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- PDB-5j91: Structure of the Wild-type 70S E coli ribosome bound to Tigecycline -

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Basic information

Entry
Database: PDB / ID: 5j91
TitleStructure of the Wild-type 70S E coli ribosome bound to Tigecycline
Components
  • (23S rRNA23S ribosomal RNA) x 2
  • (30S ribosomal protein ...) x 20
  • (50S ribosomal protein ...) x 31
  • 16S rRNA
  • 5S rRNA5S ribosomal RNA
Keywordsribosome/antibiotic / Tigecycline / ribosome / escherichia coli / ribosome-inhibitor complex / ribosome-antibiotic complex
Function / homology
Function and homology information


stringent response / mRNA base-pairing translational repressor activity / ornithine decarboxylase inhibitor activity / misfolded RNA binding / transcription antitermination factor activity, RNA binding / Group I intron splicing / RNA folding / transcriptional attenuation / endoribonuclease inhibitor activity / RNA-binding transcription regulator activity ...stringent response / mRNA base-pairing translational repressor activity / ornithine decarboxylase inhibitor activity / misfolded RNA binding / transcription antitermination factor activity, RNA binding / Group I intron splicing / RNA folding / transcriptional attenuation / endoribonuclease inhibitor activity / RNA-binding transcription regulator activity / positive regulation of ribosome biogenesis / negative regulation of cytoplasmic translation / translational termination / DnaA-L2 complex / four-way junction DNA binding / translation repressor activity / negative regulation of translational initiation / negative regulation of DNA-templated DNA replication initiation / regulation of mRNA stability / ribosome assembly / mRNA regulatory element binding translation repressor activity / response to reactive oxygen species / assembly of large subunit precursor of preribosome / transcription elongation factor complex / positive regulation of RNA splicing / DNA endonuclease activity / : / cytosolic ribosome assembly / regulation of DNA-templated transcription elongation / transcription antitermination / regulation of cell growth / maintenance of translational fidelity / DNA-templated transcription termination / response to radiation / mRNA 5'-UTR binding / ribosomal small subunit biogenesis / small ribosomal subunit rRNA binding / ribosomal small subunit assembly / ribosomal large subunit assembly / cytosolic small ribosomal subunit / large ribosomal subunit rRNA binding / ribosome binding / large ribosomal subunit / ribosome biogenesis / regulation of translation / small ribosomal subunit / 5S rRNA binding / cytoplasmic translation / cytosolic large ribosomal subunit / transferase activity / negative regulation of translation / tRNA binding / molecular adaptor activity / rRNA binding / ribosome / structural constituent of ribosome / translation / response to antibiotic / mRNA binding / negative regulation of DNA-templated transcription / DNA binding / RNA binding / zinc ion binding / membrane / cytosol / cytoplasm
Similarity search - Function
Ribosomal protein L10, eubacterial, conserved site / Ribosomal protein L10 signature. / Ribosomal protein L10 / : / Ribosomal protein S21, conserved site / Ribosomal protein S21 signature. / Ribosomal protein L25, short-form / Ribosomal protein S14, bacterial/plastid / Ribosomal protein L11, bacterial-type / Ribosomal protein S21 superfamily ...Ribosomal protein L10, eubacterial, conserved site / Ribosomal protein L10 signature. / Ribosomal protein L10 / : / Ribosomal protein S21, conserved site / Ribosomal protein S21 signature. / Ribosomal protein L25, short-form / Ribosomal protein S14, bacterial/plastid / Ribosomal protein L11, bacterial-type / Ribosomal protein S21 superfamily / Ribosomal protein S21 / Ribosomal protein S16, conserved site / Ribosomal protein S16 signature. / Ribosomal protein S21 / Ribosomal protein L11, conserved site / Ribosomal protein L10-like domain superfamily / Ribosomal protein L21, conserved site / Ribosomal protein L21 signature. / Ribosomal protein L10P / Ribosomal protein L10 / Ribosomal protein L11 signature. / Ribosomal protein L16 signature 1. / : / Ribosomal protein L6, conserved site / Ribosomal protein L6 signature 1. / Ribosomal protein L16, conserved site / Ribosomal protein L16 signature 2. / Ribosomal protein L11, N-terminal / Ribosomal protein L17 signature. / Ribosomal protein L9 signature. / Ribosomal protein L9, bacteria/chloroplast / Ribosomal protein L9, C-terminal / Ribosomal protein L9, C-terminal domain / Ribosomal protein L9, C-terminal domain superfamily / Ribosomal protein L11/L12 / Ribosomal protein L11, C-terminal / Ribosomal protein L11, C-terminal domain superfamily / Ribosomal protein L11/L12, N-terminal domain superfamily / Ribosomal protein L11/L12 / Ribosomal protein L11, N-terminal domain / Ribosomal protein L11, RNA binding domain / Ribosomal L25p family / Ribosomal protein L25 / Ribosomal protein L28/L24 superfamily / Ribosomal protein L36 signature. / Ribosomal protein L25/Gln-tRNA synthetase, N-terminal / Ribosomal protein L32p, bacterial type / Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain superfamily / Ribosomal protein L9, N-terminal domain superfamily / Ribosomal protein L9 / Ribosomal protein L9, N-terminal / Ribosomal protein L9, N-terminal domain / Ribosomal protein L28 / Ribosomal protein L35, conserved site / Ribosomal protein L35 signature. / Ribosomal protein L33, conserved site / Ribosomal protein L33 signature. / Ribosomal protein L35, non-mitochondrial / Ribosomal protein L5, bacterial-type / Ribosomal protein L6, bacterial-type / Ribosomal protein L18, bacterial-type / Ribosomal protein L19, conserved site / Ribosomal protein L19 signature. / Ribosomal protein L36 / Ribosomal protein L36 superfamily / Ribosomal protein L36 / Ribosomal protein L9/RNase H1, N-terminal / Ribosomal protein L20 signature. / Ribosomal protein S3, bacterial-type / Ribosomal protein L27, conserved site / Ribosomal protein S6, conserved site / Ribosomal protein L27 signature. / Ribosomal protein S6 signature. / Ribosomal protein S19, bacterial-type / Ribosomal protein S7, bacterial/organellar-type / Ribosomal protein S11, bacterial-type / Ribosomal protein S13, bacterial-type / Ribosomal protein S20 / Ribosomal protein S20 superfamily / Ribosomal protein S20 / Ribosomal protein S9, bacterial/plastid / Ribosomal protein L14P, bacterial-type / Ribosomal protein S4, bacterial-type / Ribosomal protein L34, conserved site / Ribosomal protein L34 signature. / 30S ribosomal protein S17 / Ribosomal protein S5, bacterial-type / Ribosomal protein L22, bacterial/chloroplast-type / Ribosomal protein S6, plastid/chloroplast / Ribosomal protein L35 / Ribosomal protein L35 superfamily / Ribosomal protein L2, bacterial/organellar-type / Ribosomal protein L35 / Ribosomal protein S2, bacteria/mitochondria/plastid / Ribosomal L28 family / Ribosomal protein L33 / Ribosomal protein L33 / Ribosomal protein L28/L24 / Ribosomal protein L33 superfamily / :
Similarity search - Domain/homology
ACETIC ACID / GUANINE / DI(HYDROXYETHYL)ETHER / TRIETHYLENE GLYCOL / 1,4-DIAMINOBUTANE / SPERMIDINE / TIGECYCLINE / : / : / : ...ACETIC ACID / GUANINE / DI(HYDROXYETHYL)ETHER / TRIETHYLENE GLYCOL / 1,4-DIAMINOBUTANE / SPERMIDINE / TIGECYCLINE / : / : / : / : / RNA / RNA (> 10) / RNA (> 100) / RNA (> 1000) / Small ribosomal subunit protein bS6 / Small ribosomal subunit protein uS7 / Large ribosomal subunit protein uL15 / Large ribosomal subunit protein uL10 / Large ribosomal subunit protein uL11 / Large ribosomal subunit protein bL19 / Large ribosomal subunit protein bL20 / Large ribosomal subunit protein bL27 / Large ribosomal subunit protein bL28 / Large ribosomal subunit protein uL29 / Large ribosomal subunit protein bL32 / Large ribosomal subunit protein bL33 / Large ribosomal subunit protein bL34 / Large ribosomal subunit protein bL35 / Large ribosomal subunit protein bL36A / Large ribosomal subunit protein bL9 / Small ribosomal subunit protein uS10 / Small ribosomal subunit protein uS11 / Small ribosomal subunit protein uS12 / Small ribosomal subunit protein uS13 / Small ribosomal subunit protein bS16 / Small ribosomal subunit protein bS18 / Small ribosomal subunit protein uS19 / Small ribosomal subunit protein bS20 / Small ribosomal subunit protein uS2 / Small ribosomal subunit protein uS3 / Small ribosomal subunit protein uS4 / Small ribosomal subunit protein uS5 / Small ribosomal subunit protein uS8 / Small ribosomal subunit protein uS9 / Large ribosomal subunit protein uL13 / Large ribosomal subunit protein uL14 / Large ribosomal subunit protein uL16 / Large ribosomal subunit protein uL23 / Small ribosomal subunit protein uS15 / Large ribosomal subunit protein bL17 / Large ribosomal subunit protein bL21 / Large ribosomal subunit protein uL30 / Large ribosomal subunit protein uL6 / Small ribosomal subunit protein uS14 / Small ribosomal subunit protein uS17 / Large ribosomal subunit protein uL18 / Large ribosomal subunit protein uL2 / Large ribosomal subunit protein uL3 / Large ribosomal subunit protein uL24 / Large ribosomal subunit protein uL4 / Large ribosomal subunit protein uL22 / Large ribosomal subunit protein uL5 / Small ribosomal subunit protein bS21 / Large ribosomal subunit protein bL25
Similarity search - Component
Biological speciesEscherichia coli (E. coli)
Escherichia coli K-12 (bacteria)
MethodX-RAY DIFFRACTION / SYNCHROTRON / Resolution: 2.96 Å
AuthorsCocozaki, A. / Ferguson, A.
CitationJournal: Proc.Natl.Acad.Sci.USA / Year: 2016
Title: Resistance mutations generate divergent antibiotic susceptibility profiles against translation inhibitors.
Authors: Cocozaki, A.I. / Altman, R.B. / Huang, J. / Buurman, E.T. / Kazmirski, S.L. / Doig, P. / Prince, D.B. / Blanchard, S.C. / Cate, J.H. / Ferguson, A.D.
History
DepositionApr 8, 2016Deposition site: RCSB / Processing site: RCSB
Revision 1.0Jul 6, 2016Provider: repository / Type: Initial release
Revision 1.1Jul 20, 2016Group: Structure summary
Revision 1.2Aug 3, 2016Group: Database references

