[English] 日本語
Yorodumi
- PDB-6nin: Rhodobacter sphaeroides bc1 with STIGMATELLIN A -

+
Open data


ID or keywords:

Loading...

-
Basic information

Entry
Database: PDB / ID: 6nin
TitleRhodobacter sphaeroides bc1 with STIGMATELLIN A
Components
  • Cytochrome b
  • Cytochrome c1
  • Ubiquinol-cytochrome c reductase iron-sulfur subunit
KeywordsOXIDOREDUCTASE/INHIBITOR / Mitochondrial respiratory chain complex / cytochrome bc1 / inhibitors / electron transfer / OXIDOREDUCTASE / OXIDOREDUCTASE-INHIBITOR complex
Function / homology
Function and homology information


respiratory chain complex III / quinol-cytochrome-c reductase / ubiquinol-cytochrome-c reductase activity / respiratory electron transport chain / 2 iron, 2 sulfur cluster binding / electron transfer activity / heme binding / membrane / metal ion binding / plasma membrane
Similarity search - Function
Ubiquitinol-cytochrome C reductase, Fe-S subunit, TAT signal / Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal / Cytochrome Bc1 Complex; Chain C / Cytochrome Bc1 Complex; Chain C / Cytochrome c1, transmembrane anchor, C-terminal / Cytochrome b / : / : / Ubiquinol-cytochrome c reductase, iron-sulphur subunit / Cytochrome c1 ...Ubiquitinol-cytochrome C reductase, Fe-S subunit, TAT signal / Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal / Cytochrome Bc1 Complex; Chain C / Cytochrome Bc1 Complex; Chain C / Cytochrome c1, transmembrane anchor, C-terminal / Cytochrome b / : / : / Ubiquinol-cytochrome c reductase, iron-sulphur subunit / Cytochrome c1 / Cytochrome C1 family / Cytochrome b/b6, C-terminal / Cytochrome b(C-terminal)/b6/petD / Cytochrome b/b6 C-terminal region profile. / Twin-arginine translocation pathway, signal sequence, bacterial/archaeal / Cytochrome b/b6, C-terminal domain superfamily / Cytochrome b/b6/petB / Rieske iron-sulphur protein, C-terminal / Cytochrome b/b6, N-terminal / Cytochrome b/b6-like domain superfamily / Cytochrome b/b6 N-terminal region profile. / Di-haem cytochrome, transmembrane / Rieske iron-sulphur protein / Cytochrome c-like domain / Cytochrome Bc1 Complex; Chain D, domain 2 / Rieske [2Fe-2S] iron-sulphur domain / Rieske [2Fe-2S] domain / Rieske [2Fe-2S] iron-sulfur domain profile. / Rieske [2Fe-2S] iron-sulphur domain superfamily / Cytochrome c family profile. / Cytochrome c-like domain / Cytochrome c-like domain superfamily / Twin arginine translocation (Tat) signal profile. / Twin-arginine translocation pathway, signal sequence / Single alpha-helices involved in coiled-coils or other helix-helix interfaces / Up-down Bundle / Orthogonal Bundle / Mainly Alpha
Similarity search - Domain/homology
1,2-DIHEXANOYL-SN-GLYCERO-3-PHOSPHOETHANOLAMINE / FE2/S2 (INORGANIC) CLUSTER / HEME C / PROTOPORPHYRIN IX CONTAINING FE / STIGMATELLIN A / STRONTIUM ION / : / : / : / Ubiquinol-cytochrome c reductase iron-sulfur subunit ...1,2-DIHEXANOYL-SN-GLYCERO-3-PHOSPHOETHANOLAMINE / FE2/S2 (INORGANIC) CLUSTER / HEME C / PROTOPORPHYRIN IX CONTAINING FE / STIGMATELLIN A / STRONTIUM ION / : / : / : / Ubiquinol-cytochrome c reductase iron-sulfur subunit / Cytochrome b / Cytochrome c1
Similarity search - Component
Biological speciesRhodobacter sphaeroides (bacteria)
MethodX-RAY DIFFRACTION / SYNCHROTRON / MOLECULAR REPLACEMENT / Resolution: 3.6 Å
AuthorsXia, D. / Zhou, F. / Esser, L.
CitationJournal: J.Biol.Chem. / Year: 2019
Title: Crystal structure of bacterial cytochromebc1in complex with azoxystrobin reveals a conformational switch of the Rieske iron-sulfur protein subunit.
Authors: Esser, L. / Zhou, F. / Yu, C.A. / Xia, D.
History
DepositionDec 31, 2018Deposition site: RCSB / Processing site: RCSB
Revision 1.0Jun 19, 2019Provider: repository / Type: Initial release
Revision 1.1Jun 26, 2019Group: Data collection / Database references / Category: citation / citation_author
Item: _citation.pdbx_database_id_DOI / _citation.pdbx_database_id_PubMed ..._citation.pdbx_database_id_DOI / _citation.pdbx_database_id_PubMed / _citation.title / _citation_author.identifier_ORCID / _citation_author.name
Revision 1.2Aug 21, 2019Group: Data collection / Database references / Category: citation
Item: _citation.journal_volume / _citation.page_first ..._citation.journal_volume / _citation.page_first / _citation.page_last / _citation.title
Revision 1.3Jul 29, 2020Group: Data collection / Derived calculations / Structure summary
Category: chem_comp / entity ...chem_comp / entity / pdbx_chem_comp_identifier / pdbx_entity_nonpoly / struct_conn / struct_conn_type / struct_site / struct_site_gen
Item: _chem_comp.mon_nstd_flag / _chem_comp.name ..._chem_comp.mon_nstd_flag / _chem_comp.name / _chem_comp.type / _entity.pdbx_description / _pdbx_entity_nonpoly.name / _struct_conn.conn_type_id / _struct_conn.id / _struct_conn.pdbx_dist_value / _struct_conn.pdbx_leaving_atom_flag / _struct_conn.ptnr1_auth_asym_id / _struct_conn.ptnr1_auth_comp_id / _struct_conn.ptnr1_auth_seq_id / _struct_conn.ptnr1_label_asym_id / _struct_conn.ptnr1_label_atom_id / _struct_conn.ptnr1_label_comp_id / _struct_conn.ptnr1_label_seq_id / _struct_conn.ptnr2_auth_asym_id / _struct_conn.ptnr2_auth_comp_id / _struct_conn.ptnr2_auth_seq_id / _struct_conn.ptnr2_label_asym_id / _struct_conn.ptnr2_label_atom_id / _struct_conn.ptnr2_label_comp_id / _struct_conn_type.id
Description: Carbohydrate remediation / Provider: repository / Type: Remediation
Revision 1.4Oct 11, 2023Group: Data collection / Database references ...Data collection / Database references / Refinement description / Structure summary
Category: chem_comp / chem_comp_atom ...chem_comp / chem_comp_atom / chem_comp_bond / database_2 / pdbx_initial_refinement_model
Item: _chem_comp.pdbx_synonyms / _database_2.pdbx_DOI / _database_2.pdbx_database_accession

