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Open data
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Basic information
Entry | Database: PDB / ID: 6jp7 | ||||||
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Title | Human antibody 32D6 Fab in complex with PEG | ||||||
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![]() | VIRAL PROTEIN/IMMUNE SYSTEM / antibody Fab / influenza hemagglutinin / complex structure / specific binding / VIRAL PROTEIN-IMMUNE SYSTEM complex | ||||||
Function / homology | Immunoglobulins / Immunoglobulin-like / Sandwich / Mainly Beta / Chem-3FX![]() | ||||||
Biological species | ![]() | ||||||
Method | ![]() ![]() ![]() | ||||||
![]() | Lee, C.C. / Ko, T.P. / Lin, L.L. / Wang, A.H.J. | ||||||
Funding support | ![]()
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![]() | ![]() Title: Structural basis of polyethylene glycol recognition by antibody. Authors: Lee, C.C. / Su, Y.C. / Ko, T.P. / Lin, L.L. / Yang, C.Y. / Chang, S.S. / Roffler, S.R. / Wang, A.H. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 117.8 KB | Display | ![]() |
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PDB format | ![]() | 87.9 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 854.3 KB | Display | ![]() |
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Full document | ![]() | 855.9 KB | Display | |
Data in XML | ![]() | 24.7 KB | Display | |
Data in CIF | ![]() | 37.7 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Related structure data | ![]() 6ju0C ![]() 6jwcC ![]() 6a4kS S: Starting model for refinement C: citing same article ( |
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Similar structure data |
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Links
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Assembly
Deposited unit | ![]()
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Unit cell |
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Components on special symmetry positions |
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Components
#1: Antibody | Mass: 25556.469 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() ![]() | ||||
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#2: Antibody | Mass: 23007.432 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() ![]() | ||||
#3: Chemical | #4: Chemical | #5: Water | ChemComp-HOH / | |
-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 3.08 Å3/Da / Density % sol: 60.12 % |
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Crystal grow | Temperature: 291 K / Method: vapor diffusion, sitting drop / Details: PEG 600, CAPSO |
-Data collection
Diffraction | Mean temperature: 100 K / Serial crystal experiment: N |
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Diffraction source | Source: ![]() ![]() ![]() |
Detector | Type: RAYONIX MX300-HS / Detector: CCD / Date: Jun 12, 2016 |
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 1 Å / Relative weight: 1 |
Reflection | Resolution: 1.91→30 Å / Num. obs: 47075 / % possible obs: 98.5 % / Redundancy: 3.5 % / Rmerge(I) obs: 0.067 / Net I/σ(I): 16.46 |
Reflection shell | Resolution: 1.91→1.98 Å / Redundancy: 3.2 % / Rmerge(I) obs: 0.347 / Mean I/σ(I) obs: 2.1 / Num. unique obs: 4515 / % possible all: 96.4 |
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Processing
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Refinement | Method to determine structure: ![]() Starting model: 6A4K Resolution: 1.909→29.177 Å / SU ML: 0.19 / Cross valid method: NONE / σ(F): 1.38 / Phase error: 20.3 / Stereochemistry target values: ML
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Solvent computation | Shrinkage radii: 0.9 Å / VDW probe radii: 1.11 Å / Solvent model: FLAT BULK SOLVENT MODEL | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement step | Cycle: LAST / Resolution: 1.909→29.177 Å
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Refine LS restraints |
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LS refinement shell |
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