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Structure visualization

Structure viewerMolecule:
MolmilJmol/JSmol

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Assembly

Deposited unit
AA: 16S rRNA
AB: 30S ribosomal protein S2
AC: 30S ribosomal protein S3
AD: 30S ribosomal protein S4
AE: 30S ribosomal protein S5
AF: 30S ribosomal protein S6
AG: 30S ribosomal protein S7
AH: 30S ribosomal protein S8
AI: 30S ribosomal protein S9
AJ: 30S ribosomal protein S10
AK: 30S ribosomal protein S11
AL: 30S ribosomal protein S12
AM: 30S ribosomal protein S13
AN: 30S ribosomal protein S14
AO: 30S ribosomal protein S15
AP: 30S ribosomal protein S16
AQ: 30S ribosomal protein S17
AR: 30S ribosomal protein S18
AS: 30S ribosomal protein S19
AT: 30S ribosomal protein S20
AU: 30S ribosomal protein S21
C1: 50S ribosomal protein L32
C2: 50S ribosomal protein L33
C3: 50S ribosomal protein L34
C4: 50S ribosomal protein L35
C5: 50S ribosomal protein L36
C0: 50S ribosomal protein L30
BA: 16S rRNA
BB: 30S ribosomal protein S2
BC: 30S ribosomal protein S3
BD: 30S ribosomal protein S4
BE: 30S ribosomal protein S5
BF: 30S ribosomal protein S6
BG: 30S ribosomal protein S7
BH: 30S ribosomal protein S8
BI: 30S ribosomal protein S9
BJ: 30S ribosomal protein S10
BK: 30S ribosomal protein S11
BL: 30S ribosomal protein S12
BM: 30S ribosomal protein S13
BN: 30S ribosomal protein S14
BO: 30S ribosomal protein S15
BP: 30S ribosomal protein S16
BQ: 30S ribosomal protein S17
BR: 30S ribosomal protein S18
BS: 30S ribosomal protein S19
BT: 30S ribosomal protein S20
BU: 30S ribosomal protein S21
D1: 50S ribosomal protein L32
D2: 50S ribosomal protein L33
D3: 50S ribosomal protein L34
D4: 50S ribosomal protein L35
D5: 50S ribosomal protein L36
D0: 50S ribosomal protein L30
CB: 5S rRNA
CC: 50S ribosomal protein L2
CD: 50S ribosomal protein L3
CA: 23S rRNA
DC: 50S ribosomal protein L2
DD: 50S ribosomal protein L3
CE: 50S ribosomal protein L4
CF: 50S ribosomal protein L5
CG: 50S ribosomal protein L6
CH: 50S ribosomal protein L9
CJ: 50S ribosomal protein L11
CK: 50S ribosomal protein L13
CL: 50S ribosomal protein L14
CM: 50S ribosomal protein L15
CN: 50S ribosomal protein L16
CO: 50S ribosomal protein L17
CP: 50S ribosomal protein L18
CQ: 50S ribosomal protein L19
CR: 50S ribosomal protein L20
CS: 50S ribosomal protein L21
CT: 50S ribosomal protein L22
CU: 50S ribosomal protein L23
CV: 50S ribosomal protein L24
CW: 50S ribosomal protein L25
CX: 50S ribosomal protein L27
CY: 50S ribosomal protein L28
CZ: 50S ribosomal protein L29
DE: 50S ribosomal protein L4
DF: 50S ribosomal protein L5
DG: 50S ribosomal protein L6
DH: 50S ribosomal protein L9
DJ: 50S ribosomal protein L11
DK: 50S ribosomal protein L13
DL: 50S ribosomal protein L14
DM: 50S ribosomal protein L15
DN: 50S ribosomal protein L16
DO: 50S ribosomal protein L17
DP: 50S ribosomal protein L18
DQ: 50S ribosomal protein L19
DR: 50S ribosomal protein L20
DS: 50S ribosomal protein L21
DT: 50S ribosomal protein L22
DU: 50S ribosomal protein L23
DV: 50S ribosomal protein L24
DW: 50S ribosomal protein L25
DX: 50S ribosomal protein L27
DY: 50S ribosomal protein L28
DZ: 50S ribosomal protein L29
DI: 50S ribosomal protein L10
DB: 5S rRNA
DA: 23S rRNA
hetero molecules


Theoretical massNumber of molelcules
Total (without water)4,272,878659
Polymers4,250,908105
Non-polymers21,970554
Water139,5447746
1
AA: 16S rRNA
AB: 30S ribosomal protein S2
AC: 30S ribosomal protein S3
AD: 30S ribosomal protein S4
AE: 30S ribosomal protein S5
AF: 30S ribosomal protein S6
AG: 30S ribosomal protein S7
AH: 30S ribosomal protein S8
AI: 30S ribosomal protein S9
AJ: 30S ribosomal protein S10
AK: 30S ribosomal protein S11
AL: 30S ribosomal protein S12
AM: 30S ribosomal protein S13
AN: 30S ribosomal protein S14
AO: 30S ribosomal protein S15
AP: 30S ribosomal protein S16
AQ: 30S ribosomal protein S17
AR: 30S ribosomal protein S18
AS: 30S ribosomal protein S19
AT: 30S ribosomal protein S20
AU: 30S ribosomal protein S21
D1: 50S ribosomal protein L32
D2: 50S ribosomal protein L33
D3: 50S ribosomal protein L34
D4: 50S ribosomal protein L35
D5: 50S ribosomal protein L36
D0: 50S ribosomal protein L30
DC: 50S ribosomal protein L2
DD: 50S ribosomal protein L3
DE: 50S ribosomal protein L4
DF: 50S ribosomal protein L5
DG: 50S ribosomal protein L6
DH: 50S ribosomal protein L9
DJ: 50S ribosomal protein L11
DK: 50S ribosomal protein L13
DL: 50S ribosomal protein L14
DM: 50S ribosomal protein L15
DN: 50S ribosomal protein L16
DO: 50S ribosomal protein L17
DP: 50S ribosomal protein L18
DQ: 50S ribosomal protein L19
DR: 50S ribosomal protein L20
DS: 50S ribosomal protein L21
DT: 50S ribosomal protein L22
DU: 50S ribosomal protein L23
DV: 50S ribosomal protein L24
DW: 50S ribosomal protein L25
DX: 50S ribosomal protein L27
DY: 50S ribosomal protein L28
DZ: 50S ribosomal protein L29
DI: 50S ribosomal protein L10
DB: 5S rRNA
DA: 23S rRNA
hetero molecules


Theoretical massNumber of molelcules
Total (without water)2,148,959402
Polymers2,132,74653
Non-polymers16,213349
Water86548
TypeNameSymmetry operationNumber
identity operation1_555x,y,z1
2
C1: 50S ribosomal protein L32
C2: 50S ribosomal protein L33
C3: 50S ribosomal protein L34
C4: 50S ribosomal protein L35
C5: 50S ribosomal protein L36
C0: 50S ribosomal protein L30
BA: 16S rRNA
BB: 30S ribosomal protein S2
BC: 30S ribosomal protein S3
BD: 30S ribosomal protein S4
BE: 30S ribosomal protein S5
BF: 30S ribosomal protein S6
BG: 30S ribosomal protein S7
BH: 30S ribosomal protein S8
BI: 30S ribosomal protein S9
BJ: 30S ribosomal protein S10
BK: 30S ribosomal protein S11
BL: 30S ribosomal protein S12
BM: 30S ribosomal protein S13
BN: 30S ribosomal protein S14
BO: 30S ribosomal protein S15
BP: 30S ribosomal protein S16
BQ: 30S ribosomal protein S17
BR: 30S ribosomal protein S18
BS: 30S ribosomal protein S19
BT: 30S ribosomal protein S20
BU: 30S ribosomal protein S21
CB: 5S rRNA
CC: 50S ribosomal protein L2
CD: 50S ribosomal protein L3
CA: 23S rRNA
CE: 50S ribosomal protein L4
CF: 50S ribosomal protein L5
CG: 50S ribosomal protein L6
CH: 50S ribosomal protein L9
CJ: 50S ribosomal protein L11
CK: 50S ribosomal protein L13
CL: 50S ribosomal protein L14
CM: 50S ribosomal protein L15
CN: 50S ribosomal protein L16
CO: 50S ribosomal protein L17
CP: 50S ribosomal protein L18
CQ: 50S ribosomal protein L19
CR: 50S ribosomal protein L20
CS: 50S ribosomal protein L21
CT: 50S ribosomal protein L22
CU: 50S ribosomal protein L23
CV: 50S ribosomal protein L24
CW: 50S ribosomal protein L25
CX: 50S ribosomal protein L27
CY: 50S ribosomal protein L28
CZ: 50S ribosomal protein L29
hetero molecules


