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- PDB-6nin: Rhodobacter sphaeroides bc1 with STIGMATELLIN A -

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基本情報

登録情報
データベース: PDB / ID: 6nin
タイトルRhodobacter sphaeroides bc1 with STIGMATELLIN A
要素
  • Cytochrome b
  • Cytochrome c1
  • Ubiquinol-cytochrome c reductase iron-sulfur subunit
キーワードOXIDOREDUCTASE/INHIBITOR / Mitochondrial respiratory chain complex / cytochrome bc1 / inhibitors / electron transfer / OXIDOREDUCTASE / OXIDOREDUCTASE-INHIBITOR complex
機能・相同性
機能・相同性情報


respiratory chain complex III / quinol-cytochrome-c reductase / ubiquinol-cytochrome-c reductase activity / respiratory electron transport chain / 2 iron, 2 sulfur cluster binding / electron transfer activity / heme binding / membrane / metal ion binding / plasma membrane
類似検索 - 分子機能
Ubiquitinol-cytochrome C reductase, Fe-S subunit, TAT signal / Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal / Cytochrome Bc1 Complex; Chain C / Cytochrome Bc1 Complex; Chain C / Cytochrome c1, transmembrane anchor, C-terminal / Cytochrome b / : / : / Ubiquinol-cytochrome c reductase, iron-sulphur subunit / Cytochrome c1 ...Ubiquitinol-cytochrome C reductase, Fe-S subunit, TAT signal / Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal / Cytochrome Bc1 Complex; Chain C / Cytochrome Bc1 Complex; Chain C / Cytochrome c1, transmembrane anchor, C-terminal / Cytochrome b / : / : / Ubiquinol-cytochrome c reductase, iron-sulphur subunit / Cytochrome c1 / Cytochrome C1 family / Cytochrome b/b6, C-terminal / Cytochrome b(C-terminal)/b6/petD / Cytochrome b/b6 C-terminal region profile. / Twin-arginine translocation pathway, signal sequence, bacterial/archaeal / Cytochrome b/b6, C-terminal domain superfamily / Cytochrome b/b6/petB / Rieske iron-sulphur protein, C-terminal / Cytochrome b/b6, N-terminal / Cytochrome b/b6-like domain superfamily / Cytochrome b/b6 N-terminal region profile. / Di-haem cytochrome, transmembrane / Rieske iron-sulphur protein / Cytochrome c-like domain / Cytochrome Bc1 Complex; Chain D, domain 2 / Rieske [2Fe-2S] iron-sulphur domain / Rieske [2Fe-2S] domain / Rieske [2Fe-2S] iron-sulfur domain profile. / Rieske [2Fe-2S] iron-sulphur domain superfamily / Cytochrome c family profile. / Cytochrome c-like domain / Cytochrome c-like domain superfamily / Twin arginine translocation (Tat) signal profile. / Twin-arginine translocation pathway, signal sequence / Single alpha-helices involved in coiled-coils or other helix-helix interfaces / Up-down Bundle / Orthogonal Bundle / Mainly Alpha
類似検索 - ドメイン・相同性
1,2-DIHEXANOYL-SN-GLYCERO-3-PHOSPHOETHANOLAMINE / FE2/S2 (INORGANIC) CLUSTER / HEME C / PROTOPORPHYRIN IX CONTAINING FE / STIGMATELLIN A / STRONTIUM ION / : / : / : / Ubiquinol-cytochrome c reductase iron-sulfur subunit ...1,2-DIHEXANOYL-SN-GLYCERO-3-PHOSPHOETHANOLAMINE / FE2/S2 (INORGANIC) CLUSTER / HEME C / PROTOPORPHYRIN IX CONTAINING FE / STIGMATELLIN A / STRONTIUM ION / : / : / : / Ubiquinol-cytochrome c reductase iron-sulfur subunit / Cytochrome b / Cytochrome c1
類似検索 - 構成要素
生物種Rhodobacter sphaeroides (バクテリア)
手法X線回折 / シンクロトロン / 分子置換 / 解像度: 3.6 Å
データ登録者Xia, D. / Zhou, F. / Esser, L.
引用ジャーナル: J.Biol.Chem. / 年: 2019
タイトル: Crystal structure of bacterial cytochromebc1in complex with azoxystrobin reveals a conformational switch of the Rieske iron-sulfur protein subunit.
著者: Esser, L. / Zhou, F. / Yu, C.A. / Xia, D.
履歴
登録2018年12月31日登録サイト: RCSB / 処理サイト: RCSB
改定 1.02019年6月19日Provider: repository / タイプ: Initial release
改定 1.12019年6月26日Group: Data collection / Database references / カテゴリ: citation / citation_author
Item: _citation.pdbx_database_id_DOI / _citation.pdbx_database_id_PubMed ..._citation.pdbx_database_id_DOI / _citation.pdbx_database_id_PubMed / _citation.title / _citation_author.identifier_ORCID / _citation_author.name
改定 1.22019年8月21日Group: Data collection / Database references / カテゴリ: citation
Item: _citation.journal_volume / _citation.page_first ..._citation.journal_volume / _citation.page_first / _citation.page_last / _citation.title
改定 1.32020年7月29日Group: Data collection / Derived calculations / Structure summary
カテゴリ: chem_comp / entity ...chem_comp / entity / pdbx_chem_comp_identifier / pdbx_entity_nonpoly / struct_conn / struct_conn_type / struct_site / struct_site_gen
Item: _chem_comp.mon_nstd_flag / _chem_comp.name ..._chem_comp.mon_nstd_flag / _chem_comp.name / _chem_comp.type / _entity.pdbx_description / _pdbx_entity_nonpoly.name / _struct_conn.conn_type_id / _struct_conn.id / _struct_conn.pdbx_dist_value / _struct_conn.pdbx_leaving_atom_flag / _struct_conn.ptnr1_auth_asym_id / _struct_conn.ptnr1_auth_comp_id / _struct_conn.ptnr1_auth_seq_id / _struct_conn.ptnr1_label_asym_id / _struct_conn.ptnr1_label_atom_id / _struct_conn.ptnr1_label_comp_id / _struct_conn.ptnr1_label_seq_id / _struct_conn.ptnr2_auth_asym_id / _struct_conn.ptnr2_auth_comp_id / _struct_conn.ptnr2_auth_seq_id / _struct_conn.ptnr2_label_asym_id / _struct_conn.ptnr2_label_atom_id / _struct_conn.ptnr2_label_comp_id / _struct_conn_type.id
解説: Carbohydrate remediation / Provider: repository / タイプ: Remediation
改定 1.42023年10月11日Group: Data collection / Database references ...Data collection / Database references / Refinement description / Structure summary
カテゴリ: chem_comp / chem_comp_atom ...chem_comp / chem_comp_atom / chem_comp_bond / database_2 / pdbx_initial_refinement_model
Item: _chem_comp.pdbx_synonyms / _database_2.pdbx_DOI / _database_2.pdbx_database_accession