-
Structure visualization

Structure viewerMolecule:
MolmilJmol/JSmol

Downloads & links

-
Assembly

Deposited unit
A: Cytochrome b
B: Cytochrome c1
C: Ubiquinol-cytochrome c reductase iron-sulfur subunit
E: Cytochrome b
F: Cytochrome c1
G: Ubiquinol-cytochrome c reductase iron-sulfur subunit
K: Cytochrome b
L: Cytochrome c1
M: Ubiquinol-cytochrome c reductase iron-sulfur subunit
O: Cytochrome b
P: Cytochrome c1
Q: Ubiquinol-cytochrome c reductase iron-sulfur subunit
S: Cytochrome b
T: Cytochrome c1
U: Ubiquinol-cytochrome c reductase iron-sulfur subunit
W: Cytochrome b
X: Cytochrome c1
Y: Ubiquinol-cytochrome c reductase iron-sulfur subunit
hetero molecules


Theoretical massNumber of molelcules
Total (without water)616,42963
Polymers597,66618
Non-polymers18,76345
Water00
1
A: Cytochrome b
B: Cytochrome c1
C: Ubiquinol-cytochrome c reductase iron-sulfur subunit
E: Cytochrome b
F: Cytochrome c1
G: Ubiquinol-cytochrome c reductase iron-sulfur subunit
hetero molecules


Theoretical massNumber of molelcules
Total (without water)205,88722
Polymers199,2226
Non-polymers6,66516
Water0
TypeNameSymmetry operationNumber
identity operation1_555x,y,z1
Buried area33320 Å2
ΔGint-419 kcal/mol
Surface area70960 Å2
MethodPISA
2
K: Cytochrome b
L: Cytochrome c1
M: Ubiquinol-cytochrome c reductase iron-sulfur subunit
O: Cytochrome b
P: Cytochrome c1
Q: Ubiquinol-cytochrome c reductase iron-sulfur subunit
hetero molecules


Theoretical massNumber of molelcules
Total (without water)205,06620
Polymers199,2226
Non-polymers5,84414
Water0
TypeNameSymmetry operationNumber
identity operation1_555x,y,z1
Buried area31700 Å2
ΔGint-422 kcal/mol
Surface area71320 Å2
MethodPISA
3
S: Cytochrome b
T: Cytochrome c1
U: Ubiquinol-cytochrome c reductase iron-sulfur subunit
W: Cytochrome b
X: Cytochrome c1
Y: Ubiquinol-cytochrome c reductase iron-sulfur subunit
hetero molecules


Theoretical massNumber of molelcules
Total (without water)205,47621
Polymers199,2226
Non-polymers6,25415
Water0
TypeNameSymmetry operationNumber
identity operation1_555x,y,z1
Buried area32730 Å2
ΔGint-429 kcal/mol
Surface area71140 Å2
MethodPISA
Unit cell
Length a, b, c (Å)356.661, 145.752, 162.223
Angle α, β, γ (deg.)90.000, 104.970, 90.000
Int Tables number5
Space group name H-MC121
Noncrystallographic symmetry (NCS)NCS domain:
IDEns-IDDetails
11(chain A and (resid 3 through 1002 or resid 1101))
21(chain E and resid 3 through 1101)
31chain K
41chain O
51chain S
61(chain W and (resid 3 through 1002 or resid 1101))
12(chain B and resid 1 through 1001)
22(chain F and resid 1 through 1001)
32(chain L and resid 1 through 1001)
42(chain P and resid 1 through 1001)
52(chain T and resid 1 through 1001)
62(chain X and resid 1 through 1001)
13chain C
23chain G
33chain M
43chain Q
53chain U
63chain Y

NCS domain segments:
Dom-IDComponent-IDEns-IDSelection detailsAuth asym-IDAuth seq-ID
111(chain A and (resid 3 through 1002 or resid 1101))A3 - 1002
121(chain A and (resid 3 through 1002 or resid 1101))A1101
211(chain E and resid 3 through 1101)E3 - 1101
311chain KK3 - 1002
411chain OO3 - 1002
511chain SS3 - 1002
611(chain W and (resid 3 through 1002 or resid 1101))W3 - 1002
621(chain W and (resid 3 through 1002 or resid 1101))W1101
112(chain B and resid 1 through 1001)B1 - 1001
212(chain F and resid 1 through 1001)F1 - 1001
312(chain L and resid 1 through 1001)L1 - 1001
412(chain P and resid 1 through 1001)P1 - 1001
512(chain T and resid 1 through 1001)T1 - 1001
612(chain X and resid 1 through 1001)X1 - 1001
113chain CC9 - 1001
213chain GG9 - 1001
313chain MM9 - 1001
413chain QQ9 - 1001
513chain UU9 - 1001
613chain YY9 - 1001

NCS ensembles :
ID
1
2
3

-
Components

-
Protein , 3 types, 18 molecules AEKOSWBFLPTXCGMQUY

#1: Protein
Cytochrome b


Mass: 50119.488 Da / Num. of mol.: 6 / Source method: isolated from a natural source / Details: Mutation at Ala185 to Cys
Source: (natural) Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) (bacteria)
Strain: ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158 / References: UniProt: A0A344Q9J3, UniProt: Q3IY10*PLUS
#2: Protein
Cytochrome c1


Mass: 29589.158 Da / Num. of mol.: 6 / Source method: isolated from a natural source
Source: (natural) Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) (bacteria)
Strain: ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158 / References: UniProt: A0A344Q9J2, UniProt: Q3IY11*PLUS
#3: Protein
Ubiquinol-cytochrome c reductase iron-sulfur subunit


Mass: 19902.338 Da / Num. of mol.: 6 / Mutation: K70C / Source method: isolated from a natural source
Source: (natural) Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) (bacteria)
Strain: ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158
References: UniProt: A0A344Q9J4, UniProt: Q3IY09*PLUS, quinol-cytochrome-c reductase

-
Sugars , 1 types, 6 molecules

#9: Sugar
ChemComp-BOG / octyl beta-D-glucopyranoside / Beta-Octylglucoside / octyl beta-D-glucoside / octyl D-glucoside / octyl glucoside


Type: D-saccharide / Mass: 292.369 Da / Num. of mol.: 6
Source method: isolated from a genetically manipulated source
Formula: C14H28O6 / Comment: detergent*YM
IdentifierTypeProgram
b-octylglucosideIUPAC CARBOHYDRATE SYMBOLPDB-CARE 1.0

-
Non-polymers , 6 types, 39 molecules

#4: Chemical
ChemComp-HEM / PROTOPORPHYRIN IX CONTAINING FE / HEME


Mass: 616.487 Da / Num. of mol.: 12 / Source method: obtained synthetically / Formula: C34H32FeN4O4
#5: Chemical
ChemComp-SMA / STIGMATELLIN A