Theoretical massNumber of molelcules
Total (without water)2,123,918257
Polymers2,118,16252
Non-polymers5,757205
Water46826
TypeNameSymmetry operationNumber
identity operation1_555x,y,z1
Unit cell
Length a, b, c (Å)212.180, 434.820, 624.260
Angle α, β, γ (deg.)90.000, 90.000, 90.000
Int Tables number19
Space group name H-MP212121

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Components

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RNA chain , 4 types, 6 molecules AABACBDBCADA

#1: RNA chain 16S rRNA /


Mass: 497404.969 Da / Num. of mol.: 2
Source method: isolated from a genetically manipulated source
Source: (gene. exp.) Escherichia coli (E. coli) / Production host: Escherichia coli (E. coli) / References: GenBank: 675819282
#28: RNA chain 5S rRNA / 5S ribosomal RNA


Mass: 38790.090 Da / Num. of mol.: 2
Source method: isolated from a genetically manipulated source
Source: (gene. exp.) Escherichia coli (E. coli) / Production host: Escherichia coli (E. coli) / References: GenBank: 937521852
#31: RNA chain 23S rRNA / 23S ribosomal RNA


Mass: 941809.562 Da / Num. of mol.: 1
Source method: isolated from a genetically manipulated source
Source: (gene. exp.) Escherichia coli (E. coli) / Production host: Escherichia coli (E. coli) / References: GenBank: 42756
#55: RNA chain 23S rRNA / 23S ribosomal RNA


Mass: 941811.562 Da / Num. of mol.: 1
Source method: isolated from a genetically manipulated source
Source: (gene. exp.) Escherichia coli K-12 (bacteria) / Production host: Escherichia coli K-12 (bacteria) / References: GenBank: 802133627

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30S ribosomal protein ... , 20 types, 40 molecules ABBBACBCADBDAEBEAFBFAGBGAHBHAIBIAJBJAKBKALBLAMBMANBNAOBOAPBP...

#2: Protein 30S ribosomal protein S2 /


Mass: 24971.764 Da / Num. of mol.: 2 / Source method: isolated from a natural source / Source: (natural) Escherichia coli (strain K12) (bacteria) / Strain: K12 / References: UniProt: P0A7V0
#3: Protein 30S ribosomal protein S3 /


Mass: 23078.785 Da / Num. of mol.: 2 / Source method: isolated from a natural source / Source: (natural) Escherichia coli (strain K12) (bacteria) / Strain: K12 / References: UniProt: P0A7V3
#4: Protein 30S ribosomal protein S4 /


Mass: 23383.002 Da / Num. of mol.: 2 / Source method: isolated from a natural source / Source: (natural) Escherichia coli (strain K12) (bacteria) / Strain: K12 / References: UniProt: P0A7V8
#5: Protein 30S ribosomal protein S5 /


Mass: 16361.878 Da / Num. of mol.: 2 / Source method: isolated from a natural source / Source: (natural) Escherichia coli (strain K12) (bacteria) / Strain: K12 / References: UniProt: P0A7W1
#6: Protein 30S ribosomal protein S6 /


Mass: 12326.251 Da / Num. of mol.: 2 / Source method: isolated from a natural source / Source: (natural) Escherichia coli (strain K12) (bacteria) / Strain: K12 / References: UniProt: P02358
#7: Protein 30S ribosomal protein S7 /


Mass: 16861.523 Da / Num. of mol.: 2 / Source method: isolated from a natural source / Source: (natural) Escherichia coli (strain K12) (bacteria) / Strain: K12 / References: UniProt: P02359
#8: Protein 30S ribosomal protein S8 /


Mass: 14015.361 Da / Num. of mol.: 2 / Source method: isolated from a natural source / Source: (natural) Escherichia coli (strain K12) (bacteria) / Strain: K12 / References: UniProt: P0A7W7
#9: Protein 30S ribosomal protein S9 /


Mass: 14554.882 Da / Num. of mol.: 2 / Source method: isolated from a natural source / Source: (natural) Escherichia coli (strain K12) (bacteria) / Strain: K12 / References: UniProt: P0A7X3
#10: Protein 30S ribosomal protein S10 /


Mass: 11325.117 Da / Num. of mol.: 2 / Source method: isolated from a natural source / Source: (natural) Escherichia coli (strain K12) (bacteria) / Strain: K12 / References: UniProt: P0A7R5
#11: Protein 30S ribosomal protein S11 /


Mass: 12487.200 Da / Num. of mol.: 2 / Source method: isolated from a natural source / Source: (natural) Escherichia coli (strain K12) (bacteria) / Strain: K12 / References: UniProt: P0A7R9
#12: Protein 30S ribosomal protein S12 /


Mass: 13683.053 Da / Num. of mol.: 2 / Source method: isolated from a natural source / Source: (natural) Escherichia coli (strain K12) (bacteria) / Strain: K12 / References: UniProt: P0A7S3
#13: Protein 30S ribosomal protein S13 /


Mass: 12625.753 Da / Num. of mol.: 2 / Source method: isolated from a natural source / Source: (natural) Escherichia coli (strain K12) (bacteria) / Strain: K12 / References: UniProt: P0A7S9
#14: Protein 30S ribosomal protein S14 /


Mass: 11475.364 Da / Num. of mol.: 2 / Source method: isolated from a natural source / Source: (natural) Escherichia coli (strain K12) (bacteria) / Strain: K12 / References: UniProt: P0AG59
#15: Protein 30S ribosomal protein S15 /


Mass: 10159.621 Da / Num. of mol.: 2 / Source method: isolated from a natural source / Source: (natural) Escherichia coli (strain K12) (bacteria) / Strain: K12 / References: UniProt: P0ADZ4
#16: Protein 30S ribosomal protein S16 /


Mass: 9207.572 Da / Num. of mol.: 2 / Source method: isolated from a natural source / Source: (natural) Escherichia coli (strain K12) (bacteria) / Strain: K12 / References: UniProt: P0A7T3
#17: Protein 30S ribosomal protein S17 /


Mass: 9263.946 Da / Num. of mol.: 2 / Source method: isolated from a natural source / Source: (natural) Escherichia coli (strain K12) (bacteria) / Strain: K12 / References: UniProt: P0AG63
#18: Protein 30S ribosomal protein S18 /


Mass: 6466.477 Da / Num. of mol.: 2 / Source method: isolated from a natural source / Source: (natural) Escherichia coli (strain K12) (bacteria) / Strain: K12 / References: UniProt: P0A7T7
#19: Protein 30S ribosomal protein S19 /


Mass: 9057.626 Da / Num. of mol.: 2 / Source method: isolated from a natural source / Source: (natural) Escherichia coli (strain K12) (bacteria) / Strain: K12 / References: UniProt: P0A7U3
#20: Protein 30S ribosomal protein S20 /


Mass: 9577.268 Da / Num. of mol.: 2 / Source method: isolated from a natural source / Source: (natural) Escherichia coli (strain K12) (bacteria) / Strain: K12 / References: UniProt: P0A7U7
#21: Protein 30S ribosomal protein S21 /


Mass: 6629.744 Da / Num. of mol.: 2 / Source method: isolated from a natural source / Source: (natural) Escherichia coli (strain K12) (bacteria) / Strain: K12 / References: UniProt: P68679

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50S ribosomal protein ... , 31 types, 59 molecules C1D1C2D2C3D3C4D4C5D5C0D0CCDCCDDDCEDECFDFCGDGCHDHCJDJCKDKCLDL...

#22: Protein 50S ribosomal protein L32 /


Mass: 6332.249 Da / Num. of mol.: 2 / Source method: isolated from a natural source / Source: (natural) Escherichia coli (strain K12) (bacteria) / Strain: K12 / References: UniProt: P0A7N4
#23: Protein 50S ribosomal protein L33 /


Mass: 5928.000 Da / Num. of mol.: 2 / Source method: isolated from a natural source / Source: (natural) Escherichia coli (strain K12) (bacteria) / Strain: K12 / References: UniProt: P0A7N9
#24: Protein/peptide 50S ribosomal protein L34 /


Mass: 5397.463 Da / Num. of mol.: 2 / Source method: isolated from a natural source / Source: (natural) Escherichia coli (strain K12) (bacteria) / Strain: K12 / References: UniProt: P0A7P5
#25: Protein 50S ribosomal protein L35 / / Ribosomal protein A


Mass: 7181.835 Da / Num. of mol.: 2 / Source method: isolated from a natural source / Source: (natural) Escherichia coli (strain K12) (bacteria) / Strain: K12 / References: UniProt: P0A7Q1
#26: Protein/peptide 50S ribosomal protein L36 / / Ribosomal protein B


Mass: 4377.390 Da / Num. of mol.: 2 / Source method: isolated from a natural source / Source: (natural) Escherichia coli (strain K12) (bacteria) / Strain: K12 / References: UniProt: P0A7Q6
#27: Protein 50S ribosomal protein L30 /


Mass: 6423.625 Da / Num. of mol.: 2 / Source method: isolated from a natural source / Source: (natural) Escherichia coli (strain K12) (bacteria) / Strain: K12 / References: UniProt: P0AG51
#29: Protein 50S ribosomal protein L2 /


Mass: 29792.424 Da / Num. of mol.: 2 / Source method: isolated from a natural source / Source: (natural) Escherichia coli (strain K12) (bacteria) / Strain: K12 / References: UniProt: P60422
#30: Protein 50S ribosomal protein L3 /


Mass: 22277.535 Da / Num. of mol.: 1 / Source method: isolated from a natural source / Source: (natural) Escherichia coli (strain K12) (bacteria) / Strain: K12 / References: UniProt: P60438
#32: Protein 50S ribosomal protein L3 /