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構造の表示

構造ビューア分子:
MolmilJmol/JSmol

ダウンロードとリンク

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集合体

登録構造単位
A: Cytochrome b
B: Cytochrome c1
C: Ubiquinol-cytochrome c reductase iron-sulfur subunit
E: Cytochrome b
F: Cytochrome c1
G: Ubiquinol-cytochrome c reductase iron-sulfur subunit
K: Cytochrome b
L: Cytochrome c1
M: Ubiquinol-cytochrome c reductase iron-sulfur subunit
O: Cytochrome b
P: Cytochrome c1
Q: Ubiquinol-cytochrome c reductase iron-sulfur subunit
S: Cytochrome b
T: Cytochrome c1
U: Ubiquinol-cytochrome c reductase iron-sulfur subunit
W: Cytochrome b
X: Cytochrome c1
Y: Ubiquinol-cytochrome c reductase iron-sulfur subunit
ヘテロ分子


分子量 (理論値)分子数
合計 (水以外)616,42963
ポリマ－597,66618
非ポリマー18,76345
水00
1
A: Cytochrome b
B: Cytochrome c1
C: Ubiquinol-cytochrome c reductase iron-sulfur subunit
E: Cytochrome b
F: Cytochrome c1
G: Ubiquinol-cytochrome c reductase iron-sulfur subunit
ヘテロ分子


分子量 (理論値)分子数
合計 (水以外)205,88722
ポリマ－199,2226
非ポリマー6,66516
水0
タイプ名称対称操作数
identity operation1_555x,y,z1
Buried area33320 Å2
ΔGint-419 kcal/mol
Surface area70960 Å2
手法PISA
2
K: Cytochrome b
L: Cytochrome c1
M: Ubiquinol-cytochrome c reductase iron-sulfur subunit
O: Cytochrome b
P: Cytochrome c1
Q: Ubiquinol-cytochrome c reductase iron-sulfur subunit
ヘテロ分子


分子量 (理論値)分子数
合計 (水以外)205,06620
ポリマ－199,2226
非ポリマー5,84414
水0
タイプ名称対称操作数
identity operation1_555x,y,z1
Buried area31700 Å2
ΔGint-422 kcal/mol
Surface area71320 Å2
手法PISA
3
S: Cytochrome b
T: Cytochrome c1
U: Ubiquinol-cytochrome c reductase iron-sulfur subunit
W: Cytochrome b
X: Cytochrome c1
Y: Ubiquinol-cytochrome c reductase iron-sulfur subunit
ヘテロ分子


分子量 (理論値)分子数
合計 (水以外)205,47621
ポリマ－199,2226
非ポリマー6,25415
水0
タイプ名称対称操作数
identity operation1_555x,y,z1
Buried area32730 Å2
ΔGint-429 kcal/mol
Surface area71140 Å2
手法PISA
単位格子
Length a, b, c (Å)356.661, 145.752, 162.223
Angle α, β, γ (deg.)90.000, 104.970, 90.000
Int Tables number5
Space group name H-MC121
非結晶学的対称性 (NCS)NCSドメイン:
IDEns-ID詳細
11(chain A and (resid 3 through 1002 or resid 1101))
21(chain E and resid 3 through 1101)
31chain K
41chain O
51chain S
61(chain W and (resid 3 through 1002 or resid 1101))
12(chain B and resid 1 through 1001)
22(chain F and resid 1 through 1001)
32(chain L and resid 1 through 1001)
42(chain P and resid 1 through 1001)
52(chain T and resid 1 through 1001)
62(chain X and resid 1 through 1001)
13chain C
23chain G
33chain M
43chain Q
53chain U
63chain Y

NCSドメイン領域:
Dom-IDComponent-IDEns-IDSelection detailsAuth asym-IDAuth seq-ID
111(chain A and (resid 3 through 1002 or resid 1101))A3 - 1002
121(chain A and (resid 3 through 1002 or resid 1101))A1101
211(chain E and resid 3 through 1101)E3 - 1101
311chain KK3 - 1002
411chain OO3 - 1002
511chain SS3 - 1002
611(chain W and (resid 3 through 1002 or resid 1101))W3 - 1002
621(chain W and (resid 3 through 1002 or resid 1101))W1101
112(chain B and resid 1 through 1001)B1 - 1001
212(chain F and resid 1 through 1001)F1 - 1001
312(chain L and resid 1 through 1001)L1 - 1001
412(chain P and resid 1 through 1001)P1 - 1001
512(chain T and resid 1 through 1001)T1 - 1001
612(chain X and resid 1 through 1001)X1 - 1001
113chain CC9 - 1001
213chain GG9 - 1001
313chain MM9 - 1001
413chain QQ9 - 1001
513chain UU9 - 1001
613chain YY9 - 1001

NCSアンサンブル:
ID
1
2
3

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要素

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タンパク質 , 3種, 18分子 AEKOSWBFLPTXCGMQUY

#1: タンパク質
Cytochrome b


分子量: 50119.488 Da / 分子数: 6 / 由来タイプ: 天然 / 詳細: Mutation at Ala185 to Cys
由来: (天然) Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) (バクテリア)
株: ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158 / 参照: UniProt: A0A344Q9J3, UniProt: Q3IY10*PLUS
#2: タンパク質
Cytochrome c1


分子量: 29589.158 Da / 分子数: 6 / 由来タイプ: 天然
由来: (天然) Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) (バクテリア)
株: ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158 / 参照: UniProt: A0A344Q9J2, UniProt: Q3IY11*PLUS
#3: タンパク質
Ubiquinol-cytochrome c reductase iron-sulfur subunit


分子量: 19902.338 Da / 分子数: 6 / Mutation: K70C / 由来タイプ: 天然
由来: (天然) Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) (バクテリア)
株: ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158
参照: UniProt: A0A344Q9J4, UniProt: Q3IY09*PLUS, quinol-cytochrome-c reductase

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糖 , 1種, 6分子

#9: 糖
ChemComp-BOG / octyl beta-D-glucopyranoside / Beta-Octylglucoside / octyl beta-D-glucoside / octyl D-glucoside / octyl glucoside / オクチルβ-D-グルコピラノシド


タイプ: D-saccharide / 分子量: 292.369 Da / 分子数: 6 / 由来タイプ: 組換発現 / 式: C14H28O6 / コメント: 可溶化剤*YM
識別子タイププログラム
b-octylglucosideIUPAC CARBOHYDRATE SYMBOLPDB-CARE 1.0

