[English] 日本語
Yorodumi
- PDB-7v5y: Crystal structure of hexameric complex of Sa2YoeB-Sa2YefM toxin-a... -

+
Open data


ID or keywords:

Loading...

-
Basic information

Entry
Database: PDB / ID: 7v5y
TitleCrystal structure of hexameric complex of Sa2YoeB-Sa2YefM toxin-antitoxin from Staphylococcus aureus
Components
  • Antitoxin
  • Putative mRNA interferase YoeB
KeywordsANTITOXIN / Toxin/antitoxin
Function / homology
Function and homology information


global gene silencing by mRNA cleavage / RNA catabolic process / endonuclease activity / negative regulation of DNA-templated transcription
Similarity search - Function
Toxin YoeB / YoeB-like toxin of bacterial type II toxin-antitoxin system / Type II toxin-antitoxin system, antitoxin Phd/YefM / Antitoxin Phd_YefM, type II toxin-antitoxin system / YefM-like superfamily / Toxin-antitoxin system, RelE/ParE toxin domain superfamily
Similarity search - Domain/homology
Antitoxin / Putative mRNA interferase YoeB
Similarity search - Component
Biological speciesStaphylococcus aureus (bacteria)
MethodX-RAY DIFFRACTION / SYNCHROTRON / MOLECULAR REPLACEMENT / Resolution: 2.25 Å
AuthorsXue, L. / Khan, M.H. / Yue, J.
Funding support China, 1items
OrganizationGrant numberCountry
National Natural Science Foundation of China (NSFC) China
CitationJournal: J.Biol.Chem. / Year: 2022
Title: The two paralogous copies of the YoeB-YefM toxin-antitoxin module in Staphylococcus aureus differ in DNA binding and recognition patterns.
Authors: Xue, L. / Khan, M.H. / Yue, J. / Zhu, Z. / Niu, L.
History
DepositionAug 18, 2021Deposition site: PDBJ / Processing site: PDBJ
Revision 1.0Dec 15, 2021Provider: repository / Type: Initial release
Revision 1.1Feb 16, 2022Group: Database references / Category: citation / Item: _citation.journal_volume / _citation.year
Revision 1.2Nov 29, 2023Group: Data collection / Refinement description
Category: chem_comp_atom / chem_comp_bond / pdbx_initial_refinement_model

-
Structure visualization

Structure viewerMolecule:
MolmilJmol/JSmol

Downloads & links

-
Assembly

Deposited unit
B: Antitoxin
D: Antitoxin
A: Antitoxin
C: Antitoxin
E: Putative mRNA interferase YoeB
F: Putative mRNA interferase YoeB


Theoretical massNumber of molelcules
Total (without water)60,4756
Polymers60,4756
Non-polymers00
Water2,288127
1


  • Idetical with deposited unit
  • defined by author&software
  • Evidence: light scattering
TypeNameSymmetry operationNumber
identity operation1_555x,y,z1
Buried area15200 Å2
ΔGint-68 kcal/mol
Surface area21230 Å2
MethodPISA
Unit cell
Length a, b, c (Å)51.989, 66.984, 82.361
Angle α, β, γ (deg.)90.000, 105.210, 90.000
Int Tables number4
Space group name H-MP1211
Space group name HallP2yb
Symmetry operation#1: x,y,z
#2: -x,y+1/2,-z

-
Components

#1: Protein
Antitoxin


Mass: 9783.692 Da / Num. of mol.: 4
Source method: isolated from a genetically manipulated source
Source: (gene. exp.) Staphylococcus aureus (strain NCTC 8325 / PS 47) (bacteria)
Strain: NCTC 8325 / PS 47 / Gene: SAOUHSC_02757 / Production host: Escherichia coli BL21(DE3) (bacteria) / References: UniProt: Q2FVF7
#2: Protein Putative mRNA interferase YoeB / Toxin YoeB


Mass: 10670.266 Da / Num. of mol.: 2
Source method: isolated from a genetically manipulated source
Source: (gene. exp.) Staphylococcus aureus (strain NCTC 8325 / PS 47) (bacteria)
Strain: NCTC 8325 / PS 47 / Gene: SAOUHSC_02756 / Production host: Escherichia coli BL21(DE3) (bacteria) / References: UniProt: Q2FVF8
#3: Water ChemComp-HOH / water