Mass: 22291.562 Da / Num. of mol.: 1 / Source method: isolated from a natural source / Source: (natural) Escherichia coli (strain K12) (bacteria) / Strain: K12 / References: UniProt: P60438
#33: Protein 50S ribosomal protein L4 /


Mass: 22121.566 Da / Num. of mol.: 2 / Source method: isolated from a natural source / Source: (natural) Escherichia coli (strain K12) (bacteria) / Strain: K12 / References: UniProt: P60723
#34: Protein 50S ribosomal protein L5 /


Mass: 20202.416 Da / Num. of mol.: 2 / Source method: isolated from a natural source / Source: (natural) Escherichia coli (strain K12) (bacteria) / Strain: K12 / References: UniProt: P62399
#35: Protein 50S ribosomal protein L6 /


Mass: 18801.598 Da / Num. of mol.: 2 / Source method: isolated from a natural source / Source: (natural) Escherichia coli (strain K12) (bacteria) / Strain: K12 / References: UniProt: P0AG55
#36: Protein 50S ribosomal protein L9 /


Mass: 15789.020 Da / Num. of mol.: 2 / Source method: isolated from a natural source / Source: (natural) Escherichia coli (strain K12) (bacteria) / Strain: K12 / References: UniProt: P0A7R1
#37: Protein 50S ribosomal protein L11 /


Mass: 14020.303 Da / Num. of mol.: 2 / Source method: isolated from a natural source / Source: (natural) Escherichia coli (strain K12) (bacteria) / Strain: K12 / References: UniProt: P0A7J7
#38: Protein 50S ribosomal protein L13 /


Mass: 16050.606 Da / Num. of mol.: 2 / Source method: isolated from a natural source / Source: (natural) Escherichia coli (strain K12) (bacteria) / Strain: K12 / References: UniProt: P0AA10
#39: Protein 50S ribosomal protein L14 /


Mass: 13565.067 Da / Num. of mol.: 2 / Source method: isolated from a natural source / Source: (natural) Escherichia coli (strain K12) (bacteria) / Strain: K12 / References: UniProt: P0ADY3
#40: Protein 50S ribosomal protein L15 /


Mass: 15008.471 Da / Num. of mol.: 2 / Source method: isolated from a natural source / Source: (natural) Escherichia coli (strain K12) (bacteria) / Strain: K12 / References: UniProt: P02413
#41: Protein 50S ribosomal protein L16 /


Mass: 15327.261 Da / Num. of mol.: 2 / Source method: isolated from a natural source / Source: (natural) Escherichia coli (strain K12) (bacteria) / Strain: K12 / References: UniProt: P0ADY7
#42: Protein 50S ribosomal protein L17 /


Mass: 14193.465 Da / Num. of mol.: 2 / Source method: isolated from a natural source / Source: (natural) Escherichia coli (strain K12) (bacteria) / Strain: K12 / References: UniProt: P0AG44
#43: Protein 50S ribosomal protein L18 /


Mass: 12794.668 Da / Num. of mol.: 2 / Source method: isolated from a natural source / Source: (natural) Escherichia coli (strain K12) (bacteria) / Strain: K12 / References: UniProt: P0C018
#44: Protein 50S ribosomal protein L19 /


Mass: 13028.082 Da / Num. of mol.: 2 / Source method: isolated from a natural source / Source: (natural) Escherichia coli (strain K12) (bacteria) / Strain: K12 / References: UniProt: P0A7K6
#45: Protein 50S ribosomal protein L20 /


Mass: 13396.828 Da / Num. of mol.: 2 / Source method: isolated from a natural source / Source: (natural) Escherichia coli (strain K12) (bacteria) / Strain: K12 / References: UniProt: P0A7L3
#46: Protein 50S ribosomal protein L21 /


Mass: 11586.374 Da / Num. of mol.: 2 / Source method: isolated from a natural source / Source: (natural) Escherichia coli (strain K12) (bacteria) / Strain: K12 / References: UniProt: P0AG48
#47: Protein 50S ribosomal protein L22 /


Mass: 12253.359 Da / Num. of mol.: 2 / Source method: isolated from a natural source / Source: (natural) Escherichia coli (strain K12) (bacteria) / Strain: K12 / References: UniProt: P61175
#48: Protein 50S ribosomal protein L23 /


Mass: 10546.472 Da / Num. of mol.: 2 / Source method: isolated from a natural source / Source: (natural) Escherichia coli (strain K12) (bacteria) / Strain: K12 / References: UniProt: P0ADZ0
#49: Protein 50S ribosomal protein L24 /


Mass: 11208.054 Da / Num. of mol.: 2 / Source method: isolated from a natural source / Source: (natural) Escherichia coli (strain K12) (bacteria) / Strain: K12 / References: UniProt: P60624
#50: Protein 50S ribosomal protein L25 /


Mass: 10713.465 Da / Num. of mol.: 2 / Source method: isolated from a natural source / Source: (natural) Escherichia coli (strain K12) (bacteria) / Strain: K12 / References: UniProt: P68919
#51: Protein 50S ribosomal protein L27 /


Mass: 8275.498 Da / Num. of mol.: 2 / Source method: isolated from a natural source / Source: (natural) Escherichia coli (E. coli) / Strain: K12 / References: UniProt: P0A7L8
#52: Protein 50S ribosomal protein L28 /


Mass: 8896.354 Da / Num. of mol.: 2 / Source method: isolated from a natural source / Source: (natural) Escherichia coli (strain K12) (bacteria) / Strain: K12 / References: UniProt: P0A7M2
#53: Protein 50S ribosomal protein L29 /


Mass: 7155.267 Da / Num. of mol.: 2 / Source method: isolated from a natural source / Source: (natural) Escherichia coli (strain K12) (bacteria) / Strain: K12 / References: UniProt: P0A7M6
#54: Protein 50S ribosomal protein L10 / / 50S ribosomal protein L8


Mass: 14568.748 Da / Num. of mol.: 1 / Source method: isolated from a natural source / Source: (natural) Escherichia coli (strain K12) (bacteria) / Strain: K12 / References: UniProt: P0A7J3

-
Non-polymers , 15 types, 8300 molecules

#56: Chemical...
ChemComp-MG / MAGNESIUM ION


Mass: 24.305 Da / Num. of mol.: 469 / Source method: obtained synthetically / Formula: Mg
#57: Chemical
ChemComp-PG4 / TETRAETHYLENE GLYCOL / Polyethylene glycol


Mass: 194.226 Da / Num. of mol.: 7 / Source method: obtained synthetically / Formula: C8H18O5 / Comment: precipitant*YM
#58: Chemical
ChemComp-MPD / (4S)-2-METHYL-2,4-PENTANEDIOL / 2-Methyl-2,4-pentanediol


Mass: 118.174 Da / Num. of mol.: 14 / Source method: obtained synthetically / Formula: C6H14O2 / Comment: precipitant*YM
#59: Chemical
ChemComp-PUT / 1,4-DIAMINOBUTANE / PUTRESCINE / Putrescine


Mass: 88.151 Da / Num. of mol.: 16 / Source method: obtained synthetically / Formula: C4H12N2
#60: Chemical ChemComp-T1C / TIGECYCLINE / Tigecycline


Mass: 587.665 Da / Num. of mol.: 2 / Source method: obtained synthetically / Formula: C29H41N5O8 / Comment: medication, antibiotic*YM
#61: Chemical ChemComp-ZN / ZINC ION


Mass: 65.409 Da / Num. of mol.: 3 / Source method: obtained synthetically / Formula: Zn
#62: Chemical
ChemComp-PEG / DI(HYDROXYETHYL)ETHER / Diethylene glycol


Mass: 106.120 Da / Num. of mol.: 11 / Source method: obtained synthetically / Formula: C4H10O3
#63: Chemical
ChemComp-EDO / 1,2-ETHANEDIOL / ETHYLENE GLYCOL / Ethylene glycol


Mass: 62.068 Da / Num. of mol.: 12 / Source method: obtained synthetically / Formula: C2H6O2
#64: Chemical
ChemComp-PGE / TRIETHYLENE GLYCOL / Polyethylene glycol


Mass: 150.173 Da / Num. of mol.: 9 / Source method: obtained synthetically / Formula: C6H14O4
#65: Chemical
ChemComp-SPD / SPERMIDINE / N-(2-AMINO-PROPYL)-1,4-DIAMINOBUTANE / PA(34) / Spermidine


Mass: 145.246 Da / Num. of mol.: 4 / Source method: obtained synthetically / Formula: C7H19N3
#66: Chemical ChemComp-1PE / PENTAETHYLENE GLYCOL / PEG400 / Polyethylene glycol


Mass: 238.278 Da / Num. of mol.: 2 / Source method: obtained synthetically / Formula: C10H22O6 / Comment: precipitant*YM
#67: Chemical ChemComp-ACY / ACETIC ACID / Acetic acid


Mass: 60.052 Da / Num. of mol.: 3 / Source method: obtained synthetically / Formula: C2H4O2
#68: Chemical ChemComp-GUN / GUANINE / Guanine


Mass: 151.126 Da / Num. of mol.: 1 / Source method: obtained synthetically / Formula: C5H5N5O
#69: Chemical ChemComp-TRS / 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL / TRIS BUFFER / Tris


Mass: 122.143 Da / Num. of mol.: 1 / Source method: obtained synthetically / Formula: C4H12NO3 / Comment: pH buffer*YM
#70: Water ChemComp-HOH / water / Water


Mass: 18.015 Da / Num. of mol.: 7746 / Source method: isolated from a natural source / Formula: H2O