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非ポリマー , 6種, 39分子

#4: 化合物
ChemComp-HEM / PROTOPORPHYRIN IX CONTAINING FE / HEME


分子量: 616.487 Da / 分子数: 12 / 由来タイプ: 合成 / 式: C34H32FeN4O4
#5: 化合物
ChemComp-SMA / STIGMATELLIN A


分子量: 514.650 Da / 分子数: 6 / 由来タイプ: 合成 / 式: C30H42O7
#6: 化合物 ChemComp-6PE / 1,2-DIHEXANOYL-SN-GLYCERO-3-PHOSPHOETHANOLAMINE / [O-(1-O,2-O-ジヘキサノイル-L-グリセロ-3-ホスホ)-2-アミノエタノ-ル]アニオン


分子量: 410.420 Da / 分子数: 3 / 由来タイプ: 合成 / 式: C17H33NO8P
#7: 化合物
ChemComp-HEC / HEME C


分子量: 618.503 Da / 分子数: 6 / 由来タイプ: 合成 / 式: C34H34FeN4O4
#8: 化合物
ChemComp-SR / STRONTIUM ION / ストロンチウムジカチオン


分子量: 87.620 Da / 分子数: 6 / 由来タイプ: 合成 / 式: Sr
#10: 化合物
ChemComp-FES / FE2/S2 (INORGANIC) CLUSTER


分子量: 175.820 Da / 分子数: 6 / 由来タイプ: 合成 / 式: Fe2S2

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実験情報

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実験

実験手法: X線回折 / 使用した結晶の数: 1

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試料調製

結晶マシュー密度: 3.41 Å3/Da / 溶媒含有率: 63.91 %
結晶化温度: 289 K / 手法: 蒸気拡散法, シッティングドロップ法 / pH: 7.5
詳細: 50 mM Tris pH 7.5, 200 mM NaCl, 200 mM histidine, 0.5% beta-octyl glucoside, 10% glycerol, 5 mM NaN3 and 1.25 mM sodium ascorbate, 5-8% PEG400 0.12-0.30% SMC
Temp details: constant

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データ収集

回折平均測定温度: 100 K / Serial crystal experiment: N
放射光源由来: シンクロトロン / サイト: APS / ビームライン: 22-ID / 波長: 0.827 Å
検出器タイプ: MARMOSAIC 300 mm CCD / 検出器: CCD / 日付: 2009年6月7日
放射モノクロメーター: Si111 / プロトコル: SINGLE WAVELENGTH / 単色(M)・ラウエ(L): M / 散乱光タイプ: x-ray
放射波長波長: 0.827 Å / 相対比: 1
反射解像度: 3.5→50 Å / Num. obs: 99255 / % possible obs: 96.5 % / 冗長度: 2.7 % / Rmerge(I) obs: 0.122 / Rpim(I) all: 0.087 / Rrim(I) all: 0.151 / Χ2: 0.999 / Net I/σ(I): 5.7 / Num. measured all: 267497
反射 シェル

Diffraction-ID: 1

解像度 (Å)冗長度 (%)Rmerge(I) obsNum. unique obsCC1/2Rpim(I) allRrim(I) allΧ2% possible all
3.5-3.582.30.84462500.3430.6531.0720.6891.7
3.58-3.672.40.79964310.3610.6151.0140.75294.7
3.67-3.772.40.66464660.4890.5060.8390.74894.8
3.77-3.882.50.53865030.6340.4070.6780.79594.9
3.88-4.012.50.44864870.7410.3350.5620.82495.3
4.01-4.152.60.36765670.7980.2710.4590.87396.1
4.15-4.322.60.27965990.8940.2030.3470.94696.3
4.32-4.512.70.22665830.9310.1630.280.98596.5
4.51-4.752.70.18166310.9480.1290.2231.13697.2
4.75-5.052.70.16567030.9560.1170.2041.08297.5
5.05-5.442.80.1567120.9650.1050.1831.16698
5.44-5.982.90.13167530.9740.0910.161.23498.5
5.98-6.8530.10368150.9840.070.1251.08998.8
6.85-8.623.10.06168570.9950.040.0731.12399.2
8.62-503.20.04568980.9970.0290.0531.14298.2

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解析

ソフトウェア
名称バージョン分類
DENZOデータ削減
SCALEPACKデータスケーリング
PHENIXdev_3339精密化
PDB_EXTRACT3.24データ抽出
MOLREP位相決定
精密化構造決定の手法: 分子置換
開始モデル: 2QJY

2qjy


解像度: 3.6→28.908 Å / SU ML: 0.43 / 交差検証法: THROUGHOUT / σ(F): 1.03 / 位相誤差: 29.19
Rfactor反射数%反射
Rfree0.2802 1087 1.2 %
Rwork0.2493 --
obs0.2496 90336 97.23 %
溶媒の処理減衰半径: 0.9 Å / VDWプローブ半径: 1.11 Å
原子変位パラメータBiso max: 316.7 Å2 / Biso mean: 147.3774 Å2 / Biso min: 58.07 Å2
精密化ステップサイクル: final / 解像度: 3.6→28.908 Å
タンパク質核酸リガンド溶媒全体
原子数40362 0 2298 0 42660
Biso mean--129.02 --
残基数----5178
Refine LS restraints NCS
Ens-IDDom-IDAuth asym-ID数Refine-IDRmsタイプ
11A10323X-RAY DIFFRACTION3.635TORSIONAL
12E10323X-RAY DIFFRACTION3.635TORSIONAL
13K10323X-RAY DIFFRACTION3.635TORSIONAL
14O10323X-RAY DIFFRACTION3.635TORSIONAL
15S10323X-RAY DIFFRACTION3.635TORSIONAL
16W10323X-RAY DIFFRACTION3.635TORSIONAL
21B7359X-RAY DIFFRACTION3.635TORSIONAL
22F7359X-RAY DIFFRACTION3.635TORSIONAL
23L7359X-RAY DIFFRACTION3.635TORSIONAL
24P7359X-RAY DIFFRACTION3.635TORSIONAL
25T7359X-RAY DIFFRACTION3.635TORSIONAL
26X7359X-RAY DIFFRACTION3.635TORSIONAL
31C4998X-RAY DIFFRACTION3.635TORSIONAL
32G4998X-RAY DIFFRACTION3.635TORSIONAL
33M4998X-RAY DIFFRACTION3.635TORSIONAL
34Q4998X-RAY DIFFRACTION3.635TORSIONAL
35U4998X-RAY DIFFRACTION3.635TORSIONAL
36Y4998X-RAY DIFFRACTION3.635TORSIONAL
LS精密化 シェル

Refine-ID: X-RAY DIFFRACTION / Rfactor Rfree error: 0 / Total num. of bins used: 8