Mass: 18.015 Da / Num. of mol.: 127 / Source method: isolated from a natural source / Formula: H2O

-
Experimental details

-
Experiment

ExperimentMethod: X-RAY DIFFRACTION / Number of used crystals: 1

-
Sample preparation

CrystalDensity Matthews: 2.29 Å3/Da / Density % sol: 46.25 %
Crystal growTemperature: 289.15 K / Method: vapor diffusion, sitting drop / pH: 7
Details: 0.1 M Ammonium tartrate dibasic pH 7.0, 12% w/v Polyethylene glycol 3350

-
Data collection

DiffractionMean temperature: 100 K / Serial crystal experiment: N
Diffraction sourceSource: SYNCHROTRON / Site: SSRF / Beamline: BL18U1 / Wavelength: 0.97791 Å
DetectorType: DECTRIS PILATUS3 6M / Detector: PIXEL / Date: Mar 20, 2016
RadiationProtocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray
Radiation wavelengthWavelength: 0.97791 Å / Relative weight: 1
ReflectionResolution: 2.25→50 Å / Num. obs: 26095 / % possible obs: 99.9 % / Redundancy: 6.6 % / Biso Wilson estimate: 40.07 Å2 / CC1/2: 0.999 / Net I/σ(I): 26.7
Reflection shellResolution: 2.25→2.29 Å / Num. unique obs: 1296 / CC1/2: 0.845

-
Processing

Software
NameVersionClassification
PHENIX1.15.2_3472refinement
HKL-2000data reduction
HKL-2000data scaling
PHENIXphasing
RefinementMethod to determine structure: MOLECULAR REPLACEMENT
Starting model: 2A6Q
Resolution: 2.25→48.56 Å / SU ML: 0.2272 / Cross valid method: FREE R-VALUE / σ(F): 1.35 / Phase error: 23.8148
Stereochemistry target values: GeoStd + Monomer Library + CDL v1.2
RfactorNum. reflection% reflection
Rfree0.2286 1225 4.7 %
Rwork0.1804 24848 -
obs0.1827 26073 99.61 %
Solvent computationShrinkage radii: 0.9 Å / VDW probe radii: 1.11 Å / Solvent model: FLAT BULK SOLVENT MODEL
Displacement parametersBiso mean: 51.06 Å2
Refinement stepCycle: LAST / Resolution: 2.25→48.56 Å
ProteinNucleic acidLigandSolventTotal
Num. atoms3774 0 0 127 3901
Refine LS restraints
Refine-IDTypeDev idealNumber
X-RAY DIFFRACTIONf_bond_d0.00383842
X-RAY DIFFRACTIONf_angle_d0.55765196
X-RAY DIFFRACTIONf_chiral_restr0.0462576
X-RAY DIFFRACTIONf_plane_restr0.0029668
X-RAY DIFFRACTIONf_dihedral_angle_d4.70922348
LS refinement shell
Resolution (Å)Rfactor RfreeNum. reflection RfreeRfactor RworkNum. reflection RworkRefine-ID% reflection obs (%)
2.25-2.340.27541390.23342653X-RAY DIFFRACTION97.42
2.34-2.440.26871170.22682769X-RAY DIFFRACTION99.93
2.44-2.570.28721540.22542780X-RAY DIFFRACTION99.86
2.57-2.730.27191260.21752754X-RAY DIFFRACTION100
2.73-2.940.28421410.20432751X-RAY DIFFRACTION99.9
2.94-3.240.26391550.20012731X-RAY DIFFRACTION100
3.24-3.710.21251490.17842770X-RAY DIFFRACTION99.86
3.71-4.670.20011100.14872797X-RAY DIFFRACTION99.83
4.67-48.560.1851340.15992843X-RAY DIFFRACTION99.67
Refinement TLS params.