-
Experimental details

-
Experiment

ExperimentMethod: X-RAY DIFFRACTION / Number of used crystals: 1

-
Sample preparation

CrystalDensity Matthews: 3.39 Å3/Da / Density % sol: 63.73 %
Crystal growTemperature: 291 K / Method: microbatch / pH: 6.5
Details: PEG 8k, Spermidine, Putrescine, Ammonium Chloride, MAgnesium Chloride, MPD, MES pH 6.5

-
Data collection

DiffractionMean temperature: 100 K
Diffraction sourceSource: SYNCHROTRON / Site: APS / Beamline: 17-ID / Wavelength: 1 Å
DetectorType: DECTRIS PILATUS 6M / Detector: PIXEL / Date: Apr 25, 2014
RadiationProtocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray
Radiation wavelengthWavelength: 1 Å / Relative weight: 1
ReflectionResolution: 2.96→48.51 Å / Num. obs: 1150983 / % possible obs: 97.1 % / Redundancy: 3.9 % / Net I/σ(I): 207.3

-
Processing

Software
NameVersionClassification
Aimlessdata scaling
BUSTER-TNT2.11.6refinement
PDB_EXTRACT3.2data extraction
XDSdata reduction
BUSTERphasing
RefinementResolution: 2.96→48.51 Å / Cor.coef. Fo:Fc: 0.901 / Cor.coef. Fo:Fc free: 0.85 / Rfactor Rfree error: 0 / Cross valid method: THROUGHOUT / σ(F): 0 / SU Rfree Blow DPI: 0.362
RfactorNum. reflection% reflectionSelection details
Rfree0.221 4163 0 %RANDOM
Rwork0.208 ---
obs0.208 1049862 88.6 %-
Displacement parametersBiso max: 300 Å2 / Biso mean: 123.72 Å2 / Biso min: 5.89 Å2
Baniso -1Baniso -2Baniso -3
1--2.1719 Å20 Å20 Å2
2--9.4553 Å20 Å2
3----7.2833 Å2
Refine analyzeLuzzati coordinate error obs: 0.43 Å
Refinement stepCycle: final / Resolution: 2.96→48.51 Å
ProteinNucleic acidLigandSolventTotal
Num. atoms90649 195374 1173 7746 294942
Biso mean--93.14 66.09 -
Num. residues----20707
Refine LS restraints
Refine-IDTypeNumberRestraint functionWeightDev ideal
X-RAY DIFFRACTIONt_dihedral_angle_d80778SINUSOIDAL2
X-RAY DIFFRACTIONt_trig_c_planes2047HARMONIC2
X-RAY DIFFRACTIONt_gen_planes23415HARMONIC5
X-RAY DIFFRACTIONt_it311622HARMONIC20
X-RAY DIFFRACTIONt_nbd37SEMIHARMONIC5
X-RAY DIFFRACTIONt_improper_torsion
X-RAY DIFFRACTIONt_pseud_angle
X-RAY DIFFRACTIONt_chiral_improper_torsion48420SEMIHARMONIC5
X-RAY DIFFRACTIONt_sum_occupancies
X-RAY DIFFRACTIONt_utility_distance1774HARMONIC1
X-RAY DIFFRACTIONt_utility_angle3169HARMONIC1
X-RAY DIFFRACTIONt_utility_torsion
X-RAY DIFFRACTIONt_ideal_dist_contact321319SEMIHARMONIC4
X-RAY DIFFRACTIONt_bond_d311622HARMONIC20.01
X-RAY DIFFRACTIONt_angle_deg465738HARMONIC20.9
X-RAY DIFFRACTIONt_omega_torsion2.66
X-RAY DIFFRACTIONt_other_torsion21.51
LS refinement shellResolution: 2.96→3.04 Å / Total num. of bins used: 20
RfactorNum. reflection% reflection
Rfree0.301 156 0.36 %
Rwork0.308 42828 -
all-42984 -
obs--49.37 %
Refinement TLS params.