解像度 (Å)Rfactor RfreeNum. reflection RfreeRfactor RworkNum. reflection RworkNum. reflection all% reflection obs (%)
3.6-3.76350.35491330.3296108921102595
3.7635-3.96150.29231340.2884109481108296
3.9615-4.2090.30681340.2615109781111297
4.209-4.53280.25591350.2336111201125597
4.5328-4.98690.26011360.2245111781131498
4.9869-5.70370.26731370.2369112781141598
5.7037-7.16790.27431400.258113971153799
7.1679-28.90930.27731380.2345114581159698
精密化 TLS

手法: refined / Refine-ID: X-RAY DIFFRACTION

IDL11 (°2)L12 (°2)L13 (°2)L22 (°2)L23 (°2)L33 (°2)S11 (Å °)S12 (Å °)S13 (Å °)S21 (Å °)S22 (Å °)S23 (Å °)S31 (Å °)S32 (Å °)S33 (Å °)T11 (Å2)T12 (Å2)T13 (Å2)T22 (Å2)T23 (Å2)T33 (Å2)Origin x (Å)Origin y (Å)Origin z (Å)
10.5529-0.1882-0.33680.1750.0680.20120.0309-0.11541.5562-1.07971.06020.219-0.7371-0.3491-0.00021.7694-0.40550.08791.57790.1832.058651.63195.6904120.9362
24.83772.32353.08451.24491.99294.8641-0.89530.91541.5789-0.3141-0.39370.8473-1.688-0.1032-2.98780.7139-0.38860.36290.9729-0.04480.42175.27498.5113127.5074
32.0911.22491.00930.87570.95482.0749-0.16030.35120.012-0.50970.4017-0.65410.13060.4507-0.00010.9772-0.24420.15890.9796-0.11820.928785.725389.6261133.7828
42.64010.8048-1.09862.00871.46662.69330.0616-0.04020.81910.2231-0.1036-0.0446-0.15380.1087-0.01010.8988-0.34520.19480.8344-0.24120.902479.684191.179146.0129
53.3377-0.074-0.68052.6722-0.28270.3349-0.20.49330.9723-0.69820.63791.1093-0.8813-0.35710.07941.2163-0.3703-0.00121.13320.03191.164170.8621107.5479122.712
61.1850.04490.29780.37180.45280.4961-0.63330.0360.4187-0.12520.1278-0.1624-0.2158-0.51980.0051.3226-0.2978-0.07110.9905-0.26381.117794.917497.5928151.2551
75.71052.8548-0.98371.45070.20157.1744-0.31510.96661.9304-0.44950.4080.9452-1.3927-1.24640.18430.6974-0.33830.07320.3949-0.35560.947482.44112.768145.4494
80.14990.17530.37520.68540.19440.8364-0.15060.0981.1137-0.115-0.22550.1233-0.39510.1771-0.00831.1891-0.1794-0.06871.0929-0.23911.46683.8509117.7111143.1808
90.24790.0587-0.2060.8342-1.02441.2903-0.27140.9950.40170.06990.0447-0.2116-0.99660.4531-0.00821.5151-0.44740.00511.5688-0.28381.6005110.696278.5254126.3387
101.7672-0.2495-0.66420.30520.5821.3972-0.076-0.27260.1281-1.27430.24370.86120.31870.1215-01.7983-0.3265-0.33371.4809-0.14031.6932107.553875.8292132.8613
110.5103-0.14210.40140.2586-0.18790.3925-0.0187-0.5780.1895-0.0704-0.6147-0.6279-0.66550.445901.4191-0.2756-0.16591.7405-0.23592.073123.579590.2523146.6814
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140.01930.03420.0650.06540.12350.3938-0.10420.16130.65910.50680.43030.0609-0.52610.33140.00010.9814-0.30590.22361.4194-0.17152.044792.912358.2314124.1873
151.31180.0734-0.47131.2531-0.5681.49510.0433-0.4141-0.41410.24790.1037-1.07540.06881.2593-0.01621.2947-0.2635-0.13351.1781-0.20261.165381.085840.6243120.8437
160.10730.0089-0.06180.0979-0.05180.05520.7454-0.79330.72530.0197-0.47471.60220.5369-1.412901.6607-0.22560.07851.59710.02092.321750.2027102.106144.1475
171.68011.20651.11453.81161.20811.68440.073-0.15660.0361-0.02810.06710.30730.0382-0.3702-00.9617-0.21860.03220.8994-0.02670.650563.555770.8648137.7967
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201.7840.5676-1.35391.4396-0.2512.65840.17330.3830.8720.41210.33991.0044-0.0748-1.13780.24360.8522-0.52250.06950.8814-0.18330.930746.152462.8383127.3805
211.1150.2166-0.24890.1118-0.16131.3213-0.2124-0.06450.2375-0.0506-0.01451.09850.0667-0.8795-0.01051.1343-0.287-0.06071.2149-0.01191.37641.119761.0361128.6237
221.2569-1.6004-0.35912.00640.61051.9937-0.0091-0.23450.51990.34390.12880.07280.5748-0.12860.00012.1246-0.3378-0.36421.3988-0.00521.53781.23351.2541162.5805
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241.4411.1641-0.18912.6117-2.27914.63420.4874-0.59150.31540.11370.27360.2866-0.4458-1.162610.87151.5582-0.50430.25751.7675-0.73431.081756.00982.9557162.8305
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286.38091.55062.35321.58551.74042.0877-0.60571.24721.6576-1.32850.50351.8835-1.2752-0.85640.37420.4723-0.3104-0.45981.88320.28521.541920.783919.132971.9066
293.31381.74030.06922.2242-0.44164.7745-0.33010.43570.41810.16430.36910.1537-0.1124-0.0728-0.00540.5862-0.40690.03420.7479-0.03170.618140.724515.81590.5115
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310.9992-1.2961-0.59524.6527-0.34670.6216-0.35691.4307-0.3145-0.60950.23852.1361-0.4793-1.91820.11131.4022-0.1514-0.44392.60120.20931.419227.191729.938569.7438
321.36670.06920.41251.01050.07160.1188-0.4930.14150.2422-0.09030.2541-0.0354-0.2004-0.072400.9425-0.18010.03930.9171-0.15571.014450.769123.758799.6076
332.58793.3585-0.31065.8130.32763.07820.10160.81851.4714-1.48160.37310.7626-0.6664-1.23550.1040.8720.12980.45881.1282-0.11661.058433.080736.039695.161
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350.77480.0990.48521.2485-0.97881.0894-0.2163-0.11220.27830.22340.5519-1.0327-0.70190.4256-0.00011.2805-0.42070.17461.7834-0.33521.570570.18519.227973.5748
360.2707-0.35850.21160.5423-0.20650.18830.18121.2222-0.054-1.2642-0.45040.30950.4031-0.0301-0.00011.1527-0.00930.10551.3788-0.38361.203966.9498-1.567580.0817
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381.42591.1074-1.06641.87730.06981.7016-0.9224-0.21470.62720.32770.1241-0.5428-0.34540.3451-0.00481.0983-0.23140.04861.15430.01281.398676.711418.216991.937