Method: refined / Refine-ID: X-RAY DIFFRACTION

IDL112)L122)L132)L222)L232)L332)S11 (Å °)S12 (Å °)S13 (Å °)S21 (Å °)S22 (Å °)S23 (Å °)S31 (Å °)S32 (Å °)S33 (Å °)T112)T122)T132)T222)T232)T332)Origin x (Å)Origin y (Å)Origin z (Å)
10.1753773146230.0846535549671-0.0433965670992-0.1070064454040.08365447454230.0440710308510.0499055218680.109677622364-0.5337897594540.2576911436780.0254186982072-0.1529968147440.6832052470860.482983727817-0.0001435646138360.4609509551830.03566868516-0.02797558306290.3230556386070.004678657475030.35387716503914.8463159141-23.403864341330.095428491
20.591937796228-0.4247594031570.9375146288592.10653014324-0.02989749214421.251451421810.07933694374860.0200717432854-0.140236315931-0.4172733374810.1510556236290.1077870912920.1649058717220.06390689792540.0007500486393790.322913546863-0.04794130012490.005561497098740.3008020897310.03344709432740.2192733562938.97675311434-14.08787744322.1415986345
31.25967529204-0.681902013731-1.192249627080.6541323243940.3394854570690.4171433280550.3174265969490.343564548039-0.23377837615-0.19784911432-0.2013047776560.321429861217-0.283164225328-0.658855562114-0.05665044528410.5396404167350.0307534949306-0.1892319167570.5169160813270.06433792309070.304058878163-10.91812271251.62892555310.405841158907
40.571267913899-0.2493036688130.8237293292720.6901816359680.08239149327570.56126000842-0.168748914851-0.2561146939980.6291994075530.3107590246030.229858847374-0.421474128134-0.2640216105820.3157737294430.00366048769020.474149133172-0.05275477151980.08980533118880.412671789325-0.01651930893530.4917709950719.097987861617.825493288126.667547388
50.667648736069-0.424066796728-0.6825122268230.4234428647730.03807901116710.6280057665610.24427732086-0.1148528977070.570080314847-0.297028893349-0.0663470184090.552650634799-0.05646669976880.6643788149530.06347361718110.409698148546-0.06737598800520.02682700813350.3504952898220.09777576540440.34639324469912.329082200518.264988768819.530022614
60.217160130301-0.139267766194-0.2803082121160.06389786606180.0245578581243-0.09396539138340.107844883178-0.0871755196525-0.08565610290920.2842397191130.08586902151360.0580948207267-0.1299883772190.0227050853215-4.56517307142E-50.302105641963-0.002741587921550.0472993878070.2736806090680.1116726637380.3972671391150.4314317193586.0749711653326.284472967
71.57686735720.2566228796450.9949777849580.7920350279221.045435980270.9519858418720.0350014667681-0.1773408437920.3692858265410.0693551193118-0.1523022776730.1041861622630.0320377610834-0.1376584619691.66436425033E-50.1629430101330.03368288334720.02622316172940.2871590222980.03240907343510.398478264938-19.76887039630.39194283406333.5255985695
80.04979007805130.0387991034989-0.007727138800580.205784885021-0.2273355997550.1264029376150.127968451736-0.2184872660670.3025679419760.233165924804-0.0431880457009-0.136322686695-0.2248919838290.3703448448460.001137557636730.320118629152-0.0188012838335-0.03323361934190.3472060973920.06039458365860.42798107112217.8491445923-7.470018938832.2628089672
90.1860085670250.1913682221230.03958510068450.3113402786380.05432952131460.157336150460.30749620576-0.5215927821760.586306913111-0.0775724587751-0.2354769860580.2401369393830.538117876269-0.24409484109-0.0004282755848420.301368826707-0.006029823377620.05275224221320.403905858927-0.004220880402170.3115068583388.26327906285-11.755900774936.2227799348
100.02133172685750.0188683461665-0.002214941745040.0469494854586-0.1405982282280.09773988779480.385537152877-0.309123164378-0.135743368874-0.399196063645-0.05371391728140.416342296075-0.0543722388684-0.0852601591252-0.0005097433284760.2669974173320.01850839356110.02436964298140.3418664137940.07589731643740.3736649030797.61300356504-6.4787297086528.1659632756
110.142571645286-0.1066422866620.1145685253560.545336395225-0.0178377176620.0927063789698-0.1271285878220.2380981894490.453316194069-0.360701104350.0604262052381-0.352866769670.201082049816-0.1992833221270.001528734184150.309131337259-0.01672374188770.07401399649670.407755748710.06006463511680.41612320106916.968780646-8.7739426734122.1046654486
