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Open data
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Basic information
| Entry | Database: PDB / ID: 6ulv | ||||||
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| Title | BRD4-BD1 in complex with the cyclic peptide 4.2_1 | ||||||
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Keywords | TRANSCRIPTION/INHIBITOR / BET / bromodomain / macrocyclic peptide / BRD4 / inhibitor / RaPID / TRANSCRIPTION-INHIBITOR complex / TRANSCRIPTION | ||||||
| Function / homology | Function and homology informationRNA polymerase II C-terminal domain binding / P-TEFb complex binding / negative regulation of DNA damage checkpoint / histone H4 reader activity / host-mediated suppression of viral transcription / positive regulation of G2/M transition of mitotic cell cycle / positive regulation of T-helper 17 cell lineage commitment / : / RNA polymerase II CTD heptapeptide repeat kinase activity / condensed nuclear chromosome ...RNA polymerase II C-terminal domain binding / P-TEFb complex binding / negative regulation of DNA damage checkpoint / histone H4 reader activity / host-mediated suppression of viral transcription / positive regulation of G2/M transition of mitotic cell cycle / positive regulation of T-helper 17 cell lineage commitment / : / RNA polymerase II CTD heptapeptide repeat kinase activity / condensed nuclear chromosome / transcription coregulator activity / positive regulation of transcription elongation by RNA polymerase II / p53 binding / chromosome / regulation of inflammatory response / histone binding / Potential therapeutics for SARS / transcription coactivator activity / positive regulation of canonical NF-kappaB signal transduction / transcription cis-regulatory region binding / chromatin remodeling / protein serine/threonine kinase activity / DNA damage response / chromatin binding / regulation of transcription by RNA polymerase II / chromatin / positive regulation of DNA-templated transcription / enzyme binding / positive regulation of transcription by RNA polymerase II / nucleoplasm / nucleus Similarity search - Function | ||||||
| Biological species | Homo sapiens (human)synthetic construct (others) | ||||||
| Method | X-RAY DIFFRACTION / SYNCHROTRON / MOLECULAR REPLACEMENT / Resolution: 2.2 Å | ||||||
Authors | Patel, K. / Walshe, J.L. / Walport, L.J. / Mackay, J.P. | ||||||
| Funding support | Australia, 1items
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Citation | Journal: Proc.Natl.Acad.Sci.USA / Year: 2020Title: Cyclic peptides can engage a single binding pocket through highly divergent modes. Authors: Patel, K. / Walport, L.J. / Walshe, J.L. / Solomon, P.D. / Low, J.K.K. / Tran, D.H. / Mouradian, K.S. / Silva, A.P.G. / Wilkinson-White, L. / Norman, A. / Franck, C. / Matthews, J.M. / Guss, ...Authors: Patel, K. / Walport, L.J. / Walshe, J.L. / Solomon, P.D. / Low, J.K.K. / Tran, D.H. / Mouradian, K.S. / Silva, A.P.G. / Wilkinson-White, L. / Norman, A. / Franck, C. / Matthews, J.M. / Guss, J.M. / Payne, R.J. / Passioura, T. / Suga, H. / Mackay, J.P. | ||||||
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Structure visualization
| Structure viewer | Molecule: Molmil Jmol/JSmol |
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Downloads & links
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Download
| PDBx/mmCIF format | 6ulv.cif.gz | 267.8 KB | Display | PDBx/mmCIF format |
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| PDB format | pdb6ulv.ent.gz | 179.7 KB | Display | PDB format |
| PDBx/mmJSON format | 6ulv.json.gz | Tree view | PDBx/mmJSON format | |
| Others | Other downloads |
-Validation report
| Summary document | 6ulv_validation.pdf.gz | 778.6 KB | Display | wwPDB validaton report |
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| Full document | 6ulv_full_validation.pdf.gz | 781 KB | Display | |
| Data in XML | 6ulv_validation.xml.gz | 21.5 KB | Display | |
| Data in CIF | 6ulv_validation.cif.gz | 30.1 KB | Display | |
| Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/ul/6ulv ftp://data.pdbj.org/pub/pdb/validation_reports/ul/6ulv | HTTPS FTP |
-Related structure data
| Related structure data | ![]() 6u4aC ![]() 6u61C ![]() 6u6kC ![]() 6u6lC ![]() 6u71C ![]() 6u72C ![]() 6u74C ![]() 6u8gC ![]() 6u8hC ![]() 6u8iC ![]() 6u8mC ![]() 6ulpC ![]() 6ulqC ![]() 6ultC ![]() 4lyiS S: Starting model for refinement C: citing same article ( |
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| Similar structure data |
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Assembly
| Deposited unit | ![]()
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| Noncrystallographic symmetry (NCS) | NCS domain:
NCS domain segments:
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About Yorodumi




Homo sapiens (human)
X-RAY DIFFRACTION
Australia, 1items
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