[English] 日本語
Yorodumi
- PDB-4u50: Crystal structure of Verrucarin bound to the yeast 80S ribosome -

+
Open data


ID or keywords:

Loading...

-
Basic information

Entry
Database: PDB / ID: 4u50
TitleCrystal structure of Verrucarin bound to the yeast 80S ribosome
Components
  • (40S ribosomal protein ...) x 32
  • (60S ribosomal protein ...) x 40
  • (UNKNOWN PROTEIN ...) x 3
  • 18S ribosomal RNA
  • 25S ribosomal RNA
  • 5.8S ribosomal RNA
  • 5S ribosomal RNA
  • 60