120.0243553476072-0.09658761868130.1955306010140.2008973219750.1688505472420.02546986612280.126819712526-0.04237729396490.124869226113-0.171617541925-0.34627823849-0.04348878119850.405029441425-0.276628275170.00129516148690.3347832277-0.0784804698659-0.03380326742390.3716861778990.04538068328380.419135110917-3.20864856009-16.08106572920.5880807945
130.24958148728-0.224548087778-0.178167144870.8594771329520.01934465510950.5116334123850.1879728625290.154521066339-0.405550299561-0.5882591115330.0750274337112-0.185751396590.2680370199870.312523617428-0.0009452148096280.455203135282-0.03355190769160.03297975740610.393550576832-0.01684724494330.32047516534217.39542333377.4469771374216.8746800021
140.297529784994-0.196055895629-0.1329382831470.1481209886830.1645513591650.127349704657-0.09683767088420.00175422247718-0.8557443714430.5555576991430.6106284846820.610781606269-0.9088192693110.1986339266440.009977595921220.370163652202-0.030930335974-0.03227154678180.3273208171840.0940976407010.38474501462216.23364348857.2475949610628.4875169542
150.671662420506-0.2096760547970.0440065722243-0.05916336857140.0708435002220.649074077730.4052746132950.129376304491.18877394869-0.0890383976915-0.1665392090630.511911743090.009205132156080.01297274803830.01500363042710.34614243295-0.0285760624723-0.02069805290450.3514810646780.1647616414730.504404255762-1.2559461480216.180443902919.4159195238
16-0.00708923612138-0.0577255437943-0.03562875455130.395305567072-0.03948566421880.03509507548620.1066367411420.353626346979-0.185978253809-0.5641593842050.3501306808050.4165177419020.4528865374510.3719717806630.01611249700740.8401884956760.100206196687-0.08261531503420.776826750237-0.0500165531120.269471406173-0.920331110336-0.283715655589-7.32720796902
170.707023373349-0.0373992145511-0.3615745426450.008402386474090.01698099193430.2069454434960.639252757770.4618310179620.89832058754-0.254441395553-0.2665244835710.760968829649-0.576875147118-0.5126927166130.03540805478790.5705743694180.06653485969250.03141280508080.4230480927450.1067703447720.466362045047-9.7702245034510.45948214244.6348447089
180.1319473270270.009659640240020.3115901334910.3942306651240.05549006428630.3287206907440.0456728162940.1307655652950.237219640472-0.3780166877910.094710512413-0.443657014606-0.5178756308740.7032951401550.02131743547580.733619466414-0.06287457779340.06059424553810.3896436886920.07430743178050.339000797742.80057849498.00422198131-1.09305520258
190.593513057669-0.562596456217-0.3221080980150.3192243633540.1620681885720.6544094777770.175264088607-0.155208655344-0.2741690519470.0477882359627-0.106368265481-0.2274252231080.1253773659340.118358124268-4.70568206351E-50.5300105396760.00793191677285-0.03883221936190.36591308459-0.009311033398780.375175310614.3086634677-5.597359226425.24204050214
200.1396434017970.0485079120572-0.01683339167480.116706011481-0.03500798139720.02872824669420.585387438968-1.1918224803-0.04371166451851.184506367650.7118950403510.044201852861-0.5204559918760.791233486686-0.001293070594740.49476889369-0.0267374041913-0.03784208045240.506949441478-0.03558163005970.335870128706-0.57534556517.1891777822512.9489969625
210.4981627545860.0486203744268-0.1877904631460.354730449387-0.3190954520920.5878352066960.3599460331420.175474250266-0.180854327623-0.2796725474260.0545459607386-0.170159473086-0.0880823259168-0.08419296345090.00898141281970.586429450740.0125339133985-0.07698220763830.382464128246-0.06139162593620.256429749592-1.35431270925-4.45694436264-2.46358936188
220.00634540377479-0.06689447148440.02168095287430.0279183690847-0.08943828087130.01583221507420.247212986562-0.529965098849-0.249057495790.176222841448-0.08080273656121.368092312610.0271139988511-0.395398085985-0.003745689525240.604474053253-0.08749926965160.05449312028490.4881695940940.05115440728430.48828405494-10.51570367694.8132665896712.79317906
23-0.04832606269890.06711543310880.09160296067110.162597937257-0.1209750176550.038728470557-0.329313140382-0.0975440509-0.1428459564370.12007070150.01402464301240.419092102204-0.376214245649-0.005836416514340.0008043248793310.2984615910080.01321116691790.004260122153050.383821014638-0.08044871140540.278076177047-14.70792160981.5262976138245.2001092781