Method: refined / Refine-ID: X-RAY DIFFRACTION

IDL11 (°2)L12 (°2)L13 (°2)L22 (°2)L23 (°2)L33 (°2)S11 (Å °)S12 (Å °)S13 (Å °)S21 (Å °)S22 (Å °)S23 (Å °)S31 (Å °)S32 (Å °)S33 (Å °)T11 (Å2)T12 (Å2)T13 (Å2)T22 (Å2)T23 (Å2)T33 (Å2)Origin x (Å)Origin y (Å)Origin z (Å)
10.0146-0.2259-0.05810.253-0.22210.0515-0.04360.0307-0.0108-0.00350.0510.0657-0.0688-0.0401-0.0074-0.17310.036-0.0017-0.16780.07760.2895-88.188625.1169-35.5872
20.27420.08930.05330.278-0.103500.0827-0.0127-0.11930.0470.00270.0833-0.12180.0393-0.08530.3022-0.152-0.152-0.24050.0723-0.1599-46.089677.292486.3049
30-0.08381.26051.0077-0.38830-0.0009-0.00610.00810.0061-0.0008-0.0147-0.0028-0.00270.00180.01970.0469-0.0228-0.05460.03960.0402-92.276885.6768-19.2357
40.01420.43830.316100.27940.73830.0010.00780.00170.0033-0.0009-0.00010.00460.0047-0.00010.0553-0.0206-0.01220.0163-0.0175-0.0279-36.641891.52126.0904
50-0.19150.15710.7532-1.99320-0.00320.0122-0.0205-0.01320.0080.0020.0058-0.0082-0.0048-0.03380.05060.0198-0.04010.08540.0528-140.587452.8232-37.7209
60.39390.72950.54050.6362-0.53050.3836-0.00070.0019-0.00370.00160.00140.0061-0.0076-0.0015-0.00070.0183-0.0434-0.01740.0070.01820.0283-91.140980.308547.7577
70-2.3496-0.27230.1228-2.259500.00340.00990.0102-0.013-0.00350.0061-0.0093-0.01340.00010.02050.1253-0.071-0.02960.120.0047-94.970844.3108-80.0977
80.1630.03841.23310.77080.39590.0070.00250.0158-0.021-0.0089-0.0145-0.0208-0.013-0.00290.0120.0244-0.0599-0.1006-0.1108-0.06770.021-53.402134.358565.8701
90.1248-0.7314-0.89820.6366-2.3970.2851-0.00140.00110.0032-0.0196-0.00260.0134-0.02350.00430.004-0.00820.0553-0.0247-0.04330.10120.0226-86.769657.594-44.3689
100.0127-0.55561.24120.22251.15860.0234-0.00090.0061-0.0154-0.0062-0.0032-0.02130.0040.00710.00410.06-0.0464-0.0901-0.0244-0.023-0.007-41.160468.262855.8535
110.14920.39140.05150.39620.82760.2386-0.0009-0.00080.00320.0014-0.0011-0.0008-0.00280.00460.0020.0332-0.0166-0.0139-0.0173-0.03580.0125-47.946544.218635.8691
120.22860.5326-0.36940.143-0.44290-0.00160.00150.00640.00150.0006-0.0017-0.00120.01110.0010.0015-0.04540.0113-0.02960.03920.01139.1536141.467673.8241
130.2164-0.6312-0.64130.4462-0.31730.59860.0013-0.00940.00210.0061-0.00020.00460.0033-0.0084-0.00110.02020.0250.02120.02220.00780.0165-131.525349.457930.9013
140.24960.14350.33960.29670.10120.24920.0009-0.00030.0025-0.0002-0.00030.00390.00040.0007-0.00050.00710.0013-0.00760.0016-0.00040.0109-76.4196147.870654.1655
1500.2842-0.12620.5549-0.46870-0.0001-0.00540.00840.0035-0.0012-0.0032-0.0123-0.00010.00130.0008-0.0149-0.0035-0.04310.05770.048-54.01461.793-37.4674
160.0372-0.2128-0.09260.50940.35110.34940.00130.0033-0.0077-0.0041-0.0006-0.00710.00150.005-0.00070.0308-0.0016-0.0058-0.0197-0.00970.0206-6.638869.273957.1467
170.0872-0.2167-0.92420.11490.365800.0023-0.01360.00460.0066-0.0056-0.0003-0.0174-0.00670.00330.00780.03730.03310.01660.01350.0239-152.352167.384814.337
180.45990.19560.08760.0863-0.15360.0232-0.0003-0.0030.0018-0.00010.00040.0043-0.0010.0001-0.00010.0043-0.0022-0.0210.00310.01460.0104-94.5638133.15332.0313
190.59370.1599-1.54440.1832-2.06970-0.0007-0.0032-0.0021-0.0025-0.00380.0014-0.0132-0.01690.0044-0.00860.04090.01990.00470.05860.0364-162.656864.2473-20.0775
200.01750.49640.03360.4873-0.31090.00530.00070.0015-0.00240.0027-0.00240.0003-0.00120.00150.00170.0057-0.0069-0.00840.00430.00640.0091-108.509699.943132.6283
210-1.6417-0.45060.0436-0.13240.29390.0029-0.02230.00990.0134-0.00370.003-0.0035-0.00470.00080.0250.05720.00470.0193-0.01320.0137-93.069635.777437.8501
220-0.13590.21680.23250.15780.31240.00130.00320.02310.0001-0.0050.0044-0.0009-0.010.00370.0264-0.0310.012-0.0110.00240.0071-36.0884151.642174.099
230.253-0.1180.71470.1036-0.23140-0.00040.0042-0.0238-0.0084-0.00480.032-0.0047-0.01370.0052-0.0540.0568-0.0265-0.01870.06640.0533-91.527810.5551-47.4012
240.09090.4797-0.09610.0007-0.46670.0004-0.0005-0.008200.0276-0.00940.00850.0027-0.00830.00990.0727-0.0528-0.0294-0.01110.00160.0047-54.131166.3449100.2413
250-0.3828-0.5370.5077-0.81660.05750.0012-0.00780.00150.0049-0.0024-0.00080.001-0.00760.00120.00460.00130.00720.00450.02920.0244-165.30814.732321.1022
260.0674-0.0003-0.05640.0130.09980.16480-0.00030.00090.00080.00070.0004-0.00020.0012-0.00070.0020.00270.0010.0022-0.00190.0026-117.4749141.259481.2895
270.1831-0.44220.85270.5265-1.214100.00120.00840.0002-0.003-0.0112-0.01220.02-0.01550.01-0.0050.01210.00190.00190.05140.0371-164.001932.1248-22.3018
280.17140.08160.1240.4333-0.10190.1817-0.00060.00080.00180.0006-0.0016-0.0053-0.00150.00420.00210.0057-0.0054-0.00250.00760.00540.0101-116.748297.806963.7563
290.2299-0.11440.30810.2072-0.37120-0.00080.00320.00140.00120.0020.0013-0.00160.0098-0.0012-0.0141-0.0071-0.047-0.01440.00740.0299-34.150538.3586-3.7704
300.09210.2466-0.21770.1483-0.066100.00050.0018-0.00290.00280.0032-0.0047-0.00090.0131-0.00370.0114-0.0341-0.0182-0.01260.01940.010614.183100.683282.7514
310.44410.2953-0.11630.1503-1.291200.0005-0.0007-0.0036-0.00470-0.0035-0.00560.0041-0.00050.0255-0.00010.0238-0.01720.09290.0001-52.264325.5176-88.8213
320.3361-0.05650.15250.6177-0.31220.1952-0.00130.0010.0046-0.00130.00390.0021-0.00120.0033-0.00250.0128-0.0029-0.02480.010.02040.0372-17.469920.811294.0277
330.04540.0828-0.79020.1934-0.94540-0.0008-0.0026-0.0001-0.00160.004-0.0101-0.00290.0139-0.0032-0.0245-0.02660.0185-0.00760.03840.0238-30.475928.7952-42.9696
340.03710.43320.44840.7097-0.55480-0.001-0.00460.0021-0.00540.00320.00170.00170.0091-0.00230.0064-0.0099-0.01610.00450.01020.01199.056863.768495.3262
350.1144-0.20120.03120.26250.25960.17930.0006-0.00170.00160.00040-0.0013-0.002-0.0016-0.00060.02570.0222-0.0079-0.0057-0.0020.0158-65.823151.767126.5638
3600.2445-0.09780.1189-0.37950.12290.00020.00130.0022-0.0015-0.0010.00050.0019-0.00110.00080.0131-0.02320.008-0.01320.0268-0.0058-9.0061134.872563.1317
370.32250.0077-0.00930.7358-0.35020.2875-0.0004-0.0007-0.00010.00180-0.00470.0005-0.00070.00050.0146-0.0112-0.0020.01660.02810.0346-169.85533.2164-11.2823
3800.0142-0.02070-0.02180.0184-0.0002-0.00050.00030.0009-0.00020.0005-0.000300.0003-0.000300.00180.0018-0.00070.0014-127.1515109.245691.1995
390.0110.7007-0.16820-0.677600.0015-0.00520.0029-0.0075-0.0026-0.0083-0.00570.00650.0011-0.0202-0.00290.07590.00290.04660.0207-19.1085-4.8248-69.1402
400.159-0.26720.48890.2862-1.01560.11160.0004-0.0037-0.0016-0.00060.00540.0012-0.00070.0007-0.00580.00750.009-0.01490.01320.01540.008310.201537.8831130.8918
410.0563-0.3397-0.07090.2196-0.26620.20080.0007-0.00980.00070.0032-0.00320.00140.00090.00060.00240.00810.0140.00220.0004-0.00040.0116-85.369246.408822.653
4200.22680.34860.27380.34320.37860.0020.00790.01110.0028-0.0013-0.00030.0025-0.0052-0.00080.0171-0.01480.0006-0.00720.0104-0.0055-29.0634134.816465.3284
430.194-0.00020.00170.221-0.07110.26230.00010.00120.0007-0.0004-0.0011-0.00230.00070.00080.0010.01370.00330.00950.022-0.00120.0075-92.2428146.7914200.7018
440.6644-0.14660.16360.1333-0.38790-0.00250.00610.00570.00070.0031-0.00180.0123-0.0033-0.0007-0.08480.00420.0010.01220.03560.0377-123.2887-100.105214.5489
450-1.2376-0.767100.2920.88930.0003-0.0001-0.00840.00470.0014-0.00960.0045-0.0029-0.00170.00580.0007-0.00590.022-0.0034-0.0061-12.620299.7495210.0023
460.37350.0285-0.05110.1350.03040.15640.00250.0025-0.0156-0.01510.0126-0.01440.0286-0.0151-0.0151-0.0777-0.0020.00880.01860.01330.0262-36.2905-90.6154-11.6952
470.08990.0921-0.12920.0984-0.19610.1473-0.000100.00020.0009-0.0002-0.0007-0.0012-0.00110.00030.0126-0.00260.00820.00390.0040.0067-79.0226181.2506133.6088
480.2479-0.6201-0.47710.12790.00890-0.0008-0.00270.0038-0.0018-0.00030.0019-0.00550.0030.001-0.01020.02220.02680.0118-0.02160.0132-131.4617-35.455654.0581
490.49660.1220.0970.14450.12460.50110.0001-0.00230.00150.00140.00060.0007-0.00340.0021-0.00070.0199-0.0159-0.00930.0304-0.02450.01440.0662146.8409166.0773
