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Open data
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Basic information
Entry | Database: PDB / ID: 6ipo | ||||||
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Title | Ferritin mutant C90A/C102A/C130A/D144C | ||||||
![]() | Ferritin heavy chain | ||||||
![]() | OXIDOREDUCTASE / Ferritin / Disulfide bond / 48-mer nanocage | ||||||
Function / homology | ![]() iron ion sequestering activity / : / autolysosome / Scavenging by Class A Receptors / Golgi Associated Vesicle Biogenesis / ferroxidase / intracellular sequestering of iron ion / ferroxidase activity / negative regulation of fibroblast proliferation / ferric iron binding ...iron ion sequestering activity / : / autolysosome / Scavenging by Class A Receptors / Golgi Associated Vesicle Biogenesis / ferroxidase / intracellular sequestering of iron ion / ferroxidase activity / negative regulation of fibroblast proliferation / ferric iron binding / Iron uptake and transport / ferrous iron binding / tertiary granule lumen / iron ion transport / intracellular iron ion homeostasis / ficolin-1-rich granule lumen / iron ion binding / immune response / negative regulation of cell population proliferation / Neutrophil degranulation / extracellular exosome / extracellular region / identical protein binding / membrane / nucleus / cytoplasm / cytosol Similarity search - Function | ||||||
Biological species | ![]() | ||||||
Method | ![]() ![]() ![]() | ||||||
![]() | Zang, J. / Chen, H. / Zhang, X. / Zhao, G. | ||||||
Funding support | ![]()
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![]() | ![]() Title: Disulfide-mediated conversion of 8-mer bowl-like protein architecture into three different nanocages. Authors: Zang, J. / Chen, H. / Zhang, X. / Zhang, C. / Guo, J. / Du, M. / Zhao, G. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 77.3 KB | Display | ![]() |
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PDB format | ![]() | 58.3 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 439.2 KB | Display | ![]() |
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Full document | ![]() | 442.6 KB | Display | |
Data in XML | ![]() | 12.8 KB | Display | |
Data in CIF | ![]() | 16.6 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Related structure data | ![]() 6ipcC ![]() 6ippC ![]() 6ipqC ![]() 6j7gC ![]() 2fhaS S: Starting model for refinement C: citing same article ( |
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Similar structure data |
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Links
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Assembly
Deposited unit | ![]()
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Unit cell |
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Components on special symmetry positions |
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Components
#1: Protein | Mass: 20345.584 Da / Num. of mol.: 2 / Mutation: C90A/C102A/C130A/D144C Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() ![]() #2: Chemical | #3: Water | ChemComp-HOH / | |
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-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 3.67 Å3/Da / Density % sol: 66.49 % |
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Crystal grow | Temperature: 293.15 K / Method: evaporation / Details: magnesium chloride, PEG 400, TRIS |
-Data collection
Diffraction | Mean temperature: 80 K / Serial crystal experiment: N |
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Diffraction source | Source: ![]() ![]() ![]() |
Detector | Type: DECTRIS PILATUS3 S 6M / Detector: PIXEL / Date: May 13, 2018 |
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 0.9779 Å / Relative weight: 1 |
Reflection | Resolution: 2.699→48.05 Å / Num. obs: 11867 / % possible obs: 100 % / Redundancy: 12.3 % / CC1/2: 0.999 / Rmerge(I) obs: 0.1914 / Net I/σ(I): 8.1 |
Reflection shell | Resolution: 2.796→2.998 Å |
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Processing
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Refinement | Method to determine structure: ![]() Starting model: 2FHA Resolution: 2.998→48.05 Å / SU ML: 0.34 / Cross valid method: NONE / σ(F): 1.38 / Phase error: 21.95
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Solvent computation | Shrinkage radii: 0.9 Å / VDW probe radii: 1.11 Å | |||||||||||||||||||||||||||||||||||
Refinement step | Cycle: LAST / Resolution: 2.998→48.05 Å
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Refine LS restraints |
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LS refinement shell |
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