240.121639347507-0.00189921016637-0.1808174038590.0908575438935-0.132784031610.358997147146-0.1413587732850.07377593632490.0532772549954-0.1388168334270.09025344084790.3533964214070.16024606129-0.165599344814-1.23851249147E-50.261055241663-0.0042782860844-0.01173237989310.292369178275-0.01107292270570.415914357222-18.045512234-8.7348160612830.8633267278
250.255907611022-0.169081734478-0.1500909678410.2037055010250.114239058781-0.05413736314510.0689769766496-0.390516240794-0.1937476822450.195673429542-0.00571712984993-0.1265728678670.1588149203550.09614539882460.0002500926497010.242296360333-0.0181553428697-0.003761833743690.395627206270.0909763617420.366540209685-8.81095308664-6.605273627841.9760575913
260.289079361778-0.0538976641742-0.1110736808080.02323874313560.3301672447950.372865610687-0.0483911468118-0.008357523675440.4559222284360.013649436407-0.1414638236530.0741622064129-0.1458332876580.266804749338-0.0001259824908280.227126488836-0.0541857963545-0.03343349356710.301724123355-0.01532333675750.402630458656-1.593565024624.0002708548237.4019333213
270.521550371225-0.161555696031-0.1828096093030.04830258588630.07088863508320.0559753375767-0.238522871396-1.262262452821.08727207433-0.1675076898210.3236671001510.175279191975-0.836251222750.317007076015-0.01737537606920.3296108867540.0143396538130.07122383013280.272060048763-0.08257504541160.724285746564-6.9539807291913.94429456934.3759328178
280.649139781530.2189372658970.2173422283450.0303567714443-0.1285008555520.2280602246770.0563028476838-0.1028517605280.0878441117814-0.185453068386-0.1373108822950.0746829159177-0.003865149504310.0195404320585-0.0002785618089620.2259765640230.004065019263270.0362892107050.318580138862-0.00850116301820.354626009973-7.11244013039-0.31625776187633.4426556017
290.135065201213-0.07883030511270.07854100888520.159062022990.07086187305170.03076807976630.217155872216-0.2991622860770.184849522241-0.113462129093-0.22684871027-0.257947183683-0.0643137908162-0.605873003042-1.11373113911E-60.203758059033-0.01317729891910.03020987078640.350954158455-0.108409543440.382970949222-13.82567013266.6469531616443.6460342302
30-0.03589106250180.05717831029810.04067207484650.0625657984526-0.01036627285070.000416171857751-0.1277475663950.08218055779660.188703871665-0.1694947537350.01017437025210.2992965743550.5337288026470.319762824135-0.000155074798330.294581178463-0.0179112861643-0.006023370818380.3244391357380.04305886595460.266497235266-14.1142942413-4.4397830408722.8980134579
Refinement TLS group
IDRefine-IDRefine TLS-IDSelection details
1X-RAY DIFFRACTION1chain 'B' and (resid 1 through 12 )
2X-RAY DIFFRACTION2chain 'B' and (resid 13 through 57 )
3X-RAY DIFFRACTION3chain 'B' and (resid 58 through 85 )
4X-RAY DIFFRACTION4chain 'D' and (resid 1 through 23 )
5X-RAY DIFFRACTION5chain 'D' and (resid 24 through 42 )
6X-RAY DIFFRACTION6chain 'D' and (resid 43 through 57 )
7X-RAY DIFFRACTION7chain 'D' and (resid 58 through 85 )
8X-RAY DIFFRACTION8chain 'A' and (resid 1 through 12 )
9X-RAY DIFFRACTION9chain 'A' and (resid 13 through 23 )
10X-RAY DIFFRACTION10chain 'A' and (resid 24 through 29 )
11X-RAY DIFFRACTION11chain 'A' and (resid 30 through 42 )
12X-RAY DIFFRACTION12chain 'A' and (resid 43 through 56 )
13X-RAY DIFFRACTION13chain 'C' and (resid 1 through 29 )
14X-RAY DIFFRACTION14chain 'C' and (resid 30 through 42 )
15X-RAY DIFFRACTION15chain 'C' and (resid 43 through 56 )
16X-RAY DIFFRACTION16chain 'E' and (resid 2 through 9 )
17X-RAY DIFFRACTION17chain 'E' and (resid 10 through 24 )
18X-RAY DIFFRACTION18chain 'E' and (resid 25 through 37 )
19X-RAY DIFFRACTION19chain 'E' and (resid 38 through 60 )
20X-RAY DIFFRACTION20chain 'E' and (resid 61 through 65 )
21X-RAY DIFFRACTION21chain 'E' and (resid 66 through 82 )
22X-RAY DIFFRACTION22chain 'E' and (resid 83 through 88 )
23X-RAY DIFFRACTION23chain 'F' and (resid 2 through 9 )
24X-RAY DIFFRACTION24chain 'F' and (resid 10 through 24 )
25X-RAY DIFFRACTION25chain 'F' and (resid 25 through 38 )
26X-RAY DIFFRACTION26chain 'F' and (resid 39 through 51 )
27X-RAY DIFFRACTION27chain 'F' and (resid 52 through 56 )
28X-RAY DIFFRACTION28chain 'F' and (resid 57 through 72 )
29X-RAY DIFFRACTION29chain 'F' and (resid 73 through 82 )
30X-RAY DIFFRACTION30chain 'F' and (resid 83 through 88 )