Mass: 514.650 Da / Num. of mol.: 6 / Source method: obtained synthetically / Formula: C30H42O7
#6: Chemical ChemComp-6PE / 1,2-DIHEXANOYL-SN-GLYCERO-3-PHOSPHOETHANOLAMINE


Mass: 410.420 Da / Num. of mol.: 3 / Source method: obtained synthetically / Formula: C17H33NO8P
#7: Chemical
ChemComp-HEC / HEME C


Mass: 618.503 Da / Num. of mol.: 6 / Source method: obtained synthetically / Formula: C34H34FeN4O4
#8: Chemical
ChemComp-SR / STRONTIUM ION


Mass: 87.620 Da / Num. of mol.: 6 / Source method: obtained synthetically / Formula: Sr
#10: Chemical
ChemComp-FES / FE2/S2 (INORGANIC) CLUSTER


Mass: 175.820 Da / Num. of mol.: 6 / Source method: obtained synthetically / Formula: Fe2S2

-
Experimental details

-
Experiment

ExperimentMethod: X-RAY DIFFRACTION / Number of used crystals: 1

-
Sample preparation

CrystalDensity Matthews: 3.41 Å3/Da / Density % sol: 63.91 %
Crystal growTemperature: 289 K / Method: vapor diffusion, sitting drop / pH: 7.5
Details: 50 mM Tris pH 7.5, 200 mM NaCl, 200 mM histidine, 0.5% beta-octyl glucoside, 10% glycerol, 5 mM NaN3 and 1.25 mM sodium ascorbate, 5-8% PEG400 0.12-0.30% SMC
Temp details: constant

-
Data collection

DiffractionMean temperature: 100 K / Serial crystal experiment: N
Diffraction sourceSource: SYNCHROTRON / Site: APS / Beamline: 22-ID / Wavelength: 0.827 Å
DetectorType: MARMOSAIC 300 mm CCD / Detector: CCD / Date: Jun 7, 2009
RadiationMonochromator: Si111 / Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray
Radiation wavelengthWavelength: 0.827 Å / Relative weight: 1
ReflectionResolution: 3.5→50 Å / Num. obs: 99255 / % possible obs: 96.5 % / Redundancy: 2.7 % / Rmerge(I) obs: 0.122 / Rpim(I) all: 0.087 / Rrim(I) all: 0.151 / Χ2: 0.999 / Net I/σ(I): 5.7 / Num. measured all: 267497
Reflection shell

Diffraction-ID: 1

Resolution (Å)Redundancy (%)Rmerge(I) obsNum. unique obsCC1/2Rpim(I) allRrim(I) allΧ2% possible all
3.5-3.582.30.84462500.3430.6531.0720.6891.7
3.58-3.672.40.79964310.3610.6151.0140.75294.7
3.67-3.772.40.66464660.4890.5060.8390.74894.8
3.77-3.882.50.53865030.6340.4070.6780.79594.9
3.88-4.012.50.44864870.7410.3350.5620.82495.3
4.01-4.152.60.36765670.7980.2710.4590.87396.1
4.15-4.322.60.27965990.8940.2030.3470.94696.3
4.32-4.512.70.22665830.9310.1630.280.98596.5
4.51-4.752.70.18166310.9480.1290.2231.13697.2
4.75-5.052.70.16567030.9560.1170.2041.08297.5
5.05-5.442.80.1567120.9650.1050.1831.16698
5.44-5.982.90.13167530.9740.0910.161.23498.5
5.98-6.8530.10368150.9840.070.1251.08998.8
6.85-8.623.10.06168570.9950.040.0731.12399.2
8.62-503.20.04568980.9970.0290.0531.14298.2

-
Processing

Software
NameVersionClassification
DENZOdata reduction
SCALEPACKdata scaling
PHENIXdev_3339refinement
PDB_EXTRACT3.24data extraction
MOLREPphasing
RefinementMethod to determine structure: MOLECULAR REPLACEMENT
Starting model: 2QJY

2qjy


Resolution: 3.6→28.908 Å / SU ML: 0.43 / Cross valid method: THROUGHOUT / σ(F): 1.03 / Phase error: 29.19
RfactorNum. reflection% reflection
Rfree0.2802 1087 1.2 %
Rwork0.2493 --
obs0.2496 90336 97.23 %
Solvent computationShrinkage radii: 0.9 Å / VDW probe radii: 1.11 Å
Displacement parametersBiso max: 316.7 Å2 / Biso mean: 147.3774 Å2 / Biso min: 58.07 Å2
Refinement stepCycle: final / Resolution: 3.6→28.908 Å
ProteinNucleic acidLigandSolventTotal
Num. atoms40362 0 2298 0 42660
Biso mean--129.02 --
Num. residues----5178
Refine LS restraints NCS
Ens-IDDom-IDAuth asym-IDNumberRefine-IDRmsType
11A10323X-RAY DIFFRACTION3.635TORSIONAL
12E10323X-RAY DIFFRACTION3.635TORSIONAL
13K10323X-RAY DIFFRACTION3.635TORSIONAL
14O10323X-RAY DIFFRACTION3.635TORSIONAL
15S10323X-RAY DIFFRACTION3.635TORSIONAL
16W10323X-RAY DIFFRACTION3.635TORSIONAL
21B7359X-RAY DIFFRACTION3.635TORSIONAL
22F7359X-RAY DIFFRACTION3.635TORSIONAL
23L7359X-RAY DIFFRACTION3.635TORSIONAL
24P7359X-RAY DIFFRACTION3.635TORSIONAL
25T7359X-RAY DIFFRACTION3.635TORSIONAL
26X7359X-RAY DIFFRACTION3.635TORSIONAL
31C4998X-RAY DIFFRACTION3.635TORSIONAL
32G4998X-RAY DIFFRACTION3.635TORSIONAL
33M4998X-RAY DIFFRACTION3.635TORSIONAL
34Q4998X-RAY DIFFRACTION3.635TORSIONAL
35U4998X-RAY DIFFRACTION3.635TORSIONAL
36Y4998X-RAY DIFFRACTION3.635TORSIONAL
LS refinement shell

Refine-ID: X-RAY DIFFRACTION / Rfactor Rfree error: 0 / Total num. of bins used: 8

Resolution (Å)Rfactor RfreeNum. reflection RfreeRfactor RworkNum. reflection RworkNum. reflection all% reflection obs (%)
3.6-3.76350.35491330.3296108921102595
3.7635-3.96150.29231340.2884109481108296
3.9615-4.2090.30681340.2615109781111297
4.209-4.53280.25591350.2336111201125597
4.5328-4.98690.26011360.2245111781131498
4.9869-5.70370.26731370.2369112781141598
5.7037-7.16790.27431400.258113971153799
7.1679-28.90930.27731380.2345114581159698
Refinement TLS params.

