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Yorodumi- PDB-6byz: Structure of Cysteine-free Human Insulin-Degrading Enzyme in comp... -
+Open data
-Basic information
Entry | Database: PDB / ID: 6byz | ||||||
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Title | Structure of Cysteine-free Human Insulin-Degrading Enzyme in complex with Substrate-selective Macrocyclic Inhibitor 37 | ||||||
Components |
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Keywords | HYDROLASE/INHIBITOR / Insulin / Glucagon / Diabetes / Exo-site / HYDROLASE / HYDROLASE-INHIBITOR complex | ||||||
Function / homology | Function and homology information insulysin / ubiquitin recycling / insulin catabolic process / insulin metabolic process / amyloid-beta clearance by cellular catabolic process / hormone catabolic process / bradykinin catabolic process / insulin binding / regulation of aerobic respiration / peptide catabolic process ...insulysin / ubiquitin recycling / insulin catabolic process / insulin metabolic process / amyloid-beta clearance by cellular catabolic process / hormone catabolic process / bradykinin catabolic process / insulin binding / regulation of aerobic respiration / peptide catabolic process / amyloid-beta clearance / peroxisomal matrix / amyloid-beta metabolic process / Insulin receptor recycling / proteolysis involved in protein catabolic process / Peroxisomal protein import / peptide binding / protein catabolic process / antigen processing and presentation of endogenous peptide antigen via MHC class I / metalloendopeptidase activity / positive regulation of protein catabolic process / positive regulation of protein binding / peroxisome / insulin receptor signaling pathway / virus receptor activity / basolateral plasma membrane / endopeptidase activity / Ub-specific processing proteases / external side of plasma membrane / cell surface / protein homodimerization activity / mitochondrion / proteolysis / extracellular space / extracellular exosome / zinc ion binding / ATP binding / identical protein binding / nucleus / cytosol / cytoplasm Similarity search - Function | ||||||
Biological species | Homo sapiens (human) Escherichia coli BL21 (bacteria) | ||||||
Method | X-RAY DIFFRACTION / SYNCHROTRON / MOLECULAR REPLACEMENT / Resolution: 2.95624845742 Å | ||||||
Authors | Tan, G.A. / Seeliger, M.A. / Maianti, J.P. / Liu, D.R. | ||||||
Citation | Journal: Nat.Chem.Biol. / Year: 2019 Title: Substrate-selective inhibitors that reprogram the activity of insulin-degrading enzyme. Authors: Maianti, J.P. / Tan, G.A. / Vetere, A. / Welsh, A.J. / Wagner, B.K. / Seeliger, M.A. / Liu, D.R. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 6byz.cif.gz | 956.3 KB | Display | PDBx/mmCIF format |
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PDB format | pdb6byz.ent.gz | 657.5 KB | Display | PDB format |
PDBx/mmJSON format | 6byz.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Summary document | 6byz_validation.pdf.gz | 1020.2 KB | Display | wwPDB validaton report |
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Full document | 6byz_full_validation.pdf.gz | 1 MB | Display | |
Data in XML | 6byz_validation.xml.gz | 72 KB | Display | |
Data in CIF | 6byz_validation.cif.gz | 98 KB | Display | |
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/by/6byz ftp://data.pdbj.org/pub/pdb/validation_reports/by/6byz | HTTPS FTP |
-Related structure data
Related structure data | 6edsC 6mq3C 4lteS S: Starting model for refinement C: citing same article (ref.) |
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Similar structure data |
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-Assembly
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Noncrystallographic symmetry (NCS) | NCS domain:
NCS domain segments:
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