+
About Yorodumi

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbjlvh1.pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jan 31, 2019. EMDB accession codes are about to change! (news from PDBe EMDB page)

EMDB accession codes are about to change! (news from PDBe EMDB page)

  • The allocation of 4 digits for EMDB accession codes will soon come to an end. Whilst these codes will remain in use, new EMDB accession codes will include an additional digit and will expand incrementally as the available range of codes is exhausted. The current 4-digit format prefixed with “EMD-” (i.e. EMD-XXXX) will advance to a 5-digit format (i.e. EMD-XXXXX), and so on. It is currently estimated that the 4-digit codes will be depleted around Spring 2019, at which point the 5-digit format will come into force.
  • The EM Navigator/Yorodumi systems omit the EMD- prefix.

Related info.:Q: What is EMD? / ID/Accession-code notation in Yorodumi/EM Navigator

External links:EMDB Accession Codes are Changing Soon! / Contact to PDBj

+
Jul 12, 2017. Major update of PDB

Major update of PDB

  • wwPDB released updated PDB data conforming to the new PDBx/mmCIF dictionary.
  • This is a major update changing the version number from 4 to 5, and with Remediation, in which all the entries are updated.
  • In this update, many items about electron microscopy experimental information are reorganized (e.g. em_software).
  • Now, EM Navigator and Yorodumi are based on the updated data.

External links:wwPDB Remediation / Enriched Model Files Conforming to OneDep Data Standards Now Available in the PDB FTP Archive

-
Yorodumi

Thousand views of thousand structures

  • Yorodumi is a browser for structure data from EMDB, PDB, SASBDB, etc.
  • This page is also the successor to EM Navigator detail page, and also detail information page/front-end page for Omokage search.
  • The word "yorodu" (or yorozu) is an old Japanese word meaning "ten thousand". "mi" (miru) is to see.

Related info.:EMDB / PDB / SASBDB / Comparison of 3 databanks / Yorodumi Search / Aug 31, 2016. New EM Navigator & Yorodumi / Yorodumi Papers / Jmol/JSmol / Function and homology information / Changes in new EM Navigator and Yorodumi

Read more