Method: refined / Refine-ID: X-RAY DIFFRACTION

IDL11 (°2)L12 (°2)L13 (°2)L22 (°2)L23 (°2)L33 (°2)S11 (Å °)S12 (Å °)S13 (Å °)S21 (Å °)S22 (Å °)S23 (Å °)S31 (Å °)S32 (Å °)S33 (Å °)T11 (Å2)T12 (Å2)T13 (Å2)T22 (Å2)T23 (Å2)T33 (Å2)Origin x (Å)Origin y (Å)Origin z (Å)
10.5529-0.1882-0.33680.1750.0680.20120.0309-0.11541.5562-1.07971.06020.219-0.7371-0.3491-0.00021.7694-0.40550.08791.57790.1832.058651.63195.6904120.9362
24.83772.32353.08451.24491.99294.8641-0.89530.91541.5789-0.3141-0.39370.8473-1.688-0.1032-2.98780.7139-0.38860.36290.9729-0.04480.42175.27498.5113127.5074
32.0911.22491.00930.87570.95482.0749-0.16030.35120.012-0.50970.4017-0.65410.13060.4507-0.00010.9772-0.24420.15890.9796-0.11820.928785.725389.6261133.7828
42.64010.8048-1.09862.00871.46662.69330.0616-0.04020.81910.2231-0.1036-0.0446-0.15380.1087-0.01010.8988-0.34520.19480.8344-0.24120.902479.684191.179146.0129
53.3377-0.074-0.68052.6722-0.28270.3349-0.20.49330.9723-0.69820.63791.1093-0.8813-0.35710.07941.2163-0.3703-0.00121.13320.03191.164170.8621107.5479122.712
61.1850.04490.29780.37180.45280.4961-0.63330.0360.4187-0.12520.1278-0.1624-0.2158-0.51980.0051.3226-0.2978-0.07110.9905-0.26381.117794.917497.5928151.2551
75.71052.8548-0.98371.45070.20157.1744-0.31510.96661.9304-0.44950.4080.9452-1.3927-1.24640.18430.6974-0.33830.07320.3949-0.35560.947482.44112.768145.4494
80.14990.17530.37520.68540.19440.8364-0.15060.0981.1137-0.115-0.22550.1233-0.39510.1771-0.00831.1891-0.1794-0.06871.0929-0.23911.46683.8509117.7111143.1808
90.24790.0587-0.2060.8342-1.02441.2903-0.27140.9950.40170.06990.0447-0.2116-0.99660.4531-0.00821.5151-0.44740.00511.5688-0.28381.6005110.696278.5254126.3387
101.7672-0.2495-0.66420.30520.5821.3972-0.076-0.27260.1281-1.27430.24370.86120.31870.1215-01.7983-0.3265-0.33371.4809-0.14031.6932107.553875.8292132.8613
110.5103-0.14210.40140.2586-0.18790.3925-0.0187-0.5780.1895-0.0704-0.6147-0.6279-0.66550.445901.4191-0.2756-0.16591.7405-0.23592.073123.579590.2523146.6814
121.13531.3951-0.0821.78620.03762.51831.15660.21740.1251-0.7613-0.3868-0.48410.46410.44090.15461.2102-0.53660.42461.0164-0.15960.6733100.325788.6949118.696
131.7419-2.0422-1.79372.68281.56433.89860.74371.52661.2812-0.7666-0.48460.475-1.0016-1.1741-0.77151.2092-0.38620.04111.88420.35031.413576.563489.8225110.3409
140.01930.03420.0650.06540.12350.3938-0.10420.16130.65910.50680.43030.0609-0.52610.33140.00010.9814-0.30590.22361.4194-0.17152.044792.912358.2314124.1873
151.31180.0734-0.47131.2531-0.5681.49510.0433-0.4141-0.41410.24790.1037-1.07540.06881.2593-0.01621.2947-0.2635-0.13351.1781-0.20261.165381.085840.6243120.8437
160.10730.0089-0.06180.0979-0.05180.05520.7454-0.79330.72530.0197-0.47471.60220.5369-1.412901.6607-0.22560.07851.59710.02092.321750.2027102.106144.1475
171.68011.20651.11453.81161.20811.68440.073-0.15660.0361-0.02810.06710.30730.0382-0.3702-00.9617-0.21860.03220.8994-0.02670.650563.555770.8648137.7967
181.0085-0.0981-1.05220.10350.23041.30010.10110.16290.52820.4007-0.13680.0979-0.0432-0.3301-01.0951-0.30440.01951.147-0.10611.202252.016171.5299144.6435
190.41520.2690.48610.14210.29010.47760.1175-0.03640.3887-0.5793-0.2960.5757-0.19050.70670.00021.5489-0.188-0.17281.2125-0.22411.112859.324952.8342120.1415
201.7840.5676-1.35391.4396-0.2512.65840.17330.3830.8720.41210.33991.0044-0.0748-1.13780.24360.8522-0.52250.06950.8814-0.18330.930746.152462.8383127.3805
211.1150.2166-0.24890.1118-0.16131.3213-0.2124-0.06450.2375-0.0506-0.01451.09850.0667-0.8795-0.01051.1343-0.287-0.06071.2149-0.01191.37641.119761.0361128.6237
221.2569-1.6004-0.35912.00640.61051.9937-0.0091-0.23450.51990.34390.12880.07280.5748-0.12860.00012.1246-0.3378-0.36421.3988-0.00521.53781.23351.2541162.5805
231.85360.0062-0.24472.44060.40961.27480.378-0.3573-0.5510.3653-0.0667-0.01590.5114-0.212701.6879-0.3184-0.22031.1490.061.071569.91446.7775155.0184
241.4411.1641-0.18912.6117-2.27914.63420.4874-0.59150.31540.11370.27360.2866-0.4458-1.162610.87151.5582-0.50430.25751.7675-0.73431.081756.00982.9557162.8305
250.032-0.0363-0.02390.1889-0.24290.49520.17490.1993-0.1016-0.306-0.2543-1.7080.14060.9116-01.61180.0864-0.16971.42790.33242.318892.490770.7787163.8413
260.6837-0.6225-0.42930.8039-0.1951.27470.208-1.15-0.97310.2709-0.4501-0.09220.57530.4161-0.03091.6207-0.1911-0.26721.6289-0.16861.6262107.828886.529170.4732
271.39620.4352-1.07640.3431-0.28670.8084-0.7264-0.8979-0.62860.11470.1109-0.99780.42870.4529-0.06871.2525-0.0895-0.05771.2383-0.18241.281104.870287.1936165.8995
286.38091.55062.35321.58551.74042.0877-0.60571.24721.6576-1.32850.50351.8835-1.2752-0.85640.37420.4723-0.3104-0.45981.88320.28521.541920.783919.132971.9066
293.31381.74030.06922.2242-0.44164.7745-0.33010.43570.41810.16430.36910.1537-0.1124-0.0728-0.00540.5862-0.40690.03420.7479-0.03170.618140.724515.81590.5115
302.9973-0.0471-0.3880.93970.44781.9792-0.0250.27570.48580.008-0.26640.6165-0.14210.0305-1.30110.8305-0.40390.41811.342-0.35150.407231.883612.756988.4252
310.9992-1.2961-0.59524.6527-0.34670.6216-0.35691.4307-0.3145-0.60950.23852.1361-0.4793-1.91820.11131.4022-0.1514-0.44392.60120.20931.419227.191729.938569.7438
321.36670.06920.41251.01050.07160.1188-0.4930.14150.2422-0.09030.2541-0.0354-0.2004-0.072400.9425-0.18010.03930.9171-0.15571.014450.769123.758799.6076
332.58793.3585-0.31065.8130.32763.07820.10160.81851.4714-1.48160.37310.7626-0.6664-1.23550.1040.8720.12980.45881.1282-0.11661.058433.080736.039695.161
342.68860.76510.04482.22771.61921.2775-0.4110.21961.6461-0.6199-0.0930.4136-0.8785-0.0229-0.07830.9885-0.0575-0.09340.92510.10640.858940.36141.511389.2813
