EMDB entries

-Aug 12, 2020. Covid-19 info

+Mar 5, 2020. Novel coronavirus structure data

+Jan 31, 2019. EMDB accession codes are about to change! (news from PDBe EMDB page)

+Jul 12, 2017. Major update of PDB

-Yorodumi

-
Movie

-
Structure viewers

+
Viewer log

-
This page

-
This web site

-
Options

+
Open data

-
Basic information

-
Structure visualization

-
Downloads & links

-
Download

-
Validation report

-
Related structure data

-
Links

-
Assembly

-
Components

-
Experimental details

-
Experiment

-
Sample preparation

-
Data collection

-
Processing

+
About Yorodumi

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

-
Aug 12, 2020. Covid-19 info

+
Mar 5, 2020. Novel coronavirus structure data

+
Jan 31, 2019. EMDB accession codes are about to change! (news from PDBe EMDB page)

+
Jul 12, 2017. Major update of PDB

-
Yorodumi