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Open data
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Basic information
Entry | Database: PDB / ID: 6jwc | ||||||
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Title | Mouse antibody 2B5 Fab in complex with PEG | ||||||
![]() | (Immunoglobulin ...) x 2 | ||||||
![]() | IMMUNE SYSTEM / antibody Fab / influenza hemagglutinin / complex structure / specific binding | ||||||
Function / homology | Immunoglobulins / Immunoglobulin-like / Sandwich / Mainly Beta / 1,4,7,10,13,16-HEXAOXACYCLOOCTADECANE / DI(HYDROXYETHYL)ETHER![]() | ||||||
Biological species | ![]() ![]() | ||||||
Method | ![]() ![]() ![]() | ||||||
![]() | Lee, C.C. / Ko, T.P. / Su, Y.C. / Lin, L.L. / Roffler, S.R. / Wang, A.H.J. | ||||||
Funding support | ![]()
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![]() | ![]() Title: Structural basis of polyethylene glycol recognition by antibody. Authors: Lee, C.C. / Su, Y.C. / Ko, T.P. / Lin, L.L. / Yang, C.Y. / Chang, S.S. / Roffler, S.R. / Wang, A.H. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 112.3 KB | Display | ![]() |
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PDB format | ![]() | 83 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 1.4 MB | Display | ![]() |
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Full document | ![]() | 1.4 MB | Display | |
Data in XML | ![]() | 22.3 KB | Display | |
Data in CIF | ![]() | 32.7 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Related structure data | ![]() 6jp7C ![]() 6ju0SC S: Starting model for refinement C: citing same article ( |
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Similar structure data |
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Links
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Assembly
Deposited unit | ![]()
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1 |
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Unit cell |
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Components on special symmetry positions |
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Components
-Antibody , 2 types, 2 molecules HL
#1: Antibody | Mass: 23879.707 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() ![]() |
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#2: Antibody | Mass: 23570.080 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() ![]() |
-Non-polymers , 5 types, 399 molecules ![](data/chem/img/SO4.gif)
![](data/chem/img/12P.gif)
![](data/chem/img/O4B.gif)
![](data/chem/img/PEG.gif)
![](data/chem/img/HOH.gif)
![](data/chem/img/12P.gif)
![](data/chem/img/O4B.gif)
![](data/chem/img/PEG.gif)
![](data/chem/img/HOH.gif)
#3: Chemical | ChemComp-SO4 / #4: Chemical | ChemComp-12P / | #5: Chemical | ChemComp-O4B / #6: Chemical | ChemComp-PEG / | #7: Water | ChemComp-HOH / | |
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-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 2.55 Å3/Da / Density % sol: 51.76 % |
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-Data collection
Diffraction | Mean temperature: 100 K / Serial crystal experiment: N |
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Diffraction source | Source: ![]() ![]() ![]() |
Detector | Type: RAYONIX MX300HE / Detector: CCD / Date: Sep 5, 2014 |
Radiation wavelength | Wavelength: 1 Å / Relative weight: 1 |
Reflection | Resolution: 2.3→20 Å / Num. obs: 21952 / % possible obs: 99.9 % / Redundancy: 7 % / CC1/2: 0.954 / Rpim(I) all: 0.03 / Net I/σ(I): 25.3 |
Reflection shell | Resolution: 2.3→2.38 Å / Redundancy: 7 % / Mean I/σ(I) obs: 2.8 / Num. unique obs: 2123 / CC1/2: 0.808 / Rpim(I) all: 0.296 / % possible all: 100 |
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Processing
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Refinement | Method to determine structure: ![]() Starting model: 6JU0 Resolution: 2.297→19.886 Å / SU ML: 0.29 / σ(F): 1.34 / Phase error: 22.25 / Stereochemistry target values: ML
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Solvent computation | Shrinkage radii: 0.9 Å / VDW probe radii: 1.11 Å / Solvent model: FLAT BULK SOLVENT MODEL | ||||||||||||||||||||||||
Refinement step | Cycle: LAST / Resolution: 2.297→19.886 Å
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Refine LS restraints |
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LS refinement shell | Resolution: 2.3→2.4015 Å
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