350.77480.0990.48521.2485-0.97881.0894-0.2163-0.11220.27830.22340.5519-1.0327-0.70190.4256-0.00011.2805-0.42070.17461.7834-0.33521.570570.18519.227973.5748
360.2707-0.35850.21160.5423-0.20650.18830.18121.2222-0.054-1.2642-0.45040.30950.4031-0.0301-0.00011.1527-0.00930.10551.3788-0.38361.203966.9498-1.567580.0817
372.4945-0.14340.02010.496-0.25550.8588-0.37250.0552-1.3289-0.07610.38560.16220.62730.028301.5416-0.16130.15211.5181-0.38071.683964.8954-3.537384.2109
381.42591.1074-1.06641.87730.06981.7016-0.9224-0.21470.62720.32770.1241-0.5428-0.34540.3451-0.00481.0983-0.23140.04861.15430.01281.398676.711418.216991.937
390.15570.27660.27620.78260.61840.55440.74620.7782-0.0319-0.0746-0.4812-0.70780.81970.14480.1041.4382-0.35370.53791.6482-0.17861.012658.0913.11167.9784
401.435-0.2825-1.37650.84230.66311.45080.38391.182-0.217-0.0123-0.7795-0.0596-0.43850.1858-0.00161.5491-0.4888-0.08131.9442-0.10071.668938.15465.673363.0007
410.86870.7881.73920.7161.57853.48460.6514-0.264-0.21490.2726-0.59510.38782.0606-0.90690.15121.34050.11370.02751.7262-0.68521.693755.1929-36.897582.7466
420.3050.065-0.29190.076-0.04920.254-1.04191.80910.0077-0.3081.26810.61920.49021.28850.00052.0824-0.2535-0.07252.0822-0.45891.844745.2837-38.587778.0301
430.11750.03620.17430.0724-0.13810.75550.49030.6677-0.81670.6474-0.74-0.70421.54272.2082-0.02071.4628-0.2618-0.07562.1152-0.21011.932142.9545-39.553364.7498
440.41780.5131-0.7620.9395-0.89271.2846-0.05920.1916-0.66180.1078-0.4149-0.16690.51020.3571-0.01011.8944-0.2486-0.12291.5636-0.50221.765240.1306-34.107775.1853
451.60921.29920.16533.5805-0.18691.5314-0.1030.8598-0.278-0.41540.36731.6640.2387-0.91210.0510.8508-0.3096-0.11421.35110.06091.068219.9558-2.073487.5123
461.33260.6094-0.72341.24490.55071.2304-0.090.6617-0.1438-0.33920.22440.31490.391-0.51340.00261.2011-0.4148-0.28131.5543-0.2041.8298.5595-14.775181.745
470.16620.0051-0.3471-0.03580.03550.6097-0.41070.45060.5889-0.16990.41181.24551.10120.0661-02.4144-0.10070.49161.6467-0.1042.529530.5568-27.5584115.3595
481.48590.0869-1.37920.5524-0.54211.68070.27570.0209-0.45350.2482-0.2208-0.33510.0883-0.1309-0.00011.8832-0.3068-0.1211.1566-0.12191.92143.6113-21.2227109.0085
490.35010.00460.40531.3890.54190.64080.4695-0.2694-0.49380.2498-0.2708-0.52161.0493-0.0552-02.0908-0.1494-0.14131.3182-0.01022.414533.863-41.5679104.3696
500.26180.0984-0.18560.054-0.09280.1380.4324-0.5631-0.8511.17760.17030.56431.3463-1.13730.00011.8364-0.52210.08691.4260.12181.643533.7706-26.3765113.9257
510.88861.0783-0.06651.53930.42550.88660.9177-0.4901-0.0882-0.03140.5134-0.06630.7921-0.95860.06881.3945-0.25830.21641.93310.24462.0077.16-3.0617109.4343
520.05510.0617-0.03321.8817-1.95722.0497-0.85140.0580.82280.46480.70540.73660.0622-1.28110.06851.1786-0.4440.26371.6477-0.40611.175612.73327.0977110.8338
530.2960.01970.14420.2151-0.29721.38020.4352-0.5658-1.73850.87910.34230.61520.8976-0.77150.00581.485-0.1451-0.00150.85260.00411.661859.38822.777113.2372
541.0368-0.0028-0.36420.8334-0.09290.7806-0.2597-0.5834-0.60820.8783-0.1225-0.63540.17190.5957-0.0060.9955-0.1139-0.08550.9881-0.10151.008661.475816.5905118.2229
550.1217-0.0983-0.11270.22450.03780.07850.1865-0.7441.3249-1.03570.8138-0.3503-1.0062-0.1392-0.00041.6595-0.16490.27811.57320.15983.0785-36.4646-50.601720.5532
568.15062.13141.51113.22244.33826.1759-0.36720.93232.3889-0.7625-0.59420.6462-2.06770.0785-4.39430.0839-0.59790.48741.2444-0.34361.1581-12.105-49.461825.6269
572.5952.0071-0.17562.2136-1.17074.62060.16330.13230.96750.43180.6660.6801-1.18130.17440.03381.2994-0.47070.4671.1471-0.2451.7299-4.7568-55.633334.0986
580.0765-0.05990.10480.0425-0.09690.2848-0.1671-1.30961.2050.9668-0.46430.0385-0.69380.7866-0.04811.5961-0.4513-0.35541.7042-0.48281.97281.8286-64.449651.9672
592.7505-0.2974-1.21451.40571.21671.97360.9187-0.16651.60360.394-0.3596-0.3255-0.75720.33190.09080.9313-0.35160.51640.9854-0.41131.3771-12.3153-59.680637.6301
601.0097-0.31920.43240.287-0.83532.4962-0.2438-0.70391.39780.54520.31990.9245-1.4964-0.50110.12231.9533-0.60180.28831.4586-0.4792.3162-16.3118-39.855321.5958
610.15050.2660.70270.78481.45273.01240.7107-0.62320.53360.63750.2859-0.24390.12171.337-0.8191.8374-1.01270.06132.1729-0.81652.398.897-52.749748.078
620.38870.107-0.54040.1119-0.37121.75380.6065-0.68710.27090.21040.12-0.361-0.63580.2342.47332.0679-0.852-0.07391.4984-0.61052.2444-3.1045-36.667543.986
630.31660.1821-0.24220.9898-1.08851.24150.2135-0.33170.6193-0.65680.1518-0.7167-1.34960.6180.11352.6415-0.3339-0.19391.2944-0.65592.1646-1.5106-31.553841.7527
640.0096-0.0570.05340.0874-0.06010.1685-0.42680.5302-0.4094-0.1960.88410.6138-1.03231.31010.00251.4796-0.55710.22712.6153-0.35982.45223.9207-65.598918.4234
650.5611-0.476-1.2090.31390.83812.1343-0.0471-0.063-0.0102-0.3968-0.002-1.099-0.00761.0539-01.2989-0.0999-0.06362.2587-0.43222.270918.3908-78.415126.6027
661.9831-0.9517-1.01761.1362-0.0720.9985-0.93620.7510.1682-0.73311.3335-1.2693-0.47050.55480.27751.2877-0.8465-0.47653.17130.263.322823.229-57.262626.0006
671.5137-0.5648-1.34960.2130.50081.18810.80210.18870.51290.8062-1.0782-0.10620.7714-2.23960.02011.9361-1.0485-0.20523.7769-0.41482.957941.0304-63.198139.4112
681.61321.3292-1.29323.1740.3343.27910.6722-0.9433-0.20840.31810.1623-0.70750.49980.83060.06211.3681-0.79950.63891.8927-0.36421.688718.4099-59.555922.6587
690.96730.8495-0.5471.2178-0.32871.04920.71680.56480.318-1.0916-0.9236-1.184-0.17210.6944-0.01141.3478-0.26590.0031.7603-0.36161.6253-5.6334-81.363815.5684
700.57640.1166-0.19031.2722-0.91460.94-0.0430.0403-0.7649-0.04740.0046-1.13570.74561.1098-01.3424-0.1305-0.08471.4312-0.37051.6431-11.398-106.904313.7409
