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Structure paper

TitleResistance mutations generate divergent antibiotic susceptibility profiles against translation inhibitors.
Journal, issue, pagesProc. Natl. Acad. Sci. USA, Vol. 113, Page 8188-8193, Year 2016
Publish dateMar 16, 2016 (structure data deposition date)
AuthorsCocozaki, A.I. / Altman, R.B. / Huang, J. / Buurman, E.T. / Kazmirski, S.L. / Doig, P. / Prince, D.B. / Blanchard, S.C. / Cate, J.H. / Ferguson, A.D.
External linksProc. Natl. Acad. Sci. USA / PubMed:27382179
MethodsX-ray diffraction
Resolution2.8 - 3.32 Å
Structure data

PDB-5it8:
High-resolution structure of the Escherichia coli ribosome
Method: X-RAY DIFFRACTION / Resolution: 3.12 Å

PDB-5j5b:
Structure of the WT E coli ribosome bound to tetracycline
Method: X-RAY DIFFRACTION / Resolution: 2.8 Å

PDB-5j7l:
Structure of the 70S E coli ribosome with the U1052G mutation in the 16S rRNA bound to tetracycline
Method: X-RAY DIFFRACTION / Resolution: 3 Å

PDB-5j88:
Structure of the E coli 70S ribosome with the U1060A mutation in 16S rRNA
Method: X-RAY DIFFRACTION / Resolution: 3.32 Å

PDB-5j8a:
Structure of the E coli 70S ribosome with the U1052G mutation in 16S rRNA bound to tigecycline
Method: X-RAY DIFFRACTION / Resolution: 3.1 Å

PDB-5j91:
Structure of the Wild-type 70S E coli ribosome bound to Tigecycline
Method: X-RAY DIFFRACTION / Resolution: 2.96 Å

PDB-5jc9:
Structure of the Escherichia coli ribosome with the U1052G mutation in the 16S rRNA
Method: X-RAY DIFFRACTION / Resolution: 3.03 Å

Chemicals

ChemComp-MG:
Unknown entry

ChemComp-PG4:
TETRAETHYLENE GLYCOL / precipitant*YM

ChemComp-MPD:
(4S)-2-METHYL-2,4-PENTANEDIOL / precipitant*YM

ChemComp-PUT:
1,4-DIAMINOBUTANE

ChemComp-ZN:
Unknown entry

ChemComp-PEG:
DI(HYDROXYETHYL)ETHER

ChemComp-EDO:
1,2-ETHANEDIOL

ChemComp-PGE:
TRIETHYLENE GLYCOL

ChemComp-SPD:
SPERMIDINE

ChemComp-1PE:
PENTAETHYLENE GLYCOL / precipitant*YM

ChemComp-ACY:
ACETIC ACID

ChemComp-GUN:
GUANINE

ChemComp-TRS:
2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL / pH buffer*YM

ChemComp-HOH:
WATER

ChemComp-TAC:
TETRACYCLINE / medication, antibiotic*YM

ChemComp-T1C:
TIGECYCLINE / medication, antibiotic*YM

Source
  • escherichia coli (strain k12) (bacteria)
  • escherichia coli (E. coli)
  • escherichia coli o139:h28 (strain e24377a / etec) (bacteria)
  • escherichia coli k-12 (bacteria)
KeywordsRIBOSOME / Protein biosynthesis / ribosomes / RNA / transfer / exit / peptidyl / 30S / 70S / 16S / ribosomal subunit / posttranscriptional modification / RIBOSOME/ANTIBIOTIC / escherichia coli / tetracycline / sq171 / RIBOSOME-ANTIBIOTIC complex / resistance / mutation / U1060A / negamycin / tigecycline / ribosome-inhibitor complex / U1052G / antibiotics

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