500.58730.13250.2450-0.44220.02670.0019-0.0036-0.00760.0101-0.00580.00440.013-0.00260.004-0.05-0.0104-0.05220.0085-0.0040.0144-42.4409-50.501238.5082
510.3078-0.0242-0.50040.37030.24030.48990-0.00290.00090.00470.0028-0.00040.00020.0041-0.00270.0219-0.00580.01220.0184-0.0110.0127-63.8488176.727162.3239
520.2542-0.381-0.64580.0008-0.01720.2342-0.0003-0.0044-0.00440.01050.0040.00180.008-0.0027-0.0037-0.0370.01810.03880.0208-0.0095-0.0026-110.5899-60.407551.8705
530.120.0466-0.09290.1447-0.1430.17020.00040.0013-0.0004-0.0019-0.00140.00120.00070.00180.0010.0098-0.00890.00420.01390.01120.0122-92.436585.2566171.971
540.27460.4215-0.05160-0.35240-0.00130.00560.0018-0.00030.0005-0.00070-0.00170.0008-0.0343-0.0205-0.02760.02610.01620.0068-114.602-66.4677-44.1133
550.0286-0.1493-0.209900.12260.3225-0.0765-0.25010.019-0.02540.3060.0722-0.13540.3475-0.22960.2803-0.1520.03470.304-0.152-0.304-31.2781134.0027165.1355
560.1332-0.005-0.02240.05280.00580.0365-0.0234-0.02220.07130.03490.0115-0.01540.0143-0.00330.0118-0.19490.0108-0.0423-0.04950.00950.1282-69.2337-53.957817.275
570.5111-1.0058-0.1250.334-1.20240.4005-0.0019-0.0112-0.00860.00170.00520.01410.0042-0.0031-0.0032-0.01020.01790.00160.00790.0336-0.0021-123.9542155.3202154.8888
580.9896-0.4415-0.33080.14160.40670.28870.02760.0615-0.0324-0.0359-0.04670.07530.04680.02490.0191-0.29960.01450.06480.02290.08960.1528-163.5488-61.904416.0031
5902.8870.47260.00111.295700.0085-0.03450.0107-0.00630.0083-0.0269-0.00630.0113-0.01670.0128-0.15030.01450.0046-0.0766-0.079-1.2435138.3213117.4127
600.1377-0.1326-0.11270.35170.1470.02910.003-0.00420.04890.02850.0011-0.0427-0.0131-0.0271-0.0041-0.1414-0.0784-0.1042-0.1401-0.1080.1801-50.95-2.383531.4246
610-0.95090.13170.0001-1.44560.1679-0.0036-0.0164-0.02310.0157-0.00090.00430.02570.00660.00450.03350.04520.00480.04090.0458-0.0307-37.97872.1144195.5452
620.2672-0.0946-0.06330.0190.15850-0.00330.0509-0.0235-0.0135-0.0037-0.0194-0.00150.00790.007-0.1228-0.02460.01030.0790.04830.0446-55.5733-78.4289-44.4808
630.25890.2120.34220.23891.02220.27340.00060.00420.01160.00260.0050.0052-0.012-0.0046-0.00560.0239-0.01680.00270.0159-0.045-0.0001-31.6179183.6369205.5677
640.64420.0394-0.27310.5158-0.32510.5613-0.019-0.0628-0.0112-0.01280.02230.0238-0.00380.0224-0.0034-0.04660.06070.02440.02660.085-0.0234-72.4903-97.16363.3157
650.0339-0.03640.04350.00570.11720.0703-0.00020.0015-0.0007-0.00110.00170.00010-0.0017-0.00150.00040.00260.00030.0048-0.00190.0016-124.2012155.0009113.8861
661.0789-0.0471.02370.7658-0.097400.0010.00710.00860.016-0.0060.0165-0.08960.0190.0049-0.141-0.033-0.0171-0.00710.07020.0845-170.5865-20.791218.3021
670.07220.3742-0.24120.6434-0.30880.18860-0.00050.0012-0.0018-0.00230.00260.00580.00210.00230.0089-0.00530.01850.00960.01880.0113-94.791164.3128187.9872
680.45940.74370.24110.03880.2940.0262-0.00610.0565-0.019-0.019-0.01450.00850.00410.01430.0206-0.0661-0.13040.02170.0412-0.0051-0.0249-108.8172-80.3561-66.3779
690.05080.3119-1.99840.22790.81180.09280.00140.00260.01970.0029-0.0087-0.0066-0.0013-0.01190.0073-0.0041-0.02050.0304-0.0106-0.00550.00428.3304215.3311102.1638
700.00910.35160.12640-0.0930.53330.0009-0.0121-0.00710.01220.00260.0059-0.0047-0.0045-0.00350.0078-0.0259-0.0149-0.0088-0.0251-0.0083-63.71058.9808108.1344
710.0005-0.0455-0.05030-0.129400.00020.00060.00060.00030.000300.0015-0.0005-0.00050.001-0.00100.00260.0020.0018-119.965863.4673136.9108
720-0.1524-0.1520.1212-0.16980-0.00050.00050.0007-0.0019-0.00070.0005-0.00190.00090.00110.00220.00380.0001-0.00120.00290.0067-145.2428-36.3114-71.2068
730.3146-0.0203-0.24280.0686-0.2510.6170.0017-0.0090.00190.0030.00010.00220.00240.0046-0.00190.02660.00730.01230.0460.03210.0024-68.813197.9369213.2767
740.5384-0.1302-0.18480.0958-0.54690.0030.00240.0375-0.0288-0.0067-0.0057-0.0040.0094-0.00580.0033-0.1357-0.0324-0.02070.0524-0.06430.0719-87.3431-104.383-28.2666
750.4078-0.0712-0.13470.38-0.27410.673-0.00030.0007-0.0032-0.00030.00150.0044-0.0032-0.0047-0.00130.02750.01410.00450.03860.0423-0.0034-37.962165.8487151.6921
761.6386-0.3783-0.27860.0626-0.41030-0.00360.0057-0.0043-0.0255-0.00340.0059-0.012-0.00390.007-0.11190.0087-0.01260.02850.10590.0436-62.6747-35.353-49.0987
770-0.6219-0.9530.1497-0.12770.4403-0.00080.00010.0269-0.00430.00110.0022-0.00360.0033-0.00030.01130.00090.01530.0002-0.02-0.0096-54.8232188.3341177.6459
780.1920.02-0.09150.0648-0.18450-0.0091-0.0147-0.00490.0531-0.005-0.0076-0.01920.0040.014-0.05250.02140.03780.02410.0208-0.0124-100.7637-75.165462.989
790.29840.63720.45560-0.37550.37090-0.004-0.0094-0.0022-0.00190.0201-0.0017-0.00530.00190.009-0.0164-0.00570.02450.02570.0087-97.5805116.3232157.1155
801.2775-0.59990.59810-0.447600.0010.00940.0014-0.01510.00020.0052-0.0038-0.0132-0.0012-0.16640.0095-0.05960.04090.03770.0819-129.228-55.8645-14.0854
810.4024-0.56170.25090.26010.01981.23020-0.0002-0.00110.0028-0.0015-0.0011-0.0058-0.00220.00150.0270.0398-0.0290.0444-0.0012-0.00454.213582.4199193.7313
821.6818-0.2625-0.6890.397-0.59880.0004-0.00090.00820.0104-0.00920.0103-0.0090.00360.0067-0.0094-0.16530.00160.02070.03030.02440.1074-17.6105-70.5396-24.655
830.114-0.0753-0.10130.1496-0.10740.13390.00030.00020.0018-0.00020.00040.0006-0.0013-0.0004-0.00070.00450.01090.00780.00490.00620.0064-123.6157182.5261147.2558
841.3141-0.0936-0.82560.524-0.78640.00030.0019-0.00080.00150.01370.0059-0.0010.0164-0.0122-0.0078-0.1215-0.00620.12390.02390.05290.0581-171.7498-56.007842.8877
850.4383-0.78770.21270.3713-0.30930.5389-0.00090.0008-0.00070.00380.00370.0019-0.0011-0.0034-0.00270.0260.02930.0010.03110.0297-0.0012-17.807254.3043166.8986
860.88070.5769-0.93650.0001-0.28650-0.00030.00920.0174-0.0265-0.0069-0.0093-0.00030.00410.0073-0.0931-0.00510.06970.03550.10430.031-37.8425-45.6782-56.3391
870.01042.30720.40820.00030.41020.70410-0.0058-0.01580.00170.00730.01890.0029-0.005-0.00740.0081-0.00460.00250.032-0.0077-0.0061-64.2187128.2732216.9183
880.43390.14590.24830.20040.38570.1804-0.00490.0017-0.04350.0135-0.00970.01740.01530.0160.0146-0.1027-0.046-0.0025-0.00540.02850.1-88.4192-109.13432.6629
890.43080.30180.328700.20520.44750.0004-0.00730.00080.0037-0.00070.006-0.00210.00350.00030.0148-0.00720.0070.02970.0001-0.0077-69.1271138.4298228.9829
900.36680.16510.08290.50090.69930.12690.00060.0063-0.04360.0184-0.00230.0110.00980.01310.0017-0.0894-0.01170.0124-0.03650.04490.0835-93.2051-122.362510.505
910.5843-0.1953-0.03350.18660.13140.43690.00040.0023-0.00470.00170.00060-0.0013-0.0015-0.0010.02480.0035-0.01130.0407-0.0113-0.0031-11.5547117.2208212.6541
920.7631-0.1064-0.55620.64630.53890.0001-0.00210.0116-0.0337-0.0143-0.0065-0.0190.01270.00250.0086-0.14790.0373-0.01530.0210.03540.094-37.6417-94.04634.1142
930.12990.12770.4190.24820.4450.6300.0005-0.0020.00010.0005-0.001-0.0002-0.0028-0.00050.006-0.0096-0.01540.0196-0.01880.008533.0571140.8958181.7451
940.3891-0.27830.59950.3252-0.36410.3121-0.00270.00720.00120.01360.0018-0.00440.00030.00190.0009-0.0776-0.014-0.11110.00160.00210.0301-6.2236-59.033139.2263
950.32960.2182-0.28990.07530.14240.3924-0.0007-0.00120.0005-0.002-0.0012-0.0005-0.00280.00030.00190.0122-0.0056-0.0090.0125-0.01280.006110.494165.6112223.7099
960.347-0.98040.45670-0.25210.0086-0.00280.0013-0.0084-0.01650.0119-0.0154-0.01580.0125-0.0092-0.03390.0684-0.04090.01580.0391-0.0211-25.136-106.652755.375
970.22130.1417-0.15450.2449-0.13340.27760.00040.00080.0011-0.0014-0.0016-0.00130.00020.00080.00120.0016-0.00620.00660.01550.01260.0148-121.8407122.4154179.9201
980.75350.10340.24510.2769-0.14310.08070.00110.01070.0001-0.00370.0055-0.00340.0078-0.0063-0.0066-0.0878-0.0526-0.05950.0205-0.00480.0434-149.636-82.8743-15.8507
990.037-0.1410.01180.1761-0.30610.32930.00030.00070.0010.0003-0.00040.0007-0.00140.00160.00010.01410.00460.0150.00860.00220.0057-96.7584163.9667162.7808