710.9013-1.05052.13931.9466-3.51376.48610.3672-1.20551.0157-1.01081.44870.5165-0.6211-1.1851.11741.7746-0.13660.39271.8665-0.58252.7963-35.9275-45.364143.7525
722.0631.92760.69184.9129-1.13011.38590.7848-0.77580.85750.0253-0.75121.8188-0.555-1.16790.56881.3418-0.03350.08671.3357-0.62311.0278-34.2132-70.333143.2057
730.76550.6444-0.00092.13180.55170.6492-0.2887-0.79420.71941.0924-0.0834-0.09140.0455-0.2137-0.05160.6437-0.1143-0.15281.0257-0.16681.1395-22.991-80.399541.7666
741.86261.60080.21913.35750.41573.42210.04050.27110.6947-0.10480.15630.5049-0.1665-0.55380.00370.8683-0.2029-0.02140.8875-0.1530.9954-29.4321-73.919533.6064
750.9860.32730.59880.70960.0070.36850.03290.01830.15910.1144-0.24810.02210.40590.3515-01.3454-0.2614-0.23761.2046-0.19151.3966-25.4117-94.278525.7896
760.31960.2930.38250.36280.72151.33020.74920.7156-0.0877-0.0552-0.54471.0043-0.2764-1.67260.01990.9408-0.11660.22271.289-0.03241.3926-41.4072-79.605521.4765
771.145-0.24791.11340.8849-1.27472.2841-0.48940.02380.22860.22310.29880.63860.4121-1.07790.0010.9809-0.2932-0.04931.1096-0.17141.0868-47.1165-86.425327.6067
780.25080.0594-0.20540.00070.01070.1804-0.21370.18680.47490.16880.32260.55421.96750.1848-02.7819-0.1848-0.57291.9169-0.21142.1345-16.9643-102.830259.3501
792.55760.4738-0.88370.0802-0.16250.31560.3987-2.78591.33580.96230.8503-0.43580.51631.19030.86151.9355-0.0844-0.74092.4954-0.36721.7331-5.3436-98.555855.2132
800.0111-0.0283-0.04710.06380.07690.08731.0615-0.0151.1867-0.35080.6912-0.66550.03990.61320.00011.8720.1424-0.22062.6870.03462.73557.8512-93.853857.3776
811.10250.1862-0.95021.7471-0.89861.12980.2404-1.0413-0.5080.578-0.3448-0.33010.87540.16160.00011.7856-0.0631-0.42971.4986-0.02431.5933-14.144-109.277748.0672
820.91520.9865-0.01351.04380.04281.24211.1113-0.7889-0.23290.1443-0.09840.0731.4431-0.37470.06151.5565-0.06210.15971.3888-0.14681.043-37.122-75.16258.8625
830.84571.63520.04483.5708-0.35152.97970.1090.06090.37310.6171-0.44631.1041-0.4722-0.3861.44861.7495-0.4989-0.0382.0302-0.91971.7989-30.2398-65.830660.3581
840.06260.0513-0.03570.0834-0.09280.08790.17080.44420.2410.0597-0.03270.42261.0405-0.9271-0.00031.5837-0.4455-0.08032.35840.25192.44095.6972-80.472759.102
850.0237-0.0049-0.0173-0.00060.00740.0034-0.04780.5299-0.1708-0.45910.297-0.34050.16610.7281-0.00011.8226-1.0615-0.23463.01920.2651.762923.0365-75.589256.48
860.0012-0.009-0.00250.15340.03980.00970.0350.1944-0.1782-0.1548-0.14120.09380.0323-0.1066-0.42121.5354-0.421-0.9723.3795-0.94272.65323.2635-70.345159.6234
870.0527-0.05840.11590.238-0.30850.363-0.1694-1.47260.23520.58230.1511-0.8134-0.45511.78502.2197-0.2532-0.56892.4876-0.58212.32921.5554-61.01471.3853
881.28990.077-0.28090.69210.30755.06450.43610.9844-1.16590.26550.8834-1.69120.85172.4416-1.49851.8281-0.7088-0.48012.8116-1.05042.567219.5122-63.020159.0146
890.8795-0.749-0.48462.0928-0.33960.8250.776-0.6799-0.9830.8916-0.437-0.50190.19210.5917-1.01441.6269-0.3217-0.80892.3599-0.83752.581419.7397-55.944861.5569
902.25370.3178-1.48470.6789-0.35241.00630.5753-1.9504-0.63480.665-0.6715-0.8236-1.05470.7353-0.19031.8593-0.1587-0.65383.4486-1.02012.827417.7064-74.350366.1423
Refinement TLS group
IDRefine-IDRefine TLS-IDSelection detailsAuth asym-IDAuth seq-ID
1X-RAY DIFFRACTION1chain 'A' and (resid 3 through 33 )A3 - 33
2X-RAY DIFFRACTION2chain 'A' and (resid 34 through 67 )A34 - 67
3X-RAY DIFFRACTION3chain 'A' and (resid 68 through 118 or resid 1001)A68 - 118
4X-RAY DIFFRACTION3chain 'A' and (resid 68 through 118 or resid 1001)A1001
5X-RAY DIFFRACTION4chain 'A' and (resid 119 through 219 or resid 1002 )A119 - 219
6X-RAY DIFFRACTION4chain 'A' and (resid 119 through 219 or resid 1002 )A1002
7X-RAY DIFFRACTION5chain 'A' and (resid 220 through 269 )A220 - 269
8X-RAY DIFFRACTION6chain 'A' and (resid 270 through 327 )A270 - 327
9X-RAY DIFFRACTION7chain 'A' and (resid 328 through 382 )A328 - 382
10X-RAY DIFFRACTION8chain 'A' and (resid 383 through 430 )A383 - 430
11X-RAY DIFFRACTION9chain 'B' and (resid 1 through 59 or resid 1001)B0
12X-RAY DIFFRACTION10chain 'B' and (resid 60 through 136 )B60 - 136
13X-RAY DIFFRACTION11chain 'B' and (resid 137 through 188 )B137 - 188
14X-RAY DIFFRACTION12chain 'B' and (resid 189 through 256 )B189 - 256
15X-RAY DIFFRACTION13chain 'C' and (resid 9 through 38 )C9 - 38
16X-RAY DIFFRACTION14chain 'C' and (resid 39 through 53 )C39 - 53
17X-RAY DIFFRACTION15chain 'C' and (resid 54 through 187 or resid 1001)C54 - 187
18X-RAY DIFFRACTION15chain 'C' and (resid 54 through 187 or resid 1001)C1001
19X-RAY DIFFRACTION16chain 'E' and (resid 3 through 33 )E3 - 33
20X-RAY DIFFRACTION17chain 'E' and (resid 34 through 219 or resseq 1001:1002)E34 - 219
21X-RAY DIFFRACTION17chain 'E' and (resid 34 through 219 or resseq 1001:1002)E1001 - 1002
22X-RAY DIFFRACTION18chain 'E' and (resid 220 through 295 )E220 - 295
23X-RAY DIFFRACTION19chain 'E' and (resid 296 through 327 )E296 - 327
24X-RAY DIFFRACTION20chain 'E' and (resid 328 through 382 )E328 - 382
25X-RAY DIFFRACTION21chain 'E' and (resid 383 through 430 )E383 - 430
26X-RAY DIFFRACTION22chain 'F' and (resid 1 through 79 or resid 1001)F0
27X-RAY DIFFRACTION23chain 'F' and (resid 80 through 256 )F80 - 256
28X-RAY DIFFRACTION24chain 'G' and (resid 9 through 38 )G9 - 38
29X-RAY DIFFRACTION25chain 'G' and (resid 39 through 53 )G39 - 53
30X-RAY DIFFRACTION26chain 'G' and (resid 54 through 114 )G54 - 114
31X-RAY DIFFRACTION27chain 'G' and (resid 115 through 187 or resid 1001)G115 - 187
32X-RAY DIFFRACTION27chain 'G' and (resid 115 through 187 or resid 1001)G1001
33X-RAY DIFFRACTION28chain 'K' and (resid 3 through 67 )K3 - 67
