+Open data
-Basic information
Entry | Database: PDB / ID: 5wog | ||||||
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Title | Human Hemoglobin immersed in Liquid Oxygen for 1 minute | ||||||
Components |
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Keywords | OXYGEN BINDING / Hemoglobin / Oxygen | ||||||
Function / homology | Function and homology information nitric oxide transport / hemoglobin binding / hemoglobin alpha binding / haptoglobin binding / haptoglobin-hemoglobin complex / renal absorption / organic acid binding / hemoglobin complex / oxygen transport / Scavenging of heme from plasma ...nitric oxide transport / hemoglobin binding / hemoglobin alpha binding / haptoglobin binding / haptoglobin-hemoglobin complex / renal absorption / organic acid binding / hemoglobin complex / oxygen transport / Scavenging of heme from plasma / endocytic vesicle lumen / blood vessel diameter maintenance / hydrogen peroxide catabolic process / oxygen carrier activity / Late endosomal microautophagy / Heme signaling / carbon dioxide transport / response to hydrogen peroxide / Erythrocytes take up oxygen and release carbon dioxide / Erythrocytes take up carbon dioxide and release oxygen / Cytoprotection by HMOX1 / regulation of blood pressure / oxygen binding / platelet aggregation / Chaperone Mediated Autophagy / peroxidase activity / positive regulation of nitric oxide biosynthetic process / tertiary granule lumen / Factors involved in megakaryocyte development and platelet production / ficolin-1-rich granule lumen / blood microparticle / iron ion binding / heme binding / Neutrophil degranulation / extracellular space / extracellular exosome / extracellular region / membrane / metal ion binding / cytosol Similarity search - Function | ||||||
Biological species | Homo sapiens (human) | ||||||
Method | X-RAY DIFFRACTION / SYNCHROTRON / MOLECULAR REPLACEMENT / Resolution: 1.54 Å | ||||||
Authors | Gumpper, R.H. / Terrell, J.R. / Luo, M. | ||||||
Citation | Journal: Biochem. Biophys. Res. Commun. / Year: 2018 Title: Hemoglobin crystals immersed in liquid oxygen reveal diffusion channels. Authors: Terrell, J.R. / Gumpper, R.H. / Luo, M. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 5wog.cif.gz | 144.6 KB | Display | PDBx/mmCIF format |
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PDB format | pdb5wog.ent.gz | 111.5 KB | Display | PDB format |
PDBx/mmJSON format | 5wog.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Summary document | 5wog_validation.pdf.gz | 1.7 MB | Display | wwPDB validaton report |
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Full document | 5wog_full_validation.pdf.gz | 1.7 MB | Display | |
Data in XML | 5wog_validation.xml.gz | 33.1 KB | Display | |
Data in CIF | 5wog_validation.cif.gz | 47.9 KB | Display | |
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/wo/5wog ftp://data.pdbj.org/pub/pdb/validation_reports/wo/5wog | HTTPS FTP |
-Related structure data
Related structure data | 5wohC 6bb5C 2dn1S S: Starting model for refinement C: citing same article (ref.) |
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Similar structure data |
-Links
-Assembly
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Noncrystallographic symmetry (NCS) | NCS domain:
NCS domain segments:
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