390.15570.27660.27620.78260.61840.55440.74620.7782-0.0319-0.0746-0.4812-0.70780.81970.14480.1041.4382-0.35370.53791.6482-0.17861.012658.0913.11167.9784
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410.86870.7881.73920.7161.57853.48460.6514-0.264-0.21490.2726-0.59510.38782.0606-0.90690.15121.34050.11370.02751.7262-0.68521.693755.1929-36.897582.7466
420.3050.065-0.29190.076-0.04920.254-1.04191.80910.0077-0.3081.26810.61920.49021.28850.00052.0824-0.2535-0.07252.0822-0.45891.844745.2837-38.587778.0301
430.11750.03620.17430.0724-0.13810.75550.49030.6677-0.81670.6474-0.74-0.70421.54272.2082-0.02071.4628-0.2618-0.07562.1152-0.21011.932142.9545-39.553364.7498
440.41780.5131-0.7620.9395-0.89271.2846-0.05920.1916-0.66180.1078-0.4149-0.16690.51020.3571-0.01011.8944-0.2486-0.12291.5636-0.50221.765240.1306-34.107775.1853
451.60921.29920.16533.5805-0.18691.5314-0.1030.8598-0.278-0.41540.36731.6640.2387-0.91210.0510.8508-0.3096-0.11421.35110.06091.068219.9558-2.073487.5123
461.33260.6094-0.72341.24490.55071.2304-0.090.6617-0.1438-0.33920.22440.31490.391-0.51340.00261.2011-0.4148-0.28131.5543-0.2041.8298.5595-14.775181.745
470.16620.0051-0.3471-0.03580.03550.6097-0.41070.45060.5889-0.16990.41181.24551.10120.0661-02.4144-0.10070.49161.6467-0.1042.529530.5568-27.5584115.3595
481.48590.0869-1.37920.5524-0.54211.68070.27570.0209-0.45350.2482-0.2208-0.33510.0883-0.1309-0.00011.8832-0.3068-0.1211.1566-0.12191.92143.6113-21.2227109.0085
490.35010.00460.40531.3890.54190.64080.4695-0.2694-0.49380.2498-0.2708-0.52161.0493-0.0552-02.0908-0.1494-0.14131.3182-0.01022.414533.863-41.5679104.3696
500.26180.0984-0.18560.054-0.09280.1380.4324-0.5631-0.8511.17760.17030.56431.3463-1.13730.00011.8364-0.52210.08691.4260.12181.643533.7706-26.3765113.9257
510.88861.0783-0.06651.53930.42550.88660.9177-0.4901-0.0882-0.03140.5134-0.06630.7921-0.95860.06881.3945-0.25830.21641.93310.24462.0077.16-3.0617109.4343
520.05510.0617-0.03321.8817-1.95722.0497-0.85140.0580.82280.46480.70540.73660.0622-1.28110.06851.1786-0.4440.26371.6477-0.40611.175612.73327.0977110.8338
530.2960.01970.14420.2151-0.29721.38020.4352-0.5658-1.73850.87910.34230.61520.8976-0.77150.00581.485-0.1451-0.00150.85260.00411.661859.38822.777113.2372
541.0368-0.0028-0.36420.8334-0.09290.7806-0.2597-0.5834-0.60820.8783-0.1225-0.63540.17190.5957-0.0060.9955-0.1139-0.08550.9881-0.10151.008661.475816.5905118.2229
550.1217-0.0983-0.11270.22450.03780.07850.1865-0.7441.3249-1.03570.8138-0.3503-1.0062-0.1392-0.00041.6595-0.16490.27811.57320.15983.0785-36.4646-50.601720.5532
568.15062.13141.51113.22244.33826.1759-0.36720.93232.3889-0.7625-0.59420.6462-2.06770.0785-4.39430.0839-0.59790.48741.2444-0.34361.1581-12.105-49.461825.6269
572.5952.0071-0.17562.2136-1.17074.62060.16330.13230.96750.43180.6660.6801-1.18130.17440.03381.2994-0.47070.4671.1471-0.2451.7299-4.7568-55.633334.0986
580.0765-0.05990.10480.0425-0.09690.2848-0.1671-1.30961.2050.9668-0.46430.0385-0.69380.7866-0.04811.5961-0.4513-0.35541.7042-0.48281.97281.8286-64.449651.9672
592.7505-0.2974-1.21451.40571.21671.97360.9187-0.16651.60360.394-0.3596-0.3255-0.75720.33190.09080.9313-0.35160.51640.9854-0.41131.3771-12.3153-59.680637.6301
601.0097-0.31920.43240.287-0.83532.4962-0.2438-0.70391.39780.54520.31990.9245-1.4964-0.50110.12231.9533-0.60180.28831.4586-0.4792.3162-16.3118-39.855321.5958
610.15050.2660.70270.78481.45273.01240.7107-0.62320.53360.63750.2859-0.24390.12171.337-0.8191.8374-1.01270.06132.1729-0.81652.398.897-52.749748.078
620.38870.107-0.54040.1119-0.37121.75380.6065-0.68710.27090.21040.12-0.361-0.63580.2342.47332.0679-0.852-0.07391.4984-0.61052.2444-3.1045-36.667543.986
630.31660.1821-0.24220.9898-1.08851.24150.2135-0.33170.6193-0.65680.1518-0.7167-1.34960.6180.11352.6415-0.3339-0.19391.2944-0.65592.1646-1.5106-31.553841.7527
640.0096-0.0570.05340.0874-0.06010.1685-0.42680.5302-0.4094-0.1960.88410.6138-1.03231.31010.00251.4796-0.55710.22712.6153-0.35982.45223.9207-65.598918.4234
650.5611-0.476-1.2090.31390.83812.1343-0.0471-0.063-0.0102-0.3968-0.002-1.099-0.00761.0539-01.2989-0.0999-0.06362.2587-0.43222.270918.3908-78.415126.6027
661.9831-0.9517-1.01761.1362-0.0720.9985-0.93620.7510.1682-0.73311.3335-1.2693-0.47050.55480.27751.2877-0.8465-0.47653.17130.263.322823.229-57.262626.0006
671.5137-0.5648-1.34960.2130.50081.18810.80210.18870.51290.8062-1.0782-0.10620.7714-2.23960.02011.9361-1.0485-0.20523.7769-0.41482.957941.0304-63.198139.4112
681.61321.3292-1.29323.1740.3343.27910.6722-0.9433-0.20840.31810.1623-0.70750.49980.83060.06211.3681-0.79950.63891.8927-0.36421.688718.4099-59.555922.6587
690.96730.8495-0.5471.2178-0.32871.04920.71680.56480.318-1.0916-0.9236-1.184-0.17210.6944-0.01141.3478-0.26590.0031.7603-0.36161.6253-5.6334-81.363815.5684
700.57640.1166-0.19031.2722-0.91460.94-0.0430.0403-0.7649-0.04740.0046-1.13570.74561.1098-01.3424-0.1305-0.08471.4312-0.37051.6431-11.398-106.904313.7409
710.9013-1.05052.13931.9466-3.51376.48610.3672-1.20551.0157-1.01081.44870.5165-0.6211-1.1851.11741.7746-0.13660.39271.8665-0.58252.7963-35.9275-45.364143.7525
722.0631.92760.69184.9129-1.13011.38590.7848-0.77580.85750.0253-0.75121.8188-0.555-1.16790.56881.3418-0.03350.08671.3357-0.62311.0278-34.2132-70.333143.2057
730.76550.6444-0.00092.13180.55170.6492-0.2887-0.79420.71941.0924-0.0834-0.09140.0455-0.2137-0.05160.6437-0.1143-0.15281.0257-0.16681.1395-22.991-80.399541.7666