34X-RAY DIFFRACTION29chain 'K' and (resid 68 through 187 or resid 1001)K68 - 187
35X-RAY DIFFRACTION29chain 'K' and (resid 68 through 187 or resid 1001)K1001
36X-RAY DIFFRACTION30chain 'K' and (resid 188 through 219 or resid 1002)K188 - 219
37X-RAY DIFFRACTION30chain 'K' and (resid 188 through 219 or resid 1002)K1002
38X-RAY DIFFRACTION31chain 'K' and (resid 220 through 269 )K220 - 269
39X-RAY DIFFRACTION32chain 'K' and (resid 270 through 327 )K270 - 327
40X-RAY DIFFRACTION33chain 'K' and (resid 328 through 360 )K328 - 360
41X-RAY DIFFRACTION34chain 'K' and (resid 361 through 430 )K361 - 430
42X-RAY DIFFRACTION35chain 'L' and (resid 1 through 34 )L1 - 34
43X-RAY DIFFRACTION36chain 'L' and (resid 35 through 59 or resid 1001)L35 - 59
44X-RAY DIFFRACTION36chain 'L' and (resid 35 through 59 or resid 1001)L1001
45X-RAY DIFFRACTION37chain 'L' and (resid 60 through 117 )L60 - 117
46X-RAY DIFFRACTION38chain 'L' and (resid 118 through 188 )L118 - 188
47X-RAY DIFFRACTION39chain 'L' and (resid 189 through 256 )L189 - 256
48X-RAY DIFFRACTION40chain 'M' and (resid 9 through 49 )M9 - 49
49X-RAY DIFFRACTION41chain 'M' and (resid 50 through 60 )M50 - 60
50X-RAY DIFFRACTION42chain 'M' and (resid 61 through 87 )M61 - 87
51X-RAY DIFFRACTION43chain 'M' and (resid 88 through 121 )M88 - 121
52X-RAY DIFFRACTION44chain 'M' and (resid 122 through 187 or resid 1001)M122 - 187
53X-RAY DIFFRACTION44chain 'M' and (resid 122 through 187 or resid 1001)M1001
54X-RAY DIFFRACTION45chain 'O' and (resid 3 through 219 or resseq 1001:1002)O3 - 219
55X-RAY DIFFRACTION45chain 'O' and (resid 3 through 219 or resseq 1001:1002)O1001 - 1002
56X-RAY DIFFRACTION46chain 'O' and (resid 220 through 430 )O220 - 430
57X-RAY DIFFRACTION47chain 'P' and (resid 1 through 34 )P1 - 34
58X-RAY DIFFRACTION48chain 'P' and (resid 35 through 117 or resid 1001)P35 - 117
59X-RAY DIFFRACTION48chain 'P' and (resid 35 through 117 or resid 1001)P1001
60X-RAY DIFFRACTION49chain 'P' and (resid 118 through 203 )P118 - 203
61X-RAY DIFFRACTION50chain 'P' and (resid 204 through 222 )P204 - 222
62X-RAY DIFFRACTION51chain 'P' and (resid 223 through 256 )P223 - 256
63X-RAY DIFFRACTION52chain 'Q' and (resid 9 through 38 )Q9 - 38
64X-RAY DIFFRACTION53chain 'Q' and (resid 39 through 76 )Q39 - 76
65X-RAY DIFFRACTION54chain 'Q' and (resid 77 through 187 or resid 1001)Q77 - 187
66X-RAY DIFFRACTION54chain 'Q' and (resid 77 through 187 or resid 1001)Q1001
67X-RAY DIFFRACTION55chain 'S' and (resid 3 through 33 )S3 - 33
68X-RAY DIFFRACTION56chain 'S' and (resid 34 through 67 )S34 - 67
69X-RAY DIFFRACTION57chain 'S' and (resid 68 through 149 or resid 1001)S68 - 149
70X-RAY DIFFRACTION57chain 'S' and (resid 68 through 149 or resid 1001)S1001
71X-RAY DIFFRACTION58chain 'S' and (resid 150 through 187 )S150 - 187
72X-RAY DIFFRACTION59chain 'S' and (resid 188 through 219 or resid 1002)S188 - 219
73X-RAY DIFFRACTION59chain 'S' and (resid 188 through 219 or resid 1002)S1002
74X-RAY DIFFRACTION60chain 'S' and (resid 220 through 269 )S220 - 269
75X-RAY DIFFRACTION61chain 'S' and (resid 270 through 327 )S270 - 327
76X-RAY DIFFRACTION62chain 'S' and (resid 328 through 382 )S328 - 382
77X-RAY DIFFRACTION63chain 'S' and (resid 383 through 430 )S383 - 430
78X-RAY DIFFRACTION64chain 'T' and (resid 1 through 34 )T1 - 34
79X-RAY DIFFRACTION65chain 'T' and (resid 35 through 117 or resid 1001)T35 - 117
80X-RAY DIFFRACTION65chain 'T' and (resid 35 through 117 or resid 1001)T1001
81X-RAY DIFFRACTION66chain 'T' and (resid 118 through 136 )T118 - 136
82X-RAY DIFFRACTION67chain 'T' and (resid 137 through 157 )T137 - 157
83X-RAY DIFFRACTION68chain 'T' and (resid 158 through 256 )T158 - 256
84X-RAY DIFFRACTION69chain 'U' and (resid 9 through 76 )U9 - 76
85X-RAY DIFFRACTION70chain 'U' and (resid 77 through 187 or resid 1001)U77 - 187
86X-RAY DIFFRACTION70chain 'U' and (resid 77 through 187 or resid 1001)U1001
87X-RAY DIFFRACTION71chain 'W' and (resid 3 through 33 )W3 - 33
88X-RAY DIFFRACTION72chain 'W' and (resid 34 through 67 )W34 - 67
89X-RAY DIFFRACTION73chain 'W' and (resid 68 through 118 or resid 1001 )W68 - 118
90X-RAY DIFFRACTION73chain 'W' and (resid 68 through 118 or resid 1001 )W1001
91X-RAY DIFFRACTION74chain 'W' and (resid 119 through 269 or resid 1002)W119 - 269
92X-RAY DIFFRACTION74chain 'W' and (resid 119 through 269 or resid 1002)W1002
93X-RAY DIFFRACTION75chain 'W' and (resid 270 through 327 )W270 - 327
94X-RAY DIFFRACTION76chain 'W' and (resid 328 through 360 )W328 - 360
95X-RAY DIFFRACTION77chain 'W' and (resid 361 through 430 )W361 - 430
96X-RAY DIFFRACTION78chain 'X' and (resid 1 through 34 )X1 - 34
97X-RAY DIFFRACTION79chain 'X' and (resid 35 through 59 or resid 1001 )X35 - 59
98X-RAY DIFFRACTION79chain 'X' and (resid 35 through 59 or resid 1001 )X1001
99X-RAY DIFFRACTION80chain 'X' and (resid 60 through 79 )X60 - 79
100X-RAY DIFFRACTION81chain 'X' and (resid 80 through 222 )X80 - 222
101X-RAY DIFFRACTION82chain 'X' and (resid 223 through 256 )X223 - 256
102X-RAY DIFFRACTION83chain 'Y' and (resid 9 through 38 )Y9 - 38
103X-RAY DIFFRACTION84chain 'Y' and (resid 39 through 53 )Y39 - 53
104X-RAY DIFFRACTION85chain 'Y' and (resid 54 through 69 )Y54 - 69
105X-RAY DIFFRACTION86chain 'Y' and (resid 70 through 78 )Y70 - 78
106X-RAY DIFFRACTION87chain 'Y' and (resid 79 through 114 )Y79 - 114
107X-RAY DIFFRACTION88chain 'Y' and (resid 115 through 153 or resid 1001)Y115 - 153
108X-RAY DIFFRACTION88chain 'Y' and (resid 115 through 153 or resid 1001)Y1001
109X-RAY DIFFRACTION89chain 'Y' and (resid 154 through 166 )Y154 - 166
110X-RAY DIFFRACTION90chain 'Y' and (resid 167 through 187 )Y167 - 187