1000.5467-0.2422-0.33010.5672-0.20720-0.00330.0027-0.00080.00950.0040.0130.00040.0052-0.0007-0.08380.02050.07090.0043-0.00420.0465-138.1555-64.926430.8056
10100.5617-0.52670.42371.58450.5483-0.0011-0.00170.00140.0002-0.0002-0.0042-0.00360.00270.00130.0151-0.04960.01940.0188-0.05450.0164-9.2393178.8186135.9299
1020.4974-0.1447-0.19760.00510.51510.1208-0.0016-0.0078-0.0010.0092-0.003-0.0082-0.00320.00610.0047-0.0164-0.0194-0.04-0.0069-0.0721-0.0061-64.5373-25.233868.2653
1030.04420.10540.20780.01860.16690.16120.0004-0.00010.0008-0.0008-0.00030.00020.00090.0003-0.00010.0076-0.0066-0.01010.007-0.0090.001835.8948163.0841191.1928
1040.2387-0.70510.66670-0.04930-0.00010.0002-0.00320.0027-0.0018-0.0078-0.00060.00760.0019-0.02390.0273-0.07430.00220.0122-0.0109-6.7896-70.151960.7159
1050.3790.02790.25960-0.617400.0006-0.0039-0.0021-0.01090.0002-0.0037-0.0068-0.0025-0.0008-0.01690.0101-0.02780.01530.0415-0.0023-154.9389-70.851-76.5155
Refinement TLS group
IDRefine-IDRefine TLS-IDSelection detailsAuth asym-IDAuth seq-ID
1X-RAY DIFFRACTION1{ A|1 - A|2209 }A1 - 2209
2X-RAY DIFFRACTION2{ B|2 - B|1986 }B2 - 1986
3X-RAY DIFFRACTION3{ A|2304 - A|2601 }A2304 - 2601
4X-RAY DIFFRACTION4{ B|2304 - B|2527 }B2304 - 2527
5X-RAY DIFFRACTION5{ A|2602 - A|2906 }A2602 - 2906
6X-RAY DIFFRACTION6{ B|2602 - B|2807 }B2602 - 2807
7X-RAY DIFFRACTION7{ A|3002 - A|3302 }A3002 - 3302
8X-RAY DIFFRACTION8{ B|3002 - B|3312 }B3002 - 3312
9X-RAY DIFFRACTION9{ A|3410 - A|3605 }A3410 - 3605
10X-RAY DIFFRACTION10{ B|3410 - B|3601 }B3410 - 3601
11X-RAY DIFFRACTION11{ A|3701 - A|3901 }A3701 - 3901
12X-RAY DIFFRACTION12{ B|3701 - B|3902 }B3701 - 3902
13X-RAY DIFFRACTION13{ A|4002 - A|4201 }A4002 - 4201
14X-RAY DIFFRACTION14{ B|4002 - B|4152 }B4002 - 4152
15X-RAY DIFFRACTION15{ A|4202 - A|4401 }A4202 - 4401
16X-RAY DIFFRACTION16{ B|4202 - B|4330 }B4202 - 4330
17X-RAY DIFFRACTION17{ A|4404 - A|4530 }A4404 - 4530
18X-RAY DIFFRACTION18{ B|4404 - B|4530 }B4404 - 4530
19X-RAY DIFFRACTION19{ A|4604 - A|4802 }A4604 - 4802
20X-RAY DIFFRACTION20{ B|4605 - B|4702 }B4605 - 4702
21X-RAY DIFFRACTION21{ A|4813 - A|5006 }A4813 - 5006
22X-RAY DIFFRACTION22{ B|4813 - B|4929 }B4813 - 4929
23X-RAY DIFFRACTION23{ A|5102 - A|5410 }A5102 - 5410
24X-RAY DIFFRACTION24{ B|5102 - B|5305 }B5102 - 5305
25X-RAY DIFFRACTION25{ A|5502 - A|5804 }A5502 - 5804
26X-RAY DIFFRACTION26{ B|5502 - B|5615 }B5502 - 5615
27X-RAY DIFFRACTION27{ A|5902 - A|6106 }A5902 - 6106
28X-RAY DIFFRACTION28{ B|5902 - B|6103 }B5902 - 6103
29X-RAY DIFFRACTION29{ A|6202 - A|6302 }A6202 - 6302
30X-RAY DIFFRACTION30{ B|6202 - B|6301 }B6202 - 6301
31X-RAY DIFFRACTION31{ A|6401 - A|6502 }A6401 - 6502
32X-RAY DIFFRACTION32{ B|6401 - B|6503 }B6401 - 6503
33X-RAY DIFFRACTION33{ A|6504 - A|6583 }A6504 - 6583
34X-RAY DIFFRACTION34{ B|6504 - B|6583 }B6504 - 6583
35X-RAY DIFFRACTION35{ A|6620 - A|6674 }A6620 - 6674
36X-RAY DIFFRACTION36{ B|6620 - B|6674 }B6620 - 6674
37X-RAY DIFFRACTION37{ A|6703 - A|6801 }A6703 - 6801
38X-RAY DIFFRACTION38{ B|6703 - B|6781 }B6703 - 6781
39X-RAY DIFFRACTION39{ A|6802 - A|6902 }A6802 - 6902
40X-RAY DIFFRACTION40{ B|6803 - B|6905 }B6803 - 6905
41X-RAY DIFFRACTION41{ A|7002 - A|7102 }A7002 - 7102
42X-RAY DIFFRACTION42{ B|7002 - B|7102 }B7002 - 7102
43X-RAY DIFFRACTION43{ A|7202 - A|7259 }A7202 - 7259
44X-RAY DIFFRACTION44{ B|7202 - B|7425 }B7202 - 7425
45X-RAY DIFFRACTION45{ A|7502 - A|7557 }A7502 - 7557
46X-RAY DIFFRACTION46{ B|7502 - B|7747 }B7502 - 7747
47X-RAY DIFFRACTION47{ A|7804 - A|7853 }A7804 - 7853
48X-RAY DIFFRACTION48{ B|7804 - B|7909 }B7804 - 7909
49X-RAY DIFFRACTION49{ A|8001 - A|8202 }A8001 - 8202
50X-RAY DIFFRACTION50{ B|8001 - B|8225 }B8001 - 8225
51X-RAY DIFFRACTION51{ A|8302 - A|8401 }A8302 - 8401
52X-RAY DIFFRACTION52{ B|8302 - B|8438 }B8302 - 8438
53X-RAY DIFFRACTION53{ A|8501 - A|8601 }A8501 - 8601
54X-RAY DIFFRACTION54{ B|8501 - B|8714 }B8501 - 8714
55X-RAY DIFFRACTION55{ C|1 - C|3892 }C1 - 3892
56X-RAY DIFFRACTION56{ D|1 - D|8115 }D1 - 8115
57X-RAY DIFFRACTION57{ C|8202 - C|8513 }C8202 - 8513
58X-RAY DIFFRACTION58{ D|8201 - D|8709 }D8201 - 8709
59X-RAY DIFFRACTION59{ C|8802 - C|9108 }C8802 - 9108
60X-RAY DIFFRACTION60{ D|8802 - D|9206 }D8802 - 9206
61X-RAY DIFFRACTION61{ C|9301 - C|9606 }C9301 - 9606
62X-RAY DIFFRACTION62{ D|9301 - D|9803 }D9301 - 9803
63X-RAY DIFFRACTION63{ E|1 - E|306 }E1 - 306
64X-RAY DIFFRACTION64{ F|1 - F|462 }F1 - 462
65X-RAY DIFFRACTION65{ E|502 - E|678 }E502 - 678
66X-RAY DIFFRACTION66{ F|502 - F|714 }F502 - 714
67X-RAY DIFFRACTION67{ E|802 - E|977 }E802 - 977
68X-RAY DIFFRACTION68{ F|802 - F|1006 }F802 - 1006
69X-RAY DIFFRACTION69{ E|1101 - E|1249 }E1101 - 1249
70X-RAY DIFFRACTION70{ F|1101 - F|1302 }F1101 - 1302
71X-RAY DIFFRACTION71{ E|1308 - E|1441 }E1308 - 1441
72X-RAY DIFFRACTION72{ F|1308 - F|1441 }F1308 - 1441
73X-RAY DIFFRACTION73{ E|1501 - E|1701 }E1501 - 1701
74X-RAY DIFFRACTION74{ F|1501 - F|1859 }F1501 - 1859
75X-RAY DIFFRACTION75{ E|1901 - E|2101 }E1901 - 2101
76X-RAY DIFFRACTION76{ F|1901 - F|2245 }F1901 - 2245
77X-RAY DIFFRACTION77{ E|2301 - E|2605 }E2301 - 2605
78X-RAY DIFFRACTION78{ F|2301 - F|2667 }F2301 - 2667
79X-RAY DIFFRACTION79{ E|2701 - E|2836 }E2701 - 2836
80X-RAY DIFFRACTION80{ F|2701 - F|3074 }F2701 - 3074
81X-RAY DIFFRACTION81{ E|3101 - E|3301 }E3101 - 3301
82X-RAY DIFFRACTION82{ F|3101 - F|3342 }F3101 - 3342
83X-RAY DIFFRACTION83{ E|3402 - E|3517 }E3402 - 3517
84X-RAY DIFFRACTION84{ F|3401 - F|3737 }F3401 - 3737
85X-RAY DIFFRACTION85{ E|3802 - E|3915 }E3802 - 3915
86X-RAY DIFFRACTION86{ F|3802 - F|4127 }F3802 - 4127
87X-RAY DIFFRACTION87{ E|4202 - E|4318 }E4202 - 4318
88X-RAY DIFFRACTION88{ F|4202 - F|4567 }F4202 - 4567
89X-RAY DIFFRACTION89{ E|4601 - E|4801 }E4601 - 4801
90X-RAY DIFFRACTION90{ F|4601 - F|4950 }F4601 - 4950
91X-RAY DIFFRACTION91{ E|5001 - E|5110 }E5001 - 5110
92X-RAY DIFFRACTION92{ F|5001 - F|5361 }F5001 - 5361
93X-RAY DIFFRACTION93{ E|5401 - E|5502 }E5401 - 5502
94X-RAY DIFFRACTION94{ F|5401 - F|5619 }F5401 - 5619
95X-RAY DIFFRACTION95{ E|5702 - E|5902 }E5702 - 5902
96X-RAY DIFFRACTION96{ F|5702 - F|5922 }F5702 - 5922
97X-RAY DIFFRACTION97{ E|6001 - E|6101 }E6001 - 6101
98X-RAY DIFFRACTION98{ F|6001 - F|6132 }F6001 - 6132
99X-RAY DIFFRACTION99{ E|6211 - E|6285 }E6211 - 6285
100X-RAY DIFFRACTION100{ F|6210 - F|6330 }F6210 - 6330
101X-RAY DIFFRACTION101{ E|6402 - E|6501 }E6402 - 6501
102X-RAY DIFFRACTION102{ F|6402 - F|6510 }F6402 - 6510
103X-RAY DIFFRACTION103{ E|6602 - E|6663 }E6602 - 6663
104X-RAY DIFFRACTION104{ F|6602 - F|6708 }F6602 - 6708
105X-RAY DIFFRACTION105{ G|2 - G|136 }G2 - 136

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  • This is a major update changing the version number from 4 to 5, and with Remediation, in which all the entries are updated.
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  • Now, EM Navigator and Yorodumi are based on the updated data.

External links:wwPDB Remediation / Enriched Model Files Conforming to OneDep Data Standards Now Available in the PDB FTP Archive

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Yorodumi

Thousand views of thousand structures

  • Yorodumi is a browser for structure data from EMDB, PDB, SASBDB, etc.
  • This page is also the successor to EM Navigator detail page, and also detail information page/front-end page for Omokage search.
  • The word "yorodu" (or yorozu) is an old Japanese word meaning "ten thousand". "mi" (miru) is to see.

Related info.:EMDB / PDB / SASBDB / Comparison of 3 databanks / Yorodumi Search / Aug 31, 2016. New EM Navigator & Yorodumi / Yorodumi Papers / Jmol/JSmol / Function and homology information / Changes in new EM Navigator and Yorodumi

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