741.86261.60080.21913.35750.41573.42210.04050.27110.6947-0.10480.15630.5049-0.1665-0.55380.00370.8683-0.2029-0.02140.8875-0.1530.9954-29.4321-73.919533.6064
750.9860.32730.59880.70960.0070.36850.03290.01830.15910.1144-0.24810.02210.40590.3515-01.3454-0.2614-0.23761.2046-0.19151.3966-25.4117-94.278525.7896
760.31960.2930.38250.36280.72151.33020.74920.7156-0.0877-0.0552-0.54471.0043-0.2764-1.67260.01990.9408-0.11660.22271.289-0.03241.3926-41.4072-79.605521.4765
771.145-0.24791.11340.8849-1.27472.2841-0.48940.02380.22860.22310.29880.63860.4121-1.07790.0010.9809-0.2932-0.04931.1096-0.17141.0868-47.1165-86.425327.6067
780.25080.0594-0.20540.00070.01070.1804-0.21370.18680.47490.16880.32260.55421.96750.1848-02.7819-0.1848-0.57291.9169-0.21142.1345-16.9643-102.830259.3501
792.55760.4738-0.88370.0802-0.16250.31560.3987-2.78591.33580.96230.8503-0.43580.51631.19030.86151.9355-0.0844-0.74092.4954-0.36721.7331-5.3436-98.555855.2132
800.0111-0.0283-0.04710.06380.07690.08731.0615-0.0151.1867-0.35080.6912-0.66550.03990.61320.00011.8720.1424-0.22062.6870.03462.73557.8512-93.853857.3776
811.10250.1862-0.95021.7471-0.89861.12980.2404-1.0413-0.5080.578-0.3448-0.33010.87540.16160.00011.7856-0.0631-0.42971.4986-0.02431.5933-14.144-109.277748.0672
820.91520.9865-0.01351.04380.04281.24211.1113-0.7889-0.23290.1443-0.09840.0731.4431-0.37470.06151.5565-0.06210.15971.3888-0.14681.043-37.122-75.16258.8625
830.84571.63520.04483.5708-0.35152.97970.1090.06090.37310.6171-0.44631.1041-0.4722-0.3861.44861.7495-0.4989-0.0382.0302-0.91971.7989-30.2398-65.830660.3581
840.06260.0513-0.03570.0834-0.09280.08790.17080.44420.2410.0597-0.03270.42261.0405-0.9271-0.00031.5837-0.4455-0.08032.35840.25192.44095.6972-80.472759.102
850.0237-0.0049-0.0173-0.00060.00740.0034-0.04780.5299-0.1708-0.45910.297-0.34050.16610.7281-0.00011.8226-1.0615-0.23463.01920.2651.762923.0365-75.589256.48
860.0012-0.009-0.00250.15340.03980.00970.0350.1944-0.1782-0.1548-0.14120.09380.0323-0.1066-0.42121.5354-0.421-0.9723.3795-0.94272.65323.2635-70.345159.6234
870.0527-0.05840.11590.238-0.30850.363-0.1694-1.47260.23520.58230.1511-0.8134-0.45511.78502.2197-0.2532-0.56892.4876-0.58212.32921.5554-61.01471.3853
881.28990.077-0.28090.69210.30755.06450.43610.9844-1.16590.26550.8834-1.69120.85172.4416-1.49851.8281-0.7088-0.48012.8116-1.05042.567219.5122-63.020159.0146
890.8795-0.749-0.48462.0928-0.33960.8250.776-0.6799-0.9830.8916-0.437-0.50190.19210.5917-1.01441.6269-0.3217-0.80892.3599-0.83752.581419.7397-55.944861.5569
902.25370.3178-1.48470.6789-0.35241.00630.5753-1.9504-0.63480.665-0.6715-0.8236-1.05470.7353-0.19031.8593-0.1587-0.65383.4486-1.02012.827417.7064-74.350366.1423
精密化 TLSグループ
IDRefine-IDRefine TLS-IDSelection detailsAuth asym-IDAuth seq-ID
1X-RAY DIFFRACTION1chain 'A' and (resid 3 through 33 )A3 - 33
2X-RAY DIFFRACTION2chain 'A' and (resid 34 through 67 )A34 - 67
3X-RAY DIFFRACTION3chain 'A' and (resid 68 through 118 or resid 1001)A68 - 118
4X-RAY DIFFRACTION3chain 'A' and (resid 68 through 118 or resid 1001)A1001
5X-RAY DIFFRACTION4chain 'A' and (resid 119 through 219 or resid 1002 )A119 - 219
6X-RAY DIFFRACTION4chain 'A' and (resid 119 through 219 or resid 1002 )A1002
7X-RAY DIFFRACTION5chain 'A' and (resid 220 through 269 )A220 - 269
8X-RAY DIFFRACTION6chain 'A' and (resid 270 through 327 )A270 - 327
9X-RAY DIFFRACTION7chain 'A' and (resid 328 through 382 )A328 - 382
10X-RAY DIFFRACTION8chain 'A' and (resid 383 through 430 )A383 - 430
11X-RAY DIFFRACTION9chain 'B' and (resid 1 through 59 or resid 1001)B0
12X-RAY DIFFRACTION10chain 'B' and (resid 60 through 136 )B60 - 136
13X-RAY DIFFRACTION11chain 'B' and (resid 137 through 188 )B137 - 188
14X-RAY DIFFRACTION12chain 'B' and (resid 189 through 256 )B189 - 256
15X-RAY DIFFRACTION13chain 'C' and (resid 9 through 38 )C9 - 38
16X-RAY DIFFRACTION14chain 'C' and (resid 39 through 53 )C39 - 53
17X-RAY DIFFRACTION15chain 'C' and (resid 54 through 187 or resid 1001)C54 - 187
18X-RAY DIFFRACTION15chain 'C' and (resid 54 through 187 or resid 1001)C1001
19X-RAY DIFFRACTION16chain 'E' and (resid 3 through 33 )E3 - 33
20X-RAY DIFFRACTION17chain 'E' and (resid 34 through 219 or resseq 1001:1002)E34 - 219
21X-RAY DIFFRACTION17chain 'E' and (resid 34 through 219 or resseq 1001:1002)E1001 - 1002
22X-RAY DIFFRACTION18chain 'E' and (resid 220 through 295 )E220 - 295
23X-RAY DIFFRACTION19chain 'E' and (resid 296 through 327 )E296 - 327
24X-RAY DIFFRACTION20chain 'E' and (resid 328 through 382 )E328 - 382
25X-RAY DIFFRACTION21chain 'E' and (resid 383 through 430 )E383 - 430
26X-RAY DIFFRACTION22chain 'F' and (resid 1 through 79 or resid 1001)F0
27X-RAY DIFFRACTION23chain 'F' and (resid 80 through 256 )F80 - 256
28X-RAY DIFFRACTION24chain 'G' and (resid 9 through 38 )G9 - 38
29X-RAY DIFFRACTION25chain 'G' and (resid 39 through 53 )G39 - 53
30X-RAY DIFFRACTION26chain 'G' and (resid 54 through 114 )G54 - 114
31X-RAY DIFFRACTION27chain 'G' and (resid 115 through 187 or resid 1001)G115 - 187
32X-RAY DIFFRACTION27chain 'G' and (resid 115 through 187 or resid 1001)G1001
33X-RAY DIFFRACTION28chain 'K' and (resid 3 through 67 )K3 - 67
34X-RAY DIFFRACTION29chain 'K' and (resid 68 through 187 or resid 1001)K68 - 187
35X-RAY DIFFRACTION29chain 'K' and (resid 68 through 187 or resid 1001)K1001
36X-RAY DIFFRACTION30chain 'K' and (resid 188 through 219 or resid 1002)K188 - 219
