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Yorodumi- PDB-6byz: Structure of Cysteine-free Human Insulin-Degrading Enzyme in comp... -
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Basic information
| Entry | Database: PDB / ID: 6byz | ||||||
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| Title | Structure of Cysteine-free Human Insulin-Degrading Enzyme in complex with Substrate-selective Macrocyclic Inhibitor 37 | ||||||
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Keywords | HYDROLASE/INHIBITOR / Insulin / Glucagon / Diabetes / Exo-site / HYDROLASE / HYDROLASE-INHIBITOR complex | ||||||
| Function / homology | Function and homology informationinsulysin / beta-endorphin binding / ubiquitin recycling / insulin catabolic process / insulin metabolic process / amyloid-beta clearance by cellular catabolic process / hormone catabolic process / bradykinin catabolic process / cytosolic proteasome complex / insulin binding ...insulysin / beta-endorphin binding / ubiquitin recycling / insulin catabolic process / insulin metabolic process / amyloid-beta clearance by cellular catabolic process / hormone catabolic process / bradykinin catabolic process / cytosolic proteasome complex / insulin binding / regulation of aerobic respiration / peptide catabolic process / amyloid-beta clearance / peroxisomal matrix / amyloid-beta metabolic process / positive regulation of protein binding / Insulin receptor recycling / negative regulation of proteolysis / peptide binding / proteolysis involved in protein catabolic process / Peroxisomal protein import / protein catabolic process / antigen processing and presentation of endogenous peptide antigen via MHC class I / metalloendopeptidase activity / positive regulation of protein catabolic process / insulin receptor signaling pathway / peroxisome / amyloid-beta binding / virus receptor activity / endopeptidase activity / basolateral plasma membrane / Ub-specific processing proteases / external side of plasma membrane / protein-containing complex binding / cell surface / protein homodimerization activity / ATP hydrolysis activity / mitochondrion / proteolysis / extracellular space / extracellular exosome / zinc ion binding / ATP binding / identical protein binding / nucleus / cytosol / cytoplasm Similarity search - Function | ||||||
| Biological species | Homo sapiens (human)![]() | ||||||
| Method | X-RAY DIFFRACTION / SYNCHROTRON / MOLECULAR REPLACEMENT / Resolution: 2.95624845742 Å | ||||||
Authors | Tan, G.A. / Seeliger, M.A. / Maianti, J.P. / Liu, D.R. | ||||||
Citation | Journal: Nat.Chem.Biol. / Year: 2019Title: Substrate-selective inhibitors that reprogram the activity of insulin-degrading enzyme. Authors: Maianti, J.P. / Tan, G.A. / Vetere, A. / Welsh, A.J. / Wagner, B.K. / Seeliger, M.A. / Liu, D.R. | ||||||
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Structure visualization
| Structure viewer | Molecule: Molmil Jmol/JSmol |
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Downloads & links
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Download
| PDBx/mmCIF format | 6byz.cif.gz | 956.3 KB | Display | PDBx/mmCIF format |
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| PDB format | pdb6byz.ent.gz | 657.5 KB | Display | PDB format |
| PDBx/mmJSON format | 6byz.json.gz | Tree view | PDBx/mmJSON format | |
| Others | Other downloads |
-Validation report
| Summary document | 6byz_validation.pdf.gz | 1020.2 KB | Display | wwPDB validaton report |
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| Full document | 6byz_full_validation.pdf.gz | 1 MB | Display | |
| Data in XML | 6byz_validation.xml.gz | 72 KB | Display | |
| Data in CIF | 6byz_validation.cif.gz | 98 KB | Display | |
| Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/by/6byz ftp://data.pdbj.org/pub/pdb/validation_reports/by/6byz | HTTPS FTP |
-Related structure data
| Related structure data | ![]() 6edsC ![]() 6mq3C ![]() 4lteS S: Starting model for refinement C: citing same article ( |
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| Similar structure data |
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Assembly
| Deposited unit | ![]()
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| Noncrystallographic symmetry (NCS) | NCS domain:
NCS domain segments:
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Homo sapiens (human)
X-RAY DIFFRACTION
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