- PDB-6hoh: Structure of VPS34 LIR motif (S249E) bound to GABARAP -
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Basic information
Entry
Database: PDB / ID: 6hoh
Title
Structure of VPS34 LIR motif (S249E) bound to GABARAP
Components
Phosphatidylinositol 3-kinase catalytic subunit type 3,Gamma-aminobutyric acid receptor-associated protein
Keywords
SIGNALING PROTEIN / Autophagy / ATG8 / LIR
Function / homology
Function and homology information
positive regulation of protein lipidation / postsynaptic endosome / Toll Like Receptor 9 (TLR9) Cascade / Synthesis of PIPs at the late endosome membrane / phosphatidylinositol 3-kinase complex, class III / Synthesis of PIPs at the early endosome membrane / phosphatidylinositol 3-kinase complex, class III, type II / phosphatidylinositol 3-kinase complex, class III, type I / positive regulation of protein K48-linked ubiquitination / host-mediated activation of viral genome replication ...positive regulation of protein lipidation / postsynaptic endosome / Toll Like Receptor 9 (TLR9) Cascade / Synthesis of PIPs at the late endosome membrane / phosphatidylinositol 3-kinase complex, class III / Synthesis of PIPs at the early endosome membrane / phosphatidylinositol 3-kinase complex, class III, type II / phosphatidylinositol 3-kinase complex, class III, type I / positive regulation of protein K48-linked ubiquitination / host-mediated activation of viral genome replication / presynaptic endosome / regulation of Rac protein signal transduction / Synthesis of PIPs at the Golgi membrane / phosphatidylinositol kinase activity / response to L-leucine / early endosome to late endosome transport / protein localization to phagophore assembly site / protein targeting to lysosome / endosome organization / GABA receptor binding / pexophagy / phosphatidylethanolamine binding / phagophore assembly site / Translation of Replicase and Assembly of the Replication Transcription Complex / phosphatidylinositol-3-phosphate biosynthetic process / TBC/RABGAPs / cellular response to nitrogen starvation / microtubule associated complex / phosphatidylinositol 3-kinase / 1-phosphatidylinositol-3-kinase activity / Macroautophagy / phosphatidylinositol-mediated signaling / regulation of neurotransmitter receptor localization to postsynaptic specialization membrane / phosphatidylinositol phosphate biosynthetic process / autolysosome / autophagosome membrane / PI3K Cascade / extrinsic apoptotic signaling pathway via death domain receptors / RHO GTPases Activate NADPH Oxidases / axoneme / synaptic vesicle endocytosis / autophagosome assembly / autophagosome maturation / regulation of macroautophagy / beta-tubulin binding / protein targeting / smooth endoplasmic reticulum / cellular response to glucose starvation / mitophagy / sperm midpiece / autophagosome / regulation of cytokinesis / Antigen Presentation: Folding, assembly and peptide loading of class I MHC / macroautophagy / phosphatidylinositol 3-kinase/protein kinase B signal transduction / GABA-ergic synapse / protein processing / autophagy / microtubule cytoskeleton organization / phagocytic vesicle membrane / endocytosis / peroxisome / late endosome / positive regulation of proteasomal ubiquitin-dependent protein catabolic process / protein transport / actin cytoskeleton / Translation of Replicase and Assembly of the Replication Transcription Complex / midbody / cytoplasmic vesicle / microtubule binding / chemical synaptic transmission / microtubule / lysosome / protein kinase activity / endosome / regulation of autophagy / Golgi membrane / cell division / intracellular membrane-bounded organelle / ubiquitin protein ligase binding / SARS-CoV-2 activates/modulates innate and adaptive immune responses / glutamatergic synapse / ATP binding / membrane / plasma membrane / cytosol / cytoplasm Similarity search - Function
B: Phosphatidylinositol 3-kinase catalytic subunit type 3,Gamma-aminobutyric acid receptor-associated protein C: Phosphatidylinositol 3-kinase catalytic subunit type 3,Gamma-aminobutyric acid receptor-associated protein
D: Phosphatidylinositol 3-kinase catalytic subunit type 3,Gamma-aminobutyric acid receptor-associated protein