37X-RAY DIFFRACTION30chain 'K' and (resid 188 through 219 or resid 1002)K1002
38X-RAY DIFFRACTION31chain 'K' and (resid 220 through 269 )K220 - 269
39X-RAY DIFFRACTION32chain 'K' and (resid 270 through 327 )K270 - 327
40X-RAY DIFFRACTION33chain 'K' and (resid 328 through 360 )K328 - 360
41X-RAY DIFFRACTION34chain 'K' and (resid 361 through 430 )K361 - 430
42X-RAY DIFFRACTION35chain 'L' and (resid 1 through 34 )L1 - 34
43X-RAY DIFFRACTION36chain 'L' and (resid 35 through 59 or resid 1001)L35 - 59
44X-RAY DIFFRACTION36chain 'L' and (resid 35 through 59 or resid 1001)L1001
45X-RAY DIFFRACTION37chain 'L' and (resid 60 through 117 )L60 - 117
46X-RAY DIFFRACTION38chain 'L' and (resid 118 through 188 )L118 - 188
47X-RAY DIFFRACTION39chain 'L' and (resid 189 through 256 )L189 - 256
48X-RAY DIFFRACTION40chain 'M' and (resid 9 through 49 )M9 - 49
49X-RAY DIFFRACTION41chain 'M' and (resid 50 through 60 )M50 - 60
50X-RAY DIFFRACTION42chain 'M' and (resid 61 through 87 )M61 - 87
51X-RAY DIFFRACTION43chain 'M' and (resid 88 through 121 )M88 - 121
52X-RAY DIFFRACTION44chain 'M' and (resid 122 through 187 or resid 1001)M122 - 187
53X-RAY DIFFRACTION44chain 'M' and (resid 122 through 187 or resid 1001)M1001
54X-RAY DIFFRACTION45chain 'O' and (resid 3 through 219 or resseq 1001:1002)O3 - 219
55X-RAY DIFFRACTION45chain 'O' and (resid 3 through 219 or resseq 1001:1002)O1001 - 1002
56X-RAY DIFFRACTION46chain 'O' and (resid 220 through 430 )O220 - 430
57X-RAY DIFFRACTION47chain 'P' and (resid 1 through 34 )P1 - 34
58X-RAY DIFFRACTION48chain 'P' and (resid 35 through 117 or resid 1001)P35 - 117
59X-RAY DIFFRACTION48chain 'P' and (resid 35 through 117 or resid 1001)P1001
60X-RAY DIFFRACTION49chain 'P' and (resid 118 through 203 )P118 - 203
61X-RAY DIFFRACTION50chain 'P' and (resid 204 through 222 )P204 - 222
62X-RAY DIFFRACTION51chain 'P' and (resid 223 through 256 )P223 - 256
63X-RAY DIFFRACTION52chain 'Q' and (resid 9 through 38 )Q9 - 38
64X-RAY DIFFRACTION53chain 'Q' and (resid 39 through 76 )Q39 - 76
65X-RAY DIFFRACTION54chain 'Q' and (resid 77 through 187 or resid 1001)Q77 - 187
66X-RAY DIFFRACTION54chain 'Q' and (resid 77 through 187 or resid 1001)Q1001
67X-RAY DIFFRACTION55chain 'S' and (resid 3 through 33 )S3 - 33
68X-RAY DIFFRACTION56chain 'S' and (resid 34 through 67 )S34 - 67
69X-RAY DIFFRACTION57chain 'S' and (resid 68 through 149 or resid 1001)S68 - 149
70X-RAY DIFFRACTION57chain 'S' and (resid 68 through 149 or resid 1001)S1001
71X-RAY DIFFRACTION58chain 'S' and (resid 150 through 187 )S150 - 187
72X-RAY DIFFRACTION59chain 'S' and (resid 188 through 219 or resid 1002)S188 - 219
73X-RAY DIFFRACTION59chain 'S' and (resid 188 through 219 or resid 1002)S1002
74X-RAY DIFFRACTION60chain 'S' and (resid 220 through 269 )S220 - 269
75X-RAY DIFFRACTION61chain 'S' and (resid 270 through 327 )S270 - 327
76X-RAY DIFFRACTION62chain 'S' and (resid 328 through 382 )S328 - 382
77X-RAY DIFFRACTION63chain 'S' and (resid 383 through 430 )S383 - 430
78X-RAY DIFFRACTION64chain 'T' and (resid 1 through 34 )T1 - 34
79X-RAY DIFFRACTION65chain 'T' and (resid 35 through 117 or resid 1001)T35 - 117
80X-RAY DIFFRACTION65chain 'T' and (resid 35 through 117 or resid 1001)T1001
81X-RAY DIFFRACTION66chain 'T' and (resid 118 through 136 )T118 - 136
82X-RAY DIFFRACTION67chain 'T' and (resid 137 through 157 )T137 - 157
83X-RAY DIFFRACTION68chain 'T' and (resid 158 through 256 )T158 - 256
84X-RAY DIFFRACTION69chain 'U' and (resid 9 through 76 )U9 - 76
85X-RAY DIFFRACTION70chain 'U' and (resid 77 through 187 or resid 1001)U77 - 187
86X-RAY DIFFRACTION70chain 'U' and (resid 77 through 187 or resid 1001)U1001
87X-RAY DIFFRACTION71chain 'W' and (resid 3 through 33 )W3 - 33
88X-RAY DIFFRACTION72chain 'W' and (resid 34 through 67 )W34 - 67
89X-RAY DIFFRACTION73chain 'W' and (resid 68 through 118 or resid 1001 )W68 - 118
90X-RAY DIFFRACTION73chain 'W' and (resid 68 through 118 or resid 1001 )W1001
91X-RAY DIFFRACTION74chain 'W' and (resid 119 through 269 or resid 1002)W119 - 269
92X-RAY DIFFRACTION74chain 'W' and (resid 119 through 269 or resid 1002)W1002
93X-RAY DIFFRACTION75chain 'W' and (resid 270 through 327 )W270 - 327
94X-RAY DIFFRACTION76chain 'W' and (resid 328 through 360 )W328 - 360
95X-RAY DIFFRACTION77chain 'W' and (resid 361 through 430 )W361 - 430
96X-RAY DIFFRACTION78chain 'X' and (resid 1 through 34 )X1 - 34
97X-RAY DIFFRACTION79chain 'X' and (resid 35 through 59 or resid 1001 )X35 - 59
98X-RAY DIFFRACTION79chain 'X' and (resid 35 through 59 or resid 1001 )X1001
99X-RAY DIFFRACTION80chain 'X' and (resid 60 through 79 )X60 - 79
100X-RAY DIFFRACTION81chain 'X' and (resid 80 through 222 )X80 - 222
101X-RAY DIFFRACTION82chain 'X' and (resid 223 through 256 )X223 - 256
102X-RAY DIFFRACTION83chain 'Y' and (resid 9 through 38 )Y9 - 38
103X-RAY DIFFRACTION84chain 'Y' and (resid 39 through 53 )Y39 - 53
104X-RAY DIFFRACTION85chain 'Y' and (resid 54 through 69 )Y54 - 69
105X-RAY DIFFRACTION86chain 'Y' and (resid 70 through 78 )Y70 - 78
106X-RAY DIFFRACTION87chain 'Y' and (resid 79 through 114 )Y79 - 114
107X-RAY DIFFRACTION88chain 'Y' and (resid 115 through 153 or resid 1001)Y115 - 153
108X-RAY DIFFRACTION88chain 'Y' and (resid 115 through 153 or resid 1001)Y1001
109X-RAY DIFFRACTION89chain 'Y' and (resid 154 through 166 )Y154 - 166
110X-RAY DIFFRACTION90chain 'Y' and (resid 167 through 187 )Y167 - 187