+
About Yorodumi

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbjlvh1.pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jan 31, 2019. EMDB accession codes are about to change! (news from PDBe EMDB page)

EMDB accession codes are about to change! (news from PDBe EMDB page)

  • The allocation of 4 digits for EMDB accession codes will soon come to an end. Whilst these codes will remain in use, new EMDB accession codes will include an additional digit and will expand incrementally as the available range of codes is exhausted. The current 4-digit format prefixed with “EMD-” (i.e. EMD-XXXX) will advance to a 5-digit format (i.e. EMD-XXXXX), and so on. It is currently estimated that the 4-digit codes will be depleted around Spring 2019, at which point the 5-digit format will come into force.
  • The EM Navigator/Yorodumi systems omit the EMD- prefix.

Related info.:Q: What is EMD? / ID/Accession-code notation in Yorodumi/EM Navigator

External links:EMDB Accession Codes are Changing Soon! / Contact to PDBj

+
Jul 12, 2017. Major update of PDB

Major update of PDB

  • wwPDB released updated PDB data conforming to the new PDBx/mmCIF dictionary.
  • This is a major update changing the version number from 4 to 5, and with Remediation, in which all the entries are updated.
  • In this update, many items about electron microscopy experimental information are reorganized (e.g. em_software).
  • Now, EM Navigator and Yorodumi are based on the updated data.

External links:wwPDB Remediation / Enriched Model Files Conforming to OneDep Data Standards Now Available in the PDB FTP Archive

-
Yorodumi

Thousand views of thousand structures

  • Yorodumi is a browser for structure data from EMDB, PDB, SASBDB, etc.
  • This page is also the successor to EM Navigator detail page, and also detail information page/front-end page for Omokage search.
  • The word "yorodu" (or yorozu) is an old Japanese word meaning "ten thousand". "mi" (miru) is to see.

Related info.:EMDB / PDB / SASBDB / Comparison of 3 databanks / Yorodumi Search / Aug 31, 2016. New EM Navigator & Yorodumi / Yorodumi Papers / Jmol/JSmol / Function and homology information / Changes in new EM Navigator and Yorodumi

Read more