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- PDB-5j88: Structure of the E coli 70S ribosome with the U1060A mutation in ... -

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Basic information

Entry
Database: PDB / ID: 5j88
TitleStructure of the E coli 70S ribosome with the U1060A mutation in 16S rRNA
Components
  • (23S rRNA23S ribosomal RNA) x 2
  • (30S ribosomal protein ...) x 20
  • (50S ribosomal protein ...) x 31
  • 16S rRNA
  • 5S rRNA5S ribosomal RNA
Keywordsribosome/antibiotic / ribosome / U1060A / mutation / resistance / negamycin / ribosome-antibiotic complex
Function / homology
Function and homology information


stringent response / mRNA base-pairing translational repressor activity / ornithine decarboxylase inhibitor activity / misfolded RNA binding / transcription antitermination factor activity, RNA binding / Group I intron splicing / RNA folding / transcriptional attenuation / endoribonuclease inhibitor activity / RNA-binding transcription regulator activity ...stringent response / mRNA base-pairing translational repressor activity / ornithine decarboxylase inhibitor activity / misfolded RNA binding / transcription antitermination factor activity, RNA binding / Group I intron splicing / RNA folding / transcriptional attenuation / endoribonuclease inhibitor activity / RNA-binding transcription regulator activity / positive regulation of ribosome biogenesis / negative regulation of cytoplasmic translation / translational termination / DnaA-L2 complex / four-way junction DNA binding / translation repressor activity / negative regulation of translational initiation / negative regulation of DNA-templated DNA replication initiation / regulation of mRNA stability / ribosome assembly / mRNA regulatory element binding translation repressor activity / response to reactive oxygen species / assembly of large subunit precursor of preribosome / transcription elongation factor complex / positive regulation of RNA splicing / DNA endonuclease activity / : / cytosolic ribosome assembly / regulation of DNA-templated transcription elongation / transcription antitermination / regulation of cell growth / maintenance of translational fidelity / DNA-templated transcription termination / response to radiation / mRNA 5'-UTR binding / ribosomal small subunit biogenesis / small ribosomal subunit rRNA binding / ribosomal small subunit assembly / ribosomal large subunit assembly / cytosolic small ribosomal subunit / large ribosomal subunit rRNA binding / ribosome binding / large ribosomal subunit / ribosome biogenesis / regulation of translation / small ribosomal subunit / 5S rRNA binding / cytosolic large ribosomal subunit / cytoplasmic translation / transferase activity / tRNA binding / negative regulation of translation / rRNA binding / molecular adaptor activity / ribosome / structural constituent of ribosome / translation / response to antibiotic / mRNA binding / negative regulation of DNA-templated transcription / DNA binding / RNA binding / zinc ion binding / membrane / cytosol / cytoplasm
Similarity search - Function
Ribosomal protein L10, eubacterial, conserved site / Ribosomal protein L10 signature. / Ribosomal protein L10 / : / Ribosomal protein S21, conserved site / Ribosomal protein S21 signature. / Ribosomal protein L25, short-form / Ribosomal protein S14, bacterial/plastid / Ribosomal protein L11, bacterial-type / Ribosomal protein S21 superfamily ...Ribosomal protein L10, eubacterial, conserved site / Ribosomal protein L10 signature. / Ribosomal protein L10 / : / Ribosomal protein S21, conserved site / Ribosomal protein S21 signature. / Ribosomal protein L25, short-form / Ribosomal protein S14, bacterial/plastid / Ribosomal protein L11, bacterial-type / Ribosomal protein S21 superfamily / Ribosomal protein S21 / Ribosomal protein S16, conserved site / Ribosomal protein S16 signature. / Ribosomal protein S21 / Ribosomal protein L11, conserved site / Ribosomal protein L10-like domain superfamily / Ribosomal protein L21, conserved site / Ribosomal protein L21 signature. / Ribosomal protein L10P / Ribosomal protein L10 / Ribosomal protein L11 signature. / Ribosomal protein L16 signature 1. / : / Ribosomal protein L6, conserved site / Ribosomal protein L6 signature 1. / Ribosomal protein L16, conserved site / Ribosomal protein L16 signature 2. / Ribosomal protein L11, N-terminal / Ribosomal protein L17 signature. / Ribosomal protein L9 signature. / Ribosomal protein L9, bacteria/chloroplast / Ribosomal protein L9, C-terminal / Ribosomal protein L9, C-terminal domain / Ribosomal protein L9, C-terminal domain superfamily / Ribosomal protein L11/L12 / Ribosomal protein L11, C-terminal / Ribosomal protein L11, C-terminal domain superfamily / Ribosomal protein L11/L12, N-terminal domain superfamily / Ribosomal protein L11/L12 / Ribosomal protein L11, N-terminal domain / Ribosomal protein L11, RNA binding domain / Ribosomal L25p family / Ribosomal protein L25 / Ribosomal protein L28/L24 superfamily / Ribosomal protein L36 signature. / Ribosomal protein L25/Gln-tRNA synthetase, N-terminal / Ribosomal protein L32p, bacterial type / Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain superfamily / Ribosomal protein L9, N-terminal domain superfamily / Ribosomal protein L9 / Ribosomal protein L9, N-terminal / Ribosomal protein L9, N-terminal domain / Ribosomal protein L28 / Ribosomal protein L35, conserved site / Ribosomal protein L35 signature. / Ribosomal protein L33, conserved site / Ribosomal protein L33 signature. / Ribosomal protein L35, non-mitochondrial / Ribosomal protein L5, bacterial-type / Ribosomal protein L6, bacterial-type / Ribosomal protein L18, bacterial-type / Ribosomal protein L19, conserved site / Ribosomal protein L19 signature. / Ribosomal protein L36 / Ribosomal protein L36 superfamily / Ribosomal protein L36 / Ribosomal protein L9/RNase H1, N-terminal / Ribosomal protein L20 signature. / Ribosomal protein S3, bacterial-type / Ribosomal protein L27, conserved site / Ribosomal protein S6, conserved site / Ribosomal protein L27 signature. / Ribosomal protein S6 signature. / Ribosomal protein S19, bacterial-type / Ribosomal protein S7, bacterial/organellar-type / Ribosomal protein S11, bacterial-type / Ribosomal protein S13, bacterial-type / Ribosomal protein S20 / Ribosomal protein S20 superfamily / Ribosomal protein S20 / Ribosomal protein S9, bacterial/plastid / Ribosomal protein L14P, bacterial-type / Ribosomal protein S4, bacterial-type / Ribosomal protein L34, conserved site / Ribosomal protein L34 signature. / 30S ribosomal protein S17 / Ribosomal protein S5, bacterial-type / Ribosomal protein L22, bacterial/chloroplast-type / Ribosomal protein S6, plastid/chloroplast / Ribosomal protein L35 / Ribosomal protein L35 superfamily / Ribosomal protein L2, bacterial/organellar-type / Ribosomal protein L35 / Ribosomal protein S2, bacteria/mitochondria/plastid / Ribosomal L28 family / Ribosomal protein L33 / Ribosomal protein L33 / Ribosomal protein L28/L24 / Ribosomal protein L33 superfamily / :
Similarity search - Domain/homology
ACETIC ACID / GUANINE / DI(HYDROXYETHYL)ETHER / TRIETHYLENE GLYCOL / 1,4-DIAMINOBUTANE / SPERMIDINE / : / : / : / RNA ...ACETIC ACID / GUANINE / DI(HYDROXYETHYL)ETHER / TRIETHYLENE GLYCOL / 1,4-DIAMINOBUTANE / SPERMIDINE / : / : / : / RNA / RNA (> 10) / RNA (> 100) / RNA (> 1000) / Small ribosomal subunit protein bS6 / Small ribosomal subunit protein uS7 / Large ribosomal subunit protein uL15 / Large ribosomal subunit protein uL10 / Large ribosomal subunit protein uL11 / Large ribosomal subunit protein bL19 / Large ribosomal subunit protein bL20 / Large ribosomal subunit protein bL27 / Large ribosomal subunit protein bL28 / Large ribosomal subunit protein uL29 / Large ribosomal subunit protein bL32 / Large ribosomal subunit protein bL33 / Large ribosomal subunit protein bL34 / Large ribosomal subunit protein bL35 / Large ribosomal subunit protein bL36A / Large ribosomal subunit protein bL9 / Small ribosomal subunit protein uS10 / Small ribosomal subunit protein uS11 / Small ribosomal subunit protein uS12 / Small ribosomal subunit protein uS13 / Small ribosomal subunit protein bS16 / Small ribosomal subunit protein bS18 / Small ribosomal subunit protein uS19 / Small ribosomal subunit protein bS20 / Small ribosomal subunit protein uS2 / Small ribosomal subunit protein uS3 / Small ribosomal subunit protein uS4 / Small ribosomal subunit protein uS5 / Small ribosomal subunit protein uS8 / Small ribosomal subunit protein uS9 / Large ribosomal subunit protein uL13 / Large ribosomal subunit protein uL14 / Large ribosomal subunit protein uL16 / Large ribosomal subunit protein uL23 / Small ribosomal subunit protein uS15 / Large ribosomal subunit protein bL17 / Large ribosomal subunit protein bL21 / Large ribosomal subunit protein uL30 / Large ribosomal subunit protein uL6 / Small ribosomal subunit protein uS14 / Small ribosomal subunit protein uS17 / Large ribosomal subunit protein uL18 / Large ribosomal subunit protein uL2 / Large ribosomal subunit protein uL3 / Large ribosomal subunit protein uL24 / Large ribosomal subunit protein uL4 / Large ribosomal subunit protein uL22 / Large ribosomal subunit protein uL5 / Small ribosomal subunit protein bS21 / Large ribosomal subunit protein bL25
Similarity search - Component
Biological speciesEscherichia coli (E. coli)
MethodX-RAY DIFFRACTION / SYNCHROTRON / Resolution: 3.32 Å
AuthorsCocozaki, A. / Ferguson, A.
CitationJournal: Proc.Natl.Acad.Sci.USA / Year: 2016
Title: Resistance mutations generate divergent antibiotic susceptibility profiles against translation inhibitors.
Authors: Cocozaki, A.I. / Altman, R.B. / Huang, J. / Buurman, E.T. / Kazmirski, S.L. / Doig, P. / Prince, D.B. / Blanchard, S.C. / Cate, J.H. / Ferguson, A.D.
History
DepositionApr 7, 2016Deposition site: RCSB / Processing site: RCSB
Revision 1.0Jul 6, 2016Provider: repository / Type: Initial release
Revision 1.1Jul 20, 2016Group: Structure summary
Revision 1.2Aug 3, 2016Group: Database references
Revision 1.3Dec 7, 2016Group: Other

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Structure visualization

Structure viewerMolecule:
MolmilJmol/JSmol

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Assembly

Deposited unit
AA: 16S rRNA
AB: 30S ribosomal protein S2
AC: 30S ribosomal protein S3
AD: 30S ribosomal protein S4
AE: 30S ribosomal protein S5
AF: 30S ribosomal protein S6
AG: 30S ribosomal protein S7
AH: 30S ribosomal protein S8
AI: 30S ribosomal protein S9
AJ: 30S ribosomal protein S10
AK: 30S ribosomal protein S11
AL: 30S ribosomal protein S12
AM: 30S ribosomal protein S13
AN: 30S ribosomal protein S14
AO: 30S ribosomal protein S15
AP: 30S ribosomal protein S16
AQ: 30S ribosomal protein S17
AR: 30S ribosomal protein S18
AS: 30S ribosomal protein S19
AT: 30S ribosomal protein S20
AU: 30S ribosomal protein S21
C1: 50S ribosomal protein L32
C2: 50S ribosomal protein L33
C3: 50S ribosomal protein L34
C4: 50S ribosomal protein L35
C5: 50S ribosomal protein L36
C0: 50S ribosomal protein L30
BA: 16S rRNA
BB: 30S ribosomal protein S2
BC: 30S ribosomal protein S3
BD: 30S ribosomal protein S4
BE: 30S ribosomal protein S5
BF: 30S ribosomal protein S6
BG: 30S ribosomal protein S7
BH: 30S ribosomal protein S8
BI: 30S ribosomal protein S9
BJ: 30S ribosomal protein S10
BK: 30S ribosomal protein S11
BL: 30S ribosomal protein S12
BM: 30S ribosomal protein S13
BN: 30S ribosomal protein S14
BO: 30S ribosomal protein S15
BP: 30S ribosomal protein S16
BQ: 30S ribosomal protein S17
BR: 30S ribosomal protein S18
BS: 30S ribosomal protein S19
BT: 30S ribosomal protein S20
BU: 30S ribosomal protein S21
D1: 50S ribosomal protein L32
D2: 50S ribosomal protein L33
D3: 50S ribosomal protein L34
D4: 50S ribosomal protein L35
D5: 50S ribosomal protein L36
D0: 50S ribosomal protein L30
CB: 5S rRNA
CC: 50S ribosomal protein L2
CD: 50S ribosomal protein L3
CA: 23S rRNA
DC: 50S ribosomal protein L2
DD: 50S ribosomal protein L3
CE: 50S ribosomal protein L4
CF: 50S ribosomal protein L5
CG: 50S ribosomal protein L6
CH: 50S ribosomal protein L9
CJ: 50S ribosomal protein L11
CK: 50S ribosomal protein L13
CL: 50S ribosomal protein L14
CM: 50S ribosomal protein L15
CN: 50S ribosomal protein L16
CO: 50S ribosomal protein L17
CP: 50S ribosomal protein L18
CQ: 50S ribosomal protein L19
CR: 50S ribosomal protein L20
CS: 50S ribosomal protein L21
CT: 50S ribosomal protein L22
CU: 50S ribosomal protein L23
CV: 50S ribosomal protein L24
CW: 50S ribosomal protein L25
CX: 50S ribosomal protein L27
CY: 50S ribosomal protein L28
CZ: 50S ribosomal protein L29
DE: 50S ribosomal protein L4
DF: 50S ribosomal protein L5
DG: 50S ribosomal protein L6
DH: 50S ribosomal protein L9
DJ: 50S ribosomal protein L11
DK: 50S ribosomal protein L13
DL: 50S ribosomal protein L14
DM: 50S ribosomal protein L15
DN: 50S ribosomal protein L16
DO: 50S ribosomal protein L17
DP: 50S ribosomal protein L18
DQ: 50S ribosomal protein L19
DR: 50S ribosomal protein L20
DS: 50S ribosomal protein L21
DT: 50S ribosomal protein L22
DU: 50S ribosomal protein L23
DV: 50S ribosomal protein L24
DW: 50S ribosomal protein L25
DX: 50S ribosomal protein L27
DY: 50S ribosomal protein L28
DZ: 50S ribosomal protein L29
DI: 50S ribosomal protein L10
DB: 5S rRNA
DA: 23S rRNA
hetero molecules


Theoretical massNumber of molelcules
Total (without water)4,276,429654
Polymers4,255,707105
Non-polymers20,721549
Water139,5807748
1
AA: 16S rRNA
AB: 30S ribosomal protein S2
AC: 30S ribosomal protein S3
AD: 30S ribosomal protein S4
AE: 30S ribosomal protein S5
AF: 30S ribosomal protein S6
AG: 30S ribosomal protein S7
AH: 30S ribosomal protein S8
AI: 30S ribosomal protein S9
AJ: 30S ribosomal protein S10
AK: 30S ribosomal protein S11
AL: 30S ribosomal protein S12
AM: 30S ribosomal protein S13
AN: 30S ribosomal protein S14
AO: 30S ribosomal protein S15
AP: 30S ribosomal protein S16
AQ: 30S ribosomal protein S17
AR: 30S ribosomal protein S18
AS: 30S ribosomal protein S19
AT: 30S ribosomal protein S20
AU: 30S ribosomal protein S21
D1: 50S ribosomal protein L32
D2: 50S ribosomal protein L33
D3: 50S ribosomal protein L34
D4: 50S ribosomal protein L35
D5: 50S ribosomal protein L36
D0: 50S ribosomal protein L30
DC: 50S ribosomal protein L2
DD: 50S ribosomal protein L3
DE: 50S ribosomal protein L4
DF: 50S ribosomal protein L5
DG: 50S ribosomal protein L6
DH: 50S ribosomal protein L9
DJ: 50S ribosomal protein L11
DK: 50S ribosomal protein L13
DL: 50S ribosomal protein L14
DM: 50S ribosomal protein L15
DN: 50S ribosomal protein L16
DO: 50S ribosomal protein L17
DP: 50S ribosomal protein L18
DQ: 50S ribosomal protein L19
DR: 50S ribosomal protein L20
DS: 50S ribosomal protein L21
DT: 50S ribosomal protein L22
DU: 50S ribosomal protein L23
DV: 50S ribosomal protein L24
DW: 50S ribosomal protein L25
DX: 50S ribosomal protein L27
DY: 50S ribosomal protein L28
DZ: 50S ribosomal protein L29
DI: 50S ribosomal protein L10
DB: 5S rRNA
DA: 23S rRNA
hetero molecules


Theoretical massNumber of molelcules
Total (without water)2,150,747400
Polymers2,135,14653
Non-polymers15,601347
Water84747
TypeNameSymmetry operationNumber
identity operation1_555x,y,z1
2
C1: 50S ribosomal protein L32
C2: 50S ribosomal protein L33
C3: 50S ribosomal protein L34
C4: 50S ribosomal protein L35
C5: 50S ribosomal protein L36
C0: 50S ribosomal protein L30
BA: 16S rRNA
BB: 30S ribosomal protein S2
BC: 30S ribosomal protein S3
BD: 30S ribosomal protein S4
BE: 30S ribosomal protein S5
BF: 30S ribosomal protein S6
BG: 30S ribosomal protein S7
BH: 30S ribosomal protein S8
BI: 30S ribosomal protein S9
BJ: 30S ribosomal protein S10
BK: 30S ribosomal protein S11
BL: 30S ribosomal protein S12
BM: 30S ribosomal protein S13
BN: 30S ribosomal protein S14
BO: 30S ribosomal protein S15
BP: 30S ribosomal protein S16
BQ: 30S ribosomal protein S17
BR: 30S ribosomal protein S18
BS: 30S ribosomal protein S19
BT: 30S ribosomal protein S20
BU: 30S ribosomal protein S21
CB: 5S rRNA
CC: 50S ribosomal protein L2
CD: 50S ribosomal protein L3
CA: 23S rRNA
CE: 50S ribosomal protein L4
CF: 50S ribosomal protein L5
CG: 50S ribosomal protein L6
CH: 50S ribosomal protein L9
CJ: 50S ribosomal protein L11
CK: 50S ribosomal protein L13
CL: 50S ribosomal protein L14
CM: 50S ribosomal protein L15
CN: 50S ribosomal protein L16
CO: 50S ribosomal protein L17
CP: 50S ribosomal protein L18
CQ: 50S ribosomal protein L19
CR: 50S ribosomal protein L20
CS: 50S ribosomal protein L21
CT: 50S ribosomal protein L22
CU: 50S ribosomal protein L23
CV: 50S ribosomal protein L24
CW: 50S ribosomal protein L25
CX: 50S ribosomal protein L27
CY: 50S ribosomal protein L28
CZ: 50S ribosomal protein L29
hetero molecules


Theoretical massNumber of molelcules
Total (without water)2,125,682254
Polymers2,120,56152
Non-polymers5,121202
Water45025
TypeNameSymmetry operationNumber
identity operation1_555x,y,z1
Unit cell
Length a, b, c (Å)211.550, 433.650, 622.030
Angle α, β, γ (deg.)90.000, 90.000, 90.000
Int Tables number19
Space group name H-MP212121

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Components

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RNA chain , 4 types, 6 molecules AABACBDBCADA

#1: RNA chain 16S rRNA /


Mass: 497428.969 Da / Num. of mol.: 2
Source method: isolated from a genetically manipulated source
Source: (gene. exp.) Escherichia coli (E. coli) / Production host: Escherichia coli (E. coli) / References: GenBank: 675819282
#28: RNA chain 5S rRNA / 5S ribosomal RNA


Mass: 38790.090 Da / Num. of mol.: 2
Source method: isolated from a genetically manipulated source
Source: (gene. exp.) Escherichia coli (E. coli) / Production host: Escherichia coli (E. coli) / References: GenBank: 937521852
#31: RNA chain 23S rRNA / 23S ribosomal RNA


Mass: 941810.562 Da / Num. of mol.: 1
Source method: isolated from a genetically manipulated source
Source: (gene. exp.) Escherichia coli (E. coli) / Production host: Escherichia coli (E. coli) / References: GenBank: 42756
#55: RNA chain 23S rRNA / 23S ribosomal RNA


Mass: 941812.562 Da / Num. of mol.: 1
Source method: isolated from a genetically manipulated source
Source: (gene. exp.) Escherichia coli (E. coli) / Production host: Escherichia coli (E. coli) / References: GenBank: 42756

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30S ribosomal protein ... , 20 types, 40 molecules ABBBACBCADBDAEBEAFBFAGBGAHBHAIBIAJBJAKBKALBLAMBMANBNAOBOAPBP...

#2: Protein 30S ribosomal protein S2 /


Mass: 24971.764 Da / Num. of mol.: 2 / Source method: isolated from a natural source / Source: (natural) Escherichia coli (strain K12) (bacteria) / Strain: K12 / References: UniProt: P0A7V0
#3: Protein 30S ribosomal protein S3 /


Mass: 23078.785 Da / Num. of mol.: 2 / Source method: isolated from a natural source / Source: (natural) Escherichia coli (strain K12) (bacteria) / Strain: K12 / References: UniProt: P0A7V3
#4: Protein 30S ribosomal protein S4 /


Mass: 23383.002 Da / Num. of mol.: 2 / Source method: isolated from a natural source / Source: (natural) Escherichia coli (strain K12) (bacteria) / Strain: K12 / References: UniProt: P0A7V8
#5: Protein 30S ribosomal protein S5 /


Mass: 16361.878 Da / Num. of mol.: 2 / Source method: isolated from a natural source / Source: (natural) Escherichia coli (strain K12) (bacteria) / Strain: K12 / References: UniProt: P0A7W1
#6: Protein 30S ribosomal protein S6 /


Mass: 12326.251 Da / Num. of mol.: 2 / Source method: isolated from a natural source / Source: (natural) Escherichia coli (strain K12) (bacteria) / Strain: K12 / References: UniProt: P02358
#7: Protein 30S ribosomal protein S7 /


Mass: 16861.523 Da / Num. of mol.: 2 / Source method: isolated from a natural source / Source: (natural) Escherichia coli (strain K12) (bacteria) / Strain: K12 / References: UniProt: P02359
#8: Protein 30S ribosomal protein S8 /


Mass: 14015.361 Da / Num. of mol.: 2 / Source method: isolated from a natural source / Source: (natural) Escherichia coli (strain K12) (bacteria) / Strain: K12 / References: UniProt: P0A7W7
#9: Protein 30S ribosomal protein S9 /


Mass: 14554.882 Da / Num. of mol.: 2 / Source method: isolated from a natural source / Source: (natural) Escherichia coli (strain K12) (bacteria) / Strain: K12 / References: UniProt: P0A7X3
#10: Protein 30S ribosomal protein S10 /


Mass: 11325.117 Da / Num. of mol.: 2 / Source method: isolated from a natural source / Source: (natural) Escherichia coli (strain K12) (bacteria) / Strain: K12 / References: UniProt: P0A7R5
#11: Protein 30S ribosomal protein S11 /


Mass: 13870.975 Da / Num. of mol.: 2 / Source method: isolated from a natural source / Source: (natural) Escherichia coli (strain K12) (bacteria) / Strain: K12 / References: UniProt: P0A7R9
#12: Protein 30S ribosomal protein S12 /


Mass: 13683.053 Da / Num. of mol.: 2 / Source method: isolated from a natural source / Source: (natural) Escherichia coli (strain K12) (bacteria) / Strain: K12 / References: UniProt: P0A7S3
#13: Protein 30S ribosomal protein S13 /


Mass: 12625.753 Da / Num. of mol.: 2 / Source method: isolated from a natural source / Source: (natural) Escherichia coli (strain K12) (bacteria) / Strain: K12 / References: UniProt: P0A7S9
#14: Protein 30S ribosomal protein S14 /


Mass: 11475.364 Da / Num. of mol.: 2 / Source method: isolated from a natural source / Source: (natural) Escherichia coli (strain K12) (bacteria) / Strain: K12 / References: UniProt: P0AG59
#15: Protein 30S ribosomal protein S15 /


Mass: 10159.621 Da / Num. of mol.: 2 / Source method: isolated from a natural source / Source: (natural) Escherichia coli (strain K12) (bacteria) / Strain: K12 / References: UniProt: P0ADZ4
#16: Protein 30S ribosomal protein S16 /


Mass: 9207.572 Da / Num. of mol.: 2 / Source method: isolated from a natural source / Source: (natural) Escherichia coli (strain K12) (bacteria) / Strain: K12 / References: UniProt: P0A7T3
#17: Protein 30S ribosomal protein S17 /


Mass: 9263.946 Da / Num. of mol.: 2 / Source method: isolated from a natural source / Source: (natural) Escherichia coli (strain K12) (bacteria) / Strain: K12 / References: UniProt: P0AG63
#18: Protein 30S ribosomal protein S18 /


Mass: 6466.477 Da / Num. of mol.: 2 / Source method: isolated from a natural source / Source: (natural) Escherichia coli (strain K12) (bacteria) / Strain: K12 / References: UniProt: P0A7T7
#19: Protein 30S ribosomal protein S19 /


Mass: 9057.626 Da / Num. of mol.: 2 / Source method: isolated from a natural source / Source: (natural) Escherichia coli (strain K12) (bacteria) / Strain: K12 / References: UniProt: P0A7U3
#20: Protein 30S ribosomal protein S20 /


Mass: 9577.268 Da / Num. of mol.: 2 / Source method: isolated from a natural source / Source: (natural) Escherichia coli (strain K12) (bacteria) / Strain: K12 / References: UniProt: P0A7U7
#21: Protein 30S ribosomal protein S21 /


Mass: 6629.744 Da / Num. of mol.: 2 / Source method: isolated from a natural source / Source: (natural) Escherichia coli (strain K12) (bacteria) / Strain: K12 / References: UniProt: P68679

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50S ribosomal protein ... , 31 types, 59 molecules C1D1C2D2C3D3C4D4C5D5C0D0CCDCCDDDCEDECFDFCGDGCHDHCJDJCKDKCLDL...

#22: Protein 50S ribosomal protein L32 /


Mass: 6332.249 Da / Num. of mol.: 2 / Source method: isolated from a natural source / Source: (natural) Escherichia coli (strain K12) (bacteria) / Strain: K12 / References: UniProt: P0A7N4
#23: Protein 50S ribosomal protein L33 /


Mass: 5928.000 Da / Num. of mol.: 2 / Source method: isolated from a natural source / Source: (natural) Escherichia coli (strain K12) (bacteria) / Strain: K12 / References: UniProt: P0A7N9
#24: Protein/peptide 50S ribosomal protein L34 /


Mass: 5397.463 Da / Num. of mol.: 2 / Source method: isolated from a natural source / Source: (natural) Escherichia coli (strain K12) (bacteria) / Strain: K12 / References: UniProt: P0A7P5
#25: Protein 50S ribosomal protein L35 / / Ribosomal protein A


Mass: 7181.835 Da / Num. of mol.: 2 / Source method: isolated from a natural source / Source: (natural) Escherichia coli (strain K12) (bacteria) / Strain: K12 / References: UniProt: P0A7Q1
#26: Protein/peptide 50S ribosomal protein L36 / / Ribosomal protein B


Mass: 4377.390 Da / Num. of mol.: 2 / Source method: isolated from a natural source / Source: (natural) Escherichia coli (strain K12) (bacteria) / Strain: K12 / References: UniProt: P0A7Q6
#27: Protein 50S ribosomal protein L30 /


Mass: 6423.625 Da / Num. of mol.: 2 / Source method: isolated from a natural source / Source: (natural) Escherichia coli (strain K12) (bacteria) / Strain: K12 / References: UniProt: P0AG51
#29: Protein 50S ribosomal protein L2 /


Mass: 29792.424 Da / Num. of mol.: 2 / Source method: isolated from a natural source / Source: (natural) Escherichia coli (strain K12) (bacteria) / Strain: K12 / References: UniProt: P60422
#30: Protein 50S ribosomal protein L3 /


Mass: 22277.535 Da / Num. of mol.: 1 / Source method: isolated from a natural source / Source: (natural) Escherichia coli (strain K12) (bacteria) / Strain: K12 / References: UniProt: P60438
#32: Protein 50S ribosomal protein L3 /


Mass: 22291.562 Da / Num. of mol.: 1 / Source method: isolated from a natural source / Source: (natural) Escherichia coli (strain K12) (bacteria) / Strain: K12 / References: UniProt: P60438
#33: Protein 50S ribosomal protein L4 /


Mass: 22121.566 Da / Num. of mol.: 2 / Source method: isolated from a natural source / Source: (natural) Escherichia coli (strain K12) (bacteria) / Strain: K12 / References: UniProt: P60723
#34: Protein 50S ribosomal protein L5 /


Mass: 20202.416 Da / Num. of mol.: 2 / Source method: isolated from a natural source / Source: (natural) Escherichia coli (strain K12) (bacteria) / Strain: K12 / References: UniProt: P62399
#35: Protein 50S ribosomal protein L6 /


Mass: 18801.598 Da / Num. of mol.: 2 / Source method: isolated from a natural source / Source: (natural) Escherichia coli (strain K12) (bacteria) / Strain: K12 / References: UniProt: P0AG55
#36: Protein 50S ribosomal protein L9 /


Mass: 15789.020 Da / Num. of mol.: 2 / Source method: isolated from a natural source / Source: (natural) Escherichia coli (strain K12) (bacteria) / Strain: K12 / References: UniProt: P0A7R1
#37: Protein 50S ribosomal protein L11 /


Mass: 14135.391 Da / Num. of mol.: 2 / Source method: isolated from a natural source / Source: (natural) Escherichia coli (strain K12) (bacteria) / Strain: K12 / References: UniProt: P0A7J7
#38: Protein 50S ribosomal protein L13 /


Mass: 16050.606 Da / Num. of mol.: 2 / Source method: isolated from a natural source / Source: (natural) Escherichia coli (strain K12) (bacteria) / Strain: K12 / References: UniProt: P0AA10
#39: Protein 50S ribosomal protein L14 /


Mass: 13565.067 Da / Num. of mol.: 2 / Source method: isolated from a natural source / Source: (natural) Escherichia coli (strain K12) (bacteria) / Strain: K12 / References: UniProt: P0ADY3
#40: Protein 50S ribosomal protein L15 /


Mass: 15008.471 Da / Num. of mol.: 2 / Source method: isolated from a natural source / Source: (natural) Escherichia coli (strain K12) (bacteria) / Strain: K12 / References: UniProt: P02413
#41: Protein 50S ribosomal protein L16 /


Mass: 15327.261 Da / Num. of mol.: 2 / Source method: isolated from a natural source / Source: (natural) Escherichia coli (strain K12) (bacteria) / Strain: K12 / References: UniProt: P0ADY7
#42: Protein 50S ribosomal protein L17 /


Mass: 14393.657 Da / Num. of mol.: 2 / Source method: isolated from a natural source / Source: (natural) Escherichia coli (strain K12) (bacteria) / Strain: K12 / References: UniProt: P0AG44
#43: Protein 50S ribosomal protein L18 /


Mass: 12794.668 Da / Num. of mol.: 2 / Source method: isolated from a natural source / Source: (natural) Escherichia coli (strain K12) (bacteria) / Strain: K12 / References: UniProt: P0C018
#44: Protein 50S ribosomal protein L19 /


Mass: 13028.082 Da / Num. of mol.: 2 / Source method: isolated from a natural source / Source: (natural) Escherichia coli (strain K12) (bacteria) / Strain: K12 / References: UniProt: P0A7K6
#45: Protein 50S ribosomal protein L20 /


Mass: 13396.828 Da / Num. of mol.: 2 / Source method: isolated from a natural source / Source: (natural) Escherichia coli (strain K12) (bacteria) / Strain: K12 / References: UniProt: P0A7L3
#46: Protein 50S ribosomal protein L21 /


Mass: 11586.374 Da / Num. of mol.: 2 / Source method: isolated from a natural source / Source: (natural) Escherichia coli (strain K12) (bacteria) / Strain: K12 / References: UniProt: P0AG48
#47: Protein 50S ribosomal protein L22 /


Mass: 12253.359 Da / Num. of mol.: 2 / Source method: isolated from a natural source / Source: (natural) Escherichia coli (strain K12) (bacteria) / Strain: K12 / References: UniProt: P61175
#48: Protein 50S ribosomal protein L23 /


Mass: 11222.160 Da / Num. of mol.: 2 / Source method: isolated from a natural source / Source: (natural) Escherichia coli (strain K12) (bacteria) / Strain: K12 / References: UniProt: P0ADZ0
#49: Protein 50S ribosomal protein L24 /


Mass: 11208.054 Da / Num. of mol.: 2 / Source method: isolated from a natural source / Source: (natural) Escherichia coli (strain K12) (bacteria) / Strain: K12 / References: UniProt: P60624
#50: Protein 50S ribosomal protein L25 /


Mass: 10713.465 Da / Num. of mol.: 2 / Source method: isolated from a natural source / Source: (natural) Escherichia coli (strain K12) (bacteria) / Strain: K12 / References: UniProt: P68919
#51: Protein 50S ribosomal protein L27 /


Mass: 8275.498 Da / Num. of mol.: 2 / Source method: isolated from a natural source / Source: (natural) Escherichia coli (strain K12) (bacteria) / Strain: K12 / References: UniProt: P0A7L8
#52: Protein 50S ribosomal protein L28 /


Mass: 8896.354 Da / Num. of mol.: 2 / Source method: isolated from a natural source / Source: (natural) Escherichia coli (strain K12) (bacteria) / Strain: K12 / References: UniProt: P0A7M2
#53: Protein 50S ribosomal protein L29 /


Mass: 7155.267 Da / Num. of mol.: 2 / Source method: isolated from a natural source / Source: (natural) Escherichia coli (strain K12) (bacteria) / Strain: K12 / References: UniProt: P0A7M6
#54: Protein 50S ribosomal protein L10 / / 50S ribosomal protein L8


Mass: 14568.748 Da / Num. of mol.: 1 / Source method: isolated from a natural source / Source: (natural) Escherichia coli (strain K12) (bacteria) / Strain: K12 / References: UniProt: P0A7J3

-
Non-polymers , 14 types, 8297 molecules

#56: Chemical...
ChemComp-MG / MAGNESIUM ION


Mass: 24.305 Da / Num. of mol.: 466 / Source method: obtained synthetically / Formula: Mg
#57: Chemical
ChemComp-PG4 / TETRAETHYLENE GLYCOL / Polyethylene glycol


Mass: 194.226 Da / Num. of mol.: 7 / Source method: obtained synthetically / Formula: C8H18O5 / Comment: precipitant*YM
#58: Chemical
ChemComp-MPD / (4S)-2-METHYL-2,4-PENTANEDIOL / 2-Methyl-2,4-pentanediol


Mass: 118.174 Da / Num. of mol.: 14 / Source method: obtained synthetically / Formula: C6H14O2 / Comment: precipitant*YM
#59: Chemical
ChemComp-PUT / 1,4-DIAMINOBUTANE / PUTRESCINE / Putrescine


Mass: 88.151 Da / Num. of mol.: 16 / Source method: obtained synthetically / Formula: C4H12N2
#60: Chemical ChemComp-ZN / ZINC ION


Mass: 65.409 Da / Num. of mol.: 3 / Source method: obtained synthetically / Formula: Zn
#61: Chemical
ChemComp-PEG / DI(HYDROXYETHYL)ETHER / Diethylene glycol


Mass: 106.120 Da / Num. of mol.: 11 / Source method: obtained synthetically / Formula: C4H10O3
#62: Chemical
ChemComp-EDO / 1,2-ETHANEDIOL / ETHYLENE GLYCOL / Ethylene glycol


Mass: 62.068 Da / Num. of mol.: 12 / Source method: obtained synthetically / Formula: C2H6O2
#63: Chemical
ChemComp-PGE / TRIETHYLENE GLYCOL / Polyethylene glycol


Mass: 150.173 Da / Num. of mol.: 9 / Source method: obtained synthetically / Formula: C6H14O4
#64: Chemical
ChemComp-SPD / SPERMIDINE / N-(2-AMINO-PROPYL)-1,4-DIAMINOBUTANE / PA(34) / Spermidine


Mass: 145.246 Da / Num. of mol.: 4 / Source method: obtained synthetically / Formula: C7H19N3
#65: Chemical ChemComp-1PE / PENTAETHYLENE GLYCOL / PEG400 / Polyethylene glycol


Mass: 238.278 Da / Num. of mol.: 2 / Source method: obtained synthetically / Formula: C10H22O6 / Comment: precipitant*YM
#66: Chemical ChemComp-ACY / ACETIC ACID / Acetic acid


Mass: 60.052 Da / Num. of mol.: 3 / Source method: obtained synthetically / Formula: C2H4O2
#67: Chemical ChemComp-GUN / GUANINE / Guanine


Mass: 151.126 Da / Num. of mol.: 1 / Source method: obtained synthetically / Formula: C5H5N5O
#68: Chemical ChemComp-TRS / 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL / TRIS BUFFER / Tris


Mass: 122.143 Da / Num. of mol.: 1 / Source method: obtained synthetically / Formula: C4H12NO3 / Comment: pH buffer*YM
#69: Water ChemComp-HOH / water / Water


Mass: 18.015 Da / Num. of mol.: 7748 / Source method: isolated from a natural source / Formula: H2O

-
Experimental details

-
Experiment

ExperimentMethod: X-RAY DIFFRACTION / Number of used crystals: 1

-
Sample preparation

CrystalDensity Matthews: 3.36 Å3/Da / Density % sol: 63.39 %
Crystal growTemperature: 291 K / Method: microbatch
Details: PEG 8k, Spermidine, Putrescine, Ammonium Chloride, Magnesium Chloride, MES pH 6.5

-
Data collection

DiffractionMean temperature: 100 K
Diffraction sourceSource: SYNCHROTRON / Site: APS / Beamline: 17-ID / Wavelength: 1 Å
DetectorType: DECTRIS PILATUS 6M / Detector: PIXEL / Date: Apr 25, 2014
RadiationProtocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray
Radiation wavelengthWavelength: 1 Å / Relative weight: 1
ReflectionResolution: 3.316→48.377 Å / Num. obs: 767822 / % possible obs: 91.8 % / Redundancy: 4.7 % / Net I/σ(I): 127.3

-
Processing

Software
NameVersionClassification
Aimlessdata scaling
BUSTER-TNT2.11.6refinement
PDB_EXTRACT3.2data extraction
XDSdata reduction
BUSTERphasing
RefinementResolution: 3.32→48.13 Å / Cor.coef. Fo:Fc: 0.93 / Cor.coef. Fo:Fc free: 0.894 / Rfactor Rfree error: 0 / Cross valid method: THROUGHOUT / σ(F): 0 / SU Rfree Blow DPI: 0.505
RfactorNum. reflection% reflectionSelection details
Rfree0.219 2784 0.4 %RANDOM
Rwork0.176 ---
obs0.176 694082 83.3 %-
Displacement parametersBiso max: 300 Å2 / Biso mean: 145.07 Å2 / Biso min: 9.53 Å2
Baniso -1Baniso -2Baniso -3
1-5.3801 Å20 Å20 Å2
2--3.7307 Å20 Å2
3----9.1108 Å2
Refine analyzeLuzzati coordinate error obs: 0.38 Å
Refinement stepCycle: final / Resolution: 3.32→48.13 Å
ProteinNucleic acidLigandSolventTotal
Num. atoms90649 195378 1086 7748 294861
Biso mean--117.2 75.59 -
Num. residues----20707
Refine LS restraints
Refine-IDTypeNumberRestraint functionWeightDev ideal
X-RAY DIFFRACTIONt_dihedral_angle_d80730SINUSOIDAL2
X-RAY DIFFRACTIONt_trig_c_planes2047HARMONIC2
X-RAY DIFFRACTIONt_gen_planes23367HARMONIC5
X-RAY DIFFRACTIONt_it311538HARMONIC20
X-RAY DIFFRACTIONt_nbd75SEMIHARMONIC5
X-RAY DIFFRACTIONt_improper_torsion
X-RAY DIFFRACTIONt_pseud_angle
X-RAY DIFFRACTIONt_chiral_improper_torsion48412SEMIHARMONIC5
X-RAY DIFFRACTIONt_sum_occupancies
X-RAY DIFFRACTIONt_utility_distance1776HARMONIC1
X-RAY DIFFRACTIONt_utility_angle3173HARMONIC1
X-RAY DIFFRACTIONt_utility_torsion
X-RAY DIFFRACTIONt_ideal_dist_contact331272SEMIHARMONIC4
X-RAY DIFFRACTIONt_bond_d311538HARMONIC20.01
X-RAY DIFFRACTIONt_angle_deg465604HARMONIC20.87
X-RAY DIFFRACTIONt_omega_torsion2.4
X-RAY DIFFRACTIONt_other_torsion22.43
LS refinement shellResolution: 3.32→3.41 Å / Total num. of bins used: 20
RfactorNum. reflection% reflection
Rfree0.304 116 0.41 %
Rwork0.229 27954 -
all-28070 -
obs--45.73 %
Refinement TLS params.

Method: refined / Refine-ID: X-RAY DIFFRACTION

IDL11 (°2)L12 (°2)L13 (°2)L22 (°2)L23 (°2)L33 (°2)S11 (Å °)S12 (Å °)S13 (Å °)S21 (Å °)S22 (Å °)S23 (Å °)S31 (Å °)S32 (Å °)S33 (Å °)T11 (Å2)T12 (Å2)T13 (Å2)T22 (Å2)T23 (Å2)T33 (Å2)Origin x (Å)Origin y (Å)Origin z (Å)
10.1376-0.1837-0.08020.3718-0.09660.0919-0.00860.07650.0879-0.1620.00760.104-0.226-0.08660.0010.08110.1994-0.1939-0.2420.06960.3107-87.380725.1588-36.0374
20.1977-0.0873-0.06910.66080.10810.5972-0.03510.0964-0.1703-0.17960.04970.3791-0.32860.173-0.01450.0847-0.2772-0.2882-0.2749-0.0769-0.1077-46.200277.798785.8912
30.4264-0.57732.26893.48960.44910-0.0006-0.0090.02130.00670.0006-0.0382-0.0139-0.025500.07480.09-0.0758-0.17990.05640.1057-91.530585.9236-19.7643
40.30220.88950.364400.52611.50260.00450.0303-0.0015-0.0181-0.0053-0.00860.00690.01160.00080.1022-0.0498-0.01810.0093-0.0561-0.084-36.808292.101725.7518
50.2139-0.31390.36051.4251-1.01040.64960.00410.0238-0.0054-0.0107-0.00010.00340.02790.0124-0.0039-0.03250.0492-0.0062-0.01490.04260.0577-140.10752.5292-37.9928
60.59510.57780.05340.5192-0.32420.3465-0.0004-0.0077-0.00620.0034-0.00320.0088-0.00190.00310.00360.0097-0.0245-0.01860.01610.01130.0355-91.186880.551447.4691
70.0172-2.47740.08451.045-3.18390.00010.00240.0210.0354-0.0269-0.0043-0.0133-0.0212-0.02320.00190.06170.2174-0.1389-0.04140.17310.0084-94.258844.2296-80.5978
81.9750.39260.96382.21371.22690.85210.0090.0577-0.0364-0.0234-0.0292-0.0325-0.02390.03670.02020.0394-0.1075-0.1473-0.1458-0.27490.0986-53.137434.760765.3525
90.4074-1.174-0.88072.5061-2.12340.024-0.00170.01690.0123-0.04750.00990.0033-0.03580.0124-0.00820.06550.161-0.1255-0.10910.14840.0907-85.975957.7207-44.9063
100.0223-0.59561.7950.81881.64710.2386-0.00050.0206-0.0224-0.0117-0.0076-0.02430.01220.02640.00810.087-0.1043-0.1497-0.0404-0.1516-0.018-41.345868.953955.4339
110.51050.65480.27371.33481.49630.1855-0.0031-0.0131-0.00530.0011-0.00180.0033-0.01240.01830.00490.0487-0.023-0.058-0.0536-0.12480.0433-47.246544.673735.3902
121.07261.5087-0.79890.5258-1.28390-0.00320.00810.00660.00710.0063-0.0110.00340.0318-0.00310.0177-0.13590.0428-0.01980.06710.02758.821141.91773.7574
130.574-0.5396-0.23830.96130.16340.82730.0007-0.01220.00130.01440.00670.01260.0083-0.0093-0.0074-0.00230.04830.0380.0197-0.00340.0158-130.81149.597430.5864
140.3653-0.09290.27440.92110.39120.37560.002-0.00670.01110.0029-0.00020.01420.0016-0.0011-0.00180.0180.0043-0.00890.0022-0.01190.031-76.7006148.23653.6545
150-0.21030.63562.7414-1.76410.36610-0.0060.0228-0.0073-0.0045-0.0132-0.00280.00230.00440.08410.0095-0.0635-0.13740.08860.0985-53.151362.0043-38.09
160.23470.49550.08930.45960.78290.49860.00440.00420.0033-0.0211-0.005-0.01730.0020.01020.00060.011-0.06760.00910.0042-0.05630.0109-6.727869.98756.655
170.58010.0235-0.07290.00280.19770.48470.0007-0.01550.00460.00830.00080.0006-0.0166-0.0142-0.0015-0.00270.05130.04150.0108-0.00160.0149-151.73567.399914.0087
180.12660.1440.35521.04590.36350.107-0.0024-0.00030.012800.00710.0062-0.00020.0019-0.00470.00730.0065-0.02650.00580.01610.0257-94.7881133.32831.5358
190.87110.8894-0.29710.5489-0.87280-0.00060.0055-0.001-0.00160.00110.0051-0.0084-0.0206-0.0005-0.01560.03090.0128-0.00450.04560.0298-162.10964.0196-20.289
200.5710.3246-0.30771.0802-0.235800.00060.0057-0.0053-0.0070.00030.01110.0020.0032-0.00090.0066-0.0138-0.020.0114-0.00420.0149-108.57100.05332.271
210.1863-1.196-0.88291.66130.15590.0610.0058-0.03820-0.0060.00260.01320.00060.0073-0.00850.01710.11020.0194-0.0144-0.10290.0325-92.308135.913937.374
2200.23170.05340.45540.59411.21520.00430.00490.01870.002-0.0140.0048-0.0014-0.03040.00980.0744-0.12620.0017-0.02680.0082-0.011-36.4521152.28273.7674
231.2867-0.16671.09041.5259-0.29320.0670.00680.0173-0.0296-0.014-0.01770.0528-0.0195-0.02610.0109-0.05030.0952-0.1015-0.01620.02470.1172-90.755210.5315-47.8115
240.0938-0.02550.42950.3570.97410.3816-0.0015-0.01120.00340.0557-0.03630.0185-0.00530.01220.03780.0956-0.0793-0.0266-0.0732-0.08560.0216-54.265666.805799.7389
250-0.2868-0.58610.4444-0.98920.1110.0033-0.01510.0004-0.0005-0.00750.00820.0058-0.00980.0042-0.00190.01520.0078-0.00950.0140.025-164.59214.606820.8087
260.4756-0.0214-0.46490.05720.26060.87370.0015-0.00310.00710.00560.00050.00460.0042-0.0004-0.0020.01030.00770.00560.01390.00080.0101-117.806141.38980.7487
270.1918-0.41390.33540.5679-0.559100.00110.00540.00210.0016-0.0046-0.00610.0092-0.02060.0035-0.00680.0048-0.0061-0.00810.02760.0238-163.42731.9508-22.5657
280.25460.47410.04020.6116-0.25480.2013-0.00070.0044-0.00120.00460.0044-0.00790.00020.0008-0.00370.00930.0038-0.00480.011-0.00090.0198-116.91697.95363.3044
291.0242-0.38210.66611.2195-0.43310-0.00340.01290.00330.00340.00960.0045-0.00930.0168-0.00620.006-0.0261-0.0962-0.0363-0.01510.0835-33.192338.6332-4.2672
300.57760.992-0.31390.06950.72130-0.00070.0037-0.0051-0.0011-0.0053-0.01550.00520.01720.0060.0027-0.1308-0.01640.0075-0.00490.014314.072101.32382.4264
310.31630.25130.35260.5213-1.16770.3552-0.00050.0070.00050.0011-0.00030.0112-0.00080.00140.00090.050.01840.0132-0.02570.09030.0045-51.48125.3941-89.3777
320.8458-0.64170.14140.49271.02840-0.0015-0.0040.0081-0.01230.00150.00690.00880.01620-0.01160.0544-0.0212-0.0069-0.04580.0384-17.231621.431193.5979
330.14220.6809-0.76221.2209-0.949500.00020.0040.0095-0.0162-0.0041-0.0172-0.01990.01580.00390.019-0.06050.023-0.04590.04520.0611-29.53328.8998-43.4401
340.30050.25460.66260.4971-0.85370.0063-0.0015-0.00360.0027-0.00910.0023-0.00010.0020.0091-0.0008-0.0231-0.0398-0.01990.0303-0.01620.01649.002864.567895.0076
350.1076-0.29590.47070.50820.4020.06980.0034-0.00270.0050.0033-0.00090.006-0.0097-0.0128-0.00240.04060.047-0.0238-0.0535-0.04110.0415-65.091852.102425.8761
360.11580.5227-0.25820.3709-0.65690.38480.00010.0089-0.00110.002-0.0033-0.0015-0.005-0.00070.00320.0279-0.0790.0224-0.00810.02550.0046-9.2786135.45462.8598
370.2048-0.12250.10570.6705-0.13570.08-0.0007-0.0017-0.0046-0.0013-0.0016-0.00280.009-0.00820.00230.00750.0091-0.01840.01060.02030.0209-169.163.0776-11.561
380.01990.0046-0.06590.1444-0.05630.2331-0.0003-0.00280.00120.00160.00080.0019-0.0003-0.0019-0.00050.00810.00580.00570.0148-0.00270.0139-127.426109.34890.637
390.03080.5724-0.45750.6789-0.66040.05360.003-0.0140.002-0.02610.0029-0.0001-0.02110.0181-0.00590.0153-0.0610.1418-0.0130.06730.0359-18.1987-4.8153-69.6533
400.2515-0.72950.32460.5854-0.38750.1011-0.0012-0.0053-0.00190.00650.0090.0108-0.00840.0093-0.0078-0.00970.0533-0.02220.0296-0.0080.000310.09738.5856130.516
410.3991-0.6150.06310.7489-0.00510.10770.0032-0.02310.0046-0.0051-0.00620.0099-0.0021-0.00120.00310.01540.0369-0.0159-0.0208-0.02360.0283-84.536746.588922.1012
4200.23340.3680.64140.8631.17750.00250.02280.00680.0032-0.00440.00320.0028-0.00470.00190.0389-0.03980.0079-0.0136-0.0027-0.0099-29.4457135.3664.988
430.1551-0.1098-0.17730.1858-0.3740.2343-0.00010.00350.00390.00250.0004-0.0026-0.0048-0.0035-0.00030.01120.02870.03450.01110.0214-0.013-92.8416147.261200.175
441.2902-0.6458-0.78751.22770.19680.801-0.0008-0.0010.0099-0.00320.0082-0.01320.00940.0031-0.0074-0.1035-0.0010.05150.0613-0.06270.1504-122.338-99.959114.2892
450.0022-1.5347-0.770400.33910.9903-0.001-0.0037-0.00770.01320.0047-0.0130.01580.011-0.0037-0.00090.0127-0.01260.0284-0.0121-0.0158-12.906100.535209.591
460.53160.0269-0.28831.09141.06770.81640.0002-0.0034-0.0162-0.0349-0.0113-0.05770.0213-0.02280.0111-0.05940.0770.01720.0056-0.03560.0794-35.4045-90.6251-11.8962
470.00480.0452-0.20950.1626-0.48380.4158-0.00010.003-0.00120.00020.0006-0.0018-0.0001-0.0025-0.00050.02180.00570.0119-0.01060.0090.0123-79.154181.782132.971
480.2779-1.2766-1.18250.71590.76810-0.0037-0.00830.0001-0.00170.00010.0074-0.01920.0040.0036-0.00510.04160.03920.0053-0.11270.0534-130.581-35.017553.603
490.17820.6589-0.270700.66480.2218-0.00140.00480.00070.0008-0.0045-0.0044-0.00190.01440.00590.0058-0.0706-0.03010.0245-0.0804-0.0144-0.3449147.537165.682
501.13231.0450.260600.15220.05370.0026-0.00710.01380.0226-0.00840.0050.0058-0.0050.0058-0.0192-0.0151-0.04920.0547-0.11230.0836-41.6111-50.244638.1865
510-0.07130.36320.35620.465600.0015-0.00290.00080.01050.00280.010500.0041-0.00430.0306-0.01850.0183-0.0267-0.01840.0081-64.335177.351161.903
520.244-0.03860.17570.90560.73230.8882-0.0056-0.0144-0.0124-0.0007-0.0136-0.0035-0.0022-0.01520.01930.0029-0.00170.04830.0417-0.12150.0349-109.789-60.037451.523
530.18460.2116-0.18830.0048-0.1550.09540.00080.005-0.00520.0004-0.00270.00260.0015-0.00130.0019-0.0051-0.02610.02070.00450.03470.0081-92.749385.6103171.346
540.84890.85590.27210.4678-0.0650.17730.00060.00620.0005-0.0031-0.00240.0003-0.0029-0.01070.0018-0.0028-0.0223-0.07020.047-0.02070.0431-113.542-66.3724-44.5838
550.3284-0.1573-0.42430.36550.15960.8544-0.006-0.40820.10070.05590.39190.0262-0.35120.6404-0.3859-0.0458-0.304-0.02980.3358-0.304-0.4085-31.7641134.274164.805
560.1823-0.0045-0.03750.1730.01840.0633-0.0432-0.03180.09660.05980.0032-0.0095-0.0225-0.00650.04-0.22960.0152-0.1075-0.0684-0.14910.2938-68.3101-53.548416.9768
571.9559-1.11980.16930.9888-0.82280.075-0.00490.0212-0.0065-0.0080.02920.0246-0.0088-0.0382-0.0243-0.02550.09490.00030.00980.10710.0295-124.418155.576154.184
582.8877-1.3996-1.38821.31431.29990.84930.02510.0895-0.0172-0.139-0.11960.17270.1092-0.04320.0945-0.40970.01260.0436-0.0258-0.16180.4256-162.572-61.486715.7443
590.14722.03970.97751.64951.07930.17520.0332-0.02690.02180.01190.0294-0.0794-0.0260.0195-0.06250.1038-0.27030.01810.0274-0.1181-0.0515-1.5147138.738117.119
601.2516-0.7477-0.15581.34110.63370.47690.0002-0.0160.12260.06540.0218-0.0759-0.11-0.0421-0.0219-0.1472-0.059-0.1594-0.1929-0.21980.2866-50.057-1.848430.9254
610.0145-0.48890.86560.279-0.75781.9331-0.0227-0.0297-0.0290.01980.03170.0280.03210.053-0.0090.03620.11540.03690.07430.0559-0.0765-38.582572.2725195
620.7571-0.2889-0.21360.48950.00070.0257-0.02110.119-0.0082-0.0735-0.0195-0.05670.0317-0.00120.0406-0.1356-0.0489-0.05440.0527-0.10020.1618-54.6155-78.2542-44.744
631.16780.67650.3450.63591.01770.8858-0.00190.00760.03450.0140.03010.0132-0.0219-0.023-0.02820.0601-0.1014-0.0031-0.0052-0.1546-0.0425-32.1698183.854205.426
640.1913-0.02230.20050.8345-1.00940.9648-0.0191-0.1231-0.02770.03920.03870.02050.02370.0392-0.0196-0.01580.11080.01420.0968-0.04920.056-71.5966-96.612863.2456
650.27010.2890.41400.40730.7658-0.00020.008-0.0056-0.01040.00110.00560.0025-0.0039-0.00090.0080.0017-0.01060.0253-0.00270.0057-124.479155.271113.311
663.1972-0.95350.52162.98570.84480.0222-0.00580.0308-0.01020.0281-0.0180.0373-0.15310.01660.0238-0.244-0.0442-0.0668-0.034-0.02890.2295-169.382-20.362717.7706
670.4120.6728-1.32041.3287-1.50170.1275-0.001-0.00860.00160.0041-0.00330.01870.02-0.00310.00430.0101-0.0310.0559-0.00650.04360.0234-95.25764.4493187.258
681.59640.5052-0.01950.5684-0.11650.1557-0.01890.0922-0.0544-0.0456-0.02980.032-0.00420.01160.0487-0.0962-0.1901-0.03230.0954-0.10330.0411-107.733-80.065-66.6491
690.73350.3703-1.58410.65681.53820.64640.0103-0.00120.0349-0.0095-0.0211-0.0033-0.0064-0.03430.01080.0057-0.05130.0747-0.020.01350.01568.1521215.516102.259
701.09620.34790.50090.45860.04230.04970.0078-0.0071-0.06190.0052-0.01050.02420.0065-0.01730.00260.0234-0.0529-0.0338-0.0212-0.0841-0.0145-62.90169.508107.77
710.58020.1016-0.21090.2134-0.07790.3066-0.00010.00380.00160.00250.00460.00030.00730.0007-0.00450.00990.00470.00050.0176-0.00080.0158-120.32663.7566136.152
720.1261-0.3191-0.35750.9646-0.62590-0.0025-0.00480.0064-0.01110.00120.0008-0.01390.00110.00130.01240.0090.0057-0.00550.01480.0259-144.287-36.0802-71.5394
731.3468-0.1331-0.64870.1125-0.65610.5330.0076-0.0130-0.01450.00190.02580.00940.0258-0.00950.01440.05650.06690.050.0815-0.0285-69.504198.0974212.664
741.6128-0.2336-0.31910.3849-0.38050.3446-0.02020.04720.00170.0022-0.02310.01830.0474-0.01170.0434-0.1881-0.0607-0.04070.0718-0.16780.2031-86.465-104.122-28.4541
750.00010.044-0.07931.28680.10930.965-0.0046-0.0099-0.0254-0.00410.00160.01230.00460.00110.00310.03850.015-0.01350.02860.0122-0.0349-38.372666.1976151.08
762.335-0.17730.02030.36840.19610.0252-0.00230.01840.0092-0.03560.00250.00710.0088-0.04-0.0003-0.04380.0325-0.12090.04870.00440.1135-61.7332-35.0524-49.5181
770-0.1098-1.17820.4650.11991.5433-0.00470.01540.0588-0.00420.0054-0.0011-0.0057-0.0082-0.00070.0296-0.02340.0471-0.0222-0.0685-0.0147-55.3078188.7177.439
780.4348-0.0968-0.20090.33430.15820.40750.006-0.0839-0.02810.121-0.02510.02560.0152-0.00650.0191-0.070.070.03210.0378-0.11480.0743-99.831-74.625162.8605
790.4619-0.45541.54240.58220.57971.2638-0.0025-0.003-0.0189-0.00050.00640.0276-0.0059-0.0012-0.0039-0.0172-0.0511-0.02380.0110.05550.0261-98.0169116.626156.419
802.751-1.52071.4440.45-1.251600.01170.04290.0054-0.0293-0.00310.0287-0.0136-0.0479-0.0086-0.18910.0536-0.10470.0282-0.12180.2297-128.23-55.4545-14.3992
810.2922-1.41481.149100.98112.3187-0.0026-0.0094-0.00230.0096-0.0042-0.00650.00240.00280.00680.00780.0759-0.06990.0867-0.0351-0.06583.727182.6761193.387
822.43050.1608-0.430.8775-0.55530.0726-0.00550.01580.0264-0.0107-0.0005-0.01210.03010.02790.006-0.21180.02680.04440.0887-0.09610.2125-16.6356-70.298-24.9585
830.3745-0.2-0.29230.3779-0.13370.56080.0014-0.0038-0.00190.0023-0.00040.008-0.0099-0.0057-0.00090.01290.04490.01080.00820.02010.0122-124.033182.896146.724
842.67570.8349-0.40261.08640.30690.5734-0.0011-0.030.01230.02910.01290.00490.0311-0.0234-0.0118-0.19260.04010.15720.0834-0.13130.1676-170.836-55.344342.6793
850.1671-1.4832-0.09410.59230.61480.5749-0.0024-0.0061-0.00790.00420.01350.0003-0.0047-0.0008-0.01110.04090.09510.00940.01980.0292-0.0325-18.238754.6316166.378
862.00370.1133-0.00241.0423-0.45070.154-0.00140.0210.0262-0.01980.0031-0.0204-0.02880.0166-0.0017-0.051-0.00930.02840.04530.05860.0947-36.8814-45.4943-56.7677
870.24811.3155-0.27330.1420.92531.3085-0.0032-0.0253-0.03990.00420.04890.0314-0.02320.0271-0.04570.00580.03480.02790.0408-0.0024-0.0154-64.9659128.47216.493
881.93740.74151.02211.2730.99220.1215-0.00610.0088-0.06190.015-0.0259-0.00990.01980.05130.032-0.1281-0.06870.0183-0.0027-0.02230.1992-87.4545-108.8492.5807
890.750.79420.50910.2220.16210.791-0.0001-0.01150.0035-0.0168-0.00020.0324-0.00390.00380.00030.0124-0.0040.02410.0427-0.0203-0.0346-69.8614138.587228.605
901.20840.14540.1091.38791.27630.5677-0.0060.0228-0.09570.0235-0.0054-0.02250.03620.05370.0114-0.0561-0.02310.0308-0.0398-0.06430.1775-92.2211-122.11910.4375
911.3870.69880.501200.12860.596-0.00260.0074-0.01430.02520.0061-0.00390.00560.0061-0.00350.0049-0.0154-0.03340.0633-0.0675-0.0429-12.1772117.47212.352
921.74561.3216-0.77150.87181.51210.2346-0.0075-0.01-0.0856-0.0297-0.0234-0.07630.02070.0040.0309-0.17040.0625-0.05350.0167-0.12390.19-36.7433-93.7623.9721
930.03550.59790.88980.39581.62071.12520.00030.0034-0.0079-0.0001-0.0032-0.0110.00140.00210.0029-0.0103-0.0527-0.0440.0343-0.07310.002532.6152141.1181.659
942.0199-1.011.10160.866-0.01161.3072-0.0050.008800.0395-0.0136-0.04020.00270.0240.0186-0.1101-0.033-0.18630.0779-0.07960.124-5.3467-58.560638.9695
950.33020.29130.260500.49770.48060-0.00490.0078-0.00370.0004-0.0028-0.00690.0096-0.00040.0153-0.0448-0.02540.0162-0.0568-0.00549.9276165.697223.663
961.3758-0.21350.46410.0119-0.19081.259-0.0092-0.0102-0.02030.01320.0207-0.0124-0.0280.0127-0.01160.00410.1121-0.05890.0648-0.01720.0228-24.2044-106.17155.4058
970.31230.3427-0.64720.5855-0.82410.0575-0.00110.00150.0011-0.0129-0.0020.0008-0.0058-0.00690.0031-0.02560.00080.02120.02340.05230.0297-122.38122.647179.267
982.1671-0.15230.5691.20330.86540.72430.0050.01720.0197-0.00550.00580.00410.009-0.0017-0.0108-0.1291-0.0585-0.07510.0677-0.14510.1526-148.65-82.6285-16.0772
990.0624-0.165-0.39930.479-1.14610.31210.00130.00090.0002-0.00210.00280.0009-0.0078-0.0088-0.00410.03270.01880.0189-0.01120.0236-0.0054-97.2516164.342162.269
1001.18570.3916-0.16070.98560.89660.034-0.00220.0185-0.00460.0173-0.00630.04280.0122-0.01350.0086-0.08350.07130.07660.0307-0.13470.1474-137.201-64.423930.5635
10101.3009-0.66590.83662.86661.201-0.0008-0.00880.0043-0.0052-0.0015-0.00790.002600.00230.0087-0.16510.0320.0003-0.11430.0102-9.5438179.157135.92
1022.08820.0517-0.49330.30421.01380.3298-0.0019-0.00970.01580.0421-0.0044-0.0295-0.01220.00310.00620.0093-0.0211-0.06270.0348-0.20640.0312-63.5912-24.617967.9933
10300.6280.763900.41430.35240.00010.0028-0.0007-0.0013-0.0034-0.0002-0.00120.00030.00340.0186-0.0304-0.03730.011-0.0326-0.000935.4289163.167191.207
1041.2992-0.64420.59590.3288-0.16440.17610.00180.00320.0010.0243-0.0029-0.0191-0.00390.00780.0011-0.03040.0282-0.12140.0422-0.02530.0521-5.8611-69.588860.4551
1050.9679-0.10280.69110.0104-1.41360.3680.00080.00230.0101-0.0214-0.0053-0.003-0.0194-0.01170.0045-0.02750.0294-0.05470.05190.0820.0113-154.292-70.8807-76.5845
Refinement TLS group
IDRefine-IDRefine TLS-IDSelection detailsAuth asym-IDAuth seq-ID
1X-RAY DIFFRACTION1{ A|1 - A|2209 }A1 - 2209
2X-RAY DIFFRACTION2{ B|2 - B|1986 }B2 - 1986
3X-RAY DIFFRACTION3{ A|2304 - A|2601 }A2304 - 2601
4X-RAY DIFFRACTION4{ B|2304 - B|2527 }B2304 - 2527
5X-RAY DIFFRACTION5{ A|2602 - A|2906 }A2602 - 2906
6X-RAY DIFFRACTION6{ B|2602 - B|2807 }B2602 - 2807
7X-RAY DIFFRACTION7{ A|3002 - A|3302 }A3002 - 3302
8X-RAY DIFFRACTION8{ B|3002 - B|3312 }B3002 - 3312
9X-RAY DIFFRACTION9{ A|3410 - A|3605 }A3410 - 3605
10X-RAY DIFFRACTION10{ B|3410 - B|3601 }B3410 - 3601
11X-RAY DIFFRACTION11{ A|3701 - A|3901 }A3701 - 3901
12X-RAY DIFFRACTION12{ B|3701 - B|3902 }B3701 - 3902
13X-RAY DIFFRACTION13{ A|4002 - A|4201 }A4002 - 4201
14X-RAY DIFFRACTION14{ B|4002 - B|4152 }B4002 - 4152
15X-RAY DIFFRACTION15{ A|4202 - A|4401 }A4202 - 4401
16X-RAY DIFFRACTION16{ B|4202 - B|4330 }B4202 - 4330
17X-RAY DIFFRACTION17{ A|4404 - A|4530 }A4404 - 4530
18X-RAY DIFFRACTION18{ B|4404 - B|4530 }B4404 - 4530
19X-RAY DIFFRACTION19{ A|4604 - A|4802 }A4604 - 4802
20X-RAY DIFFRACTION20{ B|4605 - B|4702 }B4605 - 4702
21X-RAY DIFFRACTION21{ A|4813 - A|5006 }A4813 - 5006
22X-RAY DIFFRACTION22{ B|4813 - B|4929 }B4813 - 4929
23X-RAY DIFFRACTION23{ A|5102 - A|5410 }A5102 - 5410
24X-RAY DIFFRACTION24{ B|5102 - B|5305 }B5102 - 5305
25X-RAY DIFFRACTION25{ A|5502 - A|5804 }A5502 - 5804
26X-RAY DIFFRACTION26{ B|5502 - B|5615 }B5502 - 5615
27X-RAY DIFFRACTION27{ A|5902 - A|6106 }A5902 - 6106
28X-RAY DIFFRACTION28{ B|5902 - B|6103 }B5902 - 6103
29X-RAY DIFFRACTION29{ A|6202 - A|6302 }A6202 - 6302
30X-RAY DIFFRACTION30{ B|6202 - B|6301 }B6202 - 6301
31X-RAY DIFFRACTION31{ A|6401 - A|6502 }A6401 - 6502
32X-RAY DIFFRACTION32{ B|6401 - B|6503 }B6401 - 6503
33X-RAY DIFFRACTION33{ A|6504 - A|6583 }A6504 - 6583
34X-RAY DIFFRACTION34{ B|6504 - B|6583 }B6504 - 6583
35X-RAY DIFFRACTION35{ A|6620 - A|6674 }A6620 - 6674
36X-RAY DIFFRACTION36{ B|6620 - B|6674 }B6620 - 6674
37X-RAY DIFFRACTION37{ A|6703 - A|6801 }A6703 - 6801
38X-RAY DIFFRACTION38{ B|6703 - B|6781 }B6703 - 6781
39X-RAY DIFFRACTION39{ A|6802 - A|6902 }A6802 - 6902
40X-RAY DIFFRACTION40{ B|6803 - B|6905 }B6803 - 6905
41X-RAY DIFFRACTION41{ A|7002 - A|7102 }A7002 - 7102
42X-RAY DIFFRACTION42{ B|7002 - B|7102 }B7002 - 7102
43X-RAY DIFFRACTION43{ A|7202 - A|7259 }A7202 - 7259
44X-RAY DIFFRACTION44{ B|7202 - B|7425 }B7202 - 7425
45X-RAY DIFFRACTION45{ A|7502 - A|7557 }A7502 - 7557
46X-RAY DIFFRACTION46{ B|7502 - B|7747 }B7502 - 7747
47X-RAY DIFFRACTION47{ A|7804 - A|7853 }A7804 - 7853
48X-RAY DIFFRACTION48{ B|7804 - B|7909 }B7804 - 7909
49X-RAY DIFFRACTION49{ A|8001 - A|8202 }A8001 - 8202
50X-RAY DIFFRACTION50{ B|8001 - B|8225 }B8001 - 8225
51X-RAY DIFFRACTION51{ A|8302 - A|8401 }A8302 - 8401
52X-RAY DIFFRACTION52{ B|8302 - B|8438 }B8302 - 8438
53X-RAY DIFFRACTION53{ A|8501 - A|8601 }A8501 - 8601
54X-RAY DIFFRACTION54{ B|8501 - B|8714 }B8501 - 8714
55X-RAY DIFFRACTION55{ C|1 - C|3892 }C1 - 3892
56X-RAY DIFFRACTION56{ D|1 - D|8115 }D1 - 8115
57X-RAY DIFFRACTION57{ C|8202 - C|8513 }C8202 - 8513
58X-RAY DIFFRACTION58{ D|8201 - D|8709 }D8201 - 8709
59X-RAY DIFFRACTION59{ C|8802 - C|9108 }C8802 - 9108
60X-RAY DIFFRACTION60{ D|8802 - D|9206 }D8802 - 9206
61X-RAY DIFFRACTION61{ C|9301 - C|9606 }C9301 - 9606
62X-RAY DIFFRACTION62{ D|9301 - D|9803 }D9301 - 9803
63X-RAY DIFFRACTION63{ E|1 - E|306 }E1 - 306
64X-RAY DIFFRACTION64{ F|1 - F|462 }F1 - 462
65X-RAY DIFFRACTION65{ E|502 - E|678 }E502 - 678
66X-RAY DIFFRACTION66{ F|502 - F|714 }F502 - 714
67X-RAY DIFFRACTION67{ E|802 - E|977 }E802 - 977
68X-RAY DIFFRACTION68{ F|802 - F|1006 }F802 - 1006
69X-RAY DIFFRACTION69{ E|1101 - E|1249 }E1101 - 1249
70X-RAY DIFFRACTION70{ F|1101 - F|1302 }F1101 - 1302
71X-RAY DIFFRACTION71{ E|1308 - E|1441 }E1308 - 1441
72X-RAY DIFFRACTION72{ F|1308 - F|1441 }F1308 - 1441
73X-RAY DIFFRACTION73{ E|1501 - E|1701 }E1501 - 1701
74X-RAY DIFFRACTION74{ F|1501 - F|1859 }F1501 - 1859
75X-RAY DIFFRACTION75{ E|1901 - E|2101 }E1901 - 2101
76X-RAY DIFFRACTION76{ F|1901 - F|2245 }F1901 - 2245
77X-RAY DIFFRACTION77{ E|2301 - E|2605 }E2301 - 2605
78X-RAY DIFFRACTION78{ F|2301 - F|2667 }F2301 - 2667
79X-RAY DIFFRACTION79{ E|2701 - E|2836 }E2701 - 2836
80X-RAY DIFFRACTION80{ F|2701 - F|3074 }F2701 - 3074
81X-RAY DIFFRACTION81{ E|3101 - E|3301 }E3101 - 3301
82X-RAY DIFFRACTION82{ F|3101 - F|3342 }F3101 - 3342
83X-RAY DIFFRACTION83{ E|3402 - E|3517 }E3402 - 3517
84X-RAY DIFFRACTION84{ F|3401 - F|3737 }F3401 - 3737
85X-RAY DIFFRACTION85{ E|3802 - E|3915 }E3802 - 3915
86X-RAY DIFFRACTION86{ F|3802 - F|4127 }F3802 - 4127
87X-RAY DIFFRACTION87{ E|4202 - E|4318 }E4202 - 4318
88X-RAY DIFFRACTION88{ F|4202 - F|4567 }F4202 - 4567
89X-RAY DIFFRACTION89{ E|4601 - E|4801 }E4601 - 4801
90X-RAY DIFFRACTION90{ F|4601 - F|4950 }F4601 - 4950
91X-RAY DIFFRACTION91{ E|5001 - E|5110 }E5001 - 5110
92X-RAY DIFFRACTION92{ F|5001 - F|5361 }F5001 - 5361
93X-RAY DIFFRACTION93{ E|5401 - E|5502 }E5401 - 5502
94X-RAY DIFFRACTION94{ F|5401 - F|5619 }F5401 - 5619
95X-RAY DIFFRACTION95{ E|5702 - E|5902 }E5702 - 5902
96X-RAY DIFFRACTION96{ F|5702 - F|5922 }F5702 - 5922
97X-RAY DIFFRACTION97{ E|6001 - E|6101 }E6001 - 6101
98X-RAY DIFFRACTION98{ F|6001 - F|6132 }F6001 - 6132
99X-RAY DIFFRACTION99{ E|6211 - E|6285 }E6211 - 6285
100X-RAY DIFFRACTION100{ F|6210 - F|6330 }F6210 - 6330
101X-RAY DIFFRACTION101{ E|6402 - E|6501 }E6402 - 6501
102X-RAY DIFFRACTION102{ F|6402 - F|6510 }F6402 - 6510
103X-RAY DIFFRACTION103{ E|6602 - E|6663 }E6602 - 6663
104X-RAY DIFFRACTION104{ F|6602 - F|6708 }F6602 - 6708
105X-RAY DIFFRACTION105{ G|2 - G|136 }G2 - 136

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Jul 12, 2017. Major update of PDB

Major update of PDB

  • wwPDB released updated PDB data conforming to the new PDBx/mmCIF dictionary.
  • This is a major update changing the version number from 4 to 5, and with Remediation, in which all the entries are updated.
  • In this update, many items about electron microscopy experimental information are reorganized (e.g. em_software).
  • Now, EM Navigator and Yorodumi are based on the updated data.

External links:wwPDB Remediation / Enriched Model Files Conforming to OneDep Data Standards Now Available in the PDB FTP Archive

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Yorodumi

Thousand views of thousand structures

  • Yorodumi is a browser for structure data from EMDB, PDB, SASBDB, etc.
  • This page is also the successor to EM Navigator detail page, and also detail information page/front-end page for Omokage search.
  • The word "yorodu" (or yorozu) is an old Japanese word meaning "ten thousand". "mi" (miru) is to see.

Related info.:EMDB / PDB / SASBDB / Comparison of 3 databanks / Yorodumi Search / Aug 31, 2016. New EM Navigator & Yorodumi / Yorodumi Papers / Jmol/JSmol / Function and homology information / Changes in new EM Navigator and Yorodumi

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