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万見について

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お知らせ

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2022年2月9日: EMDBエントリの付随情報ファイルのフォーマットが新しくなりました

EMDBエントリの付随情報ファイルのフォーマットが新しくなりました

  • EMDBのヘッダファイルのバージョン3が、公式のフォーマットとなりました。
  • これまでは公式だったバージョン1.9は、アーカイブから削除されます。

関連情報:EMDBヘッダ

外部リンク:wwPDBはEMDBデータモデルのバージョン3へ移行します

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2020年8月12日: 新型コロナ情報

新型コロナ情報

URL: https://pdbjlvh1.pdbj.org/emnavi/covid19.php

新ページ: EM Navigatorに新型コロナウイルスの特設ページを開設しました。

関連情報:Covid-19情報 / 2020年3月5日: 新型コロナウイルスの構造データ

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2020年3月5日: 新型コロナウイルスの構造データ

新型コロナウイルスの構造データ

関連情報:万見生物種 / 2020年8月12日: 新型コロナ情報

外部リンク:COVID-19特集ページ - PDBj / 今月の分子2020年2月：コロナウイルスプロテーアーゼ

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2019年1月31日: EMDBのIDの桁数の変更

EMDBのIDの桁数の変更

  • EMDBエントリに付与されているアクセスコード(EMDB-ID)は4桁の数字(例、EMD-1234)でしたが、間もなく枯渇します。これまでの4桁のID番号は4桁のまま変更されませんが、4桁の数字を使い切った後に発行されるIDは5桁以上の数字(例、EMD-12345)になります。5桁のIDは2019年の春頃から発行される見通しです。
  • EM Navigator/万見では、接頭語「EMD-」は省略されています。

関連情報:Q: 「EMD」とは何ですか？ / 万見/EM NavigatorにおけるID/アクセスコードの表記

外部リンク:EMDB Accession Codes are Changing Soon! / PDBjへお問い合わせ

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2017年7月12日: PDB大規模アップデート

PDB大規模アップデート

  • 新バージョンのPDBx/mmCIF辞書形式に基づくデータがリリースされました。
  • 今回の更新はバージョン番号が4から5になる大規模なもので、全エントリデータの書き換えが行われる「Remediation」というアップデートに該当します。
  • このバージョンアップで、電子顕微鏡の実験手法に関する多くの項目の書式が改定されました(例：em_softwareなど)。
  • EM NavigatorとYorodumiでも、この改定に基づいた表示内容になります。

外部リンク:wwPDB Remediation / OneDepデータ基準に準拠した、より強化された内容のモデル構造ファイルが、PDBアーカイブで公開されました。

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万見 (Yorodumi)

幾万の構造データを、幾万の視点から

  • 万見(Yorodumi)は、EMDB/PDB/SASBDBなどの構造データを閲覧するためのページです。
  • EM Navigatorの詳細ページの後継、Omokage検索のフロントエンドも兼ねています。

関連情報:EMDB / PDB / SASBDB / 3つのデータバンクの比較 / 万見検索 / 2016年8月31日: 新しいEM Navigatorと万見 / 万見文献 / Jmol/JSmol / 機能・相同性情報 / 新しいEM Navigatorと万見の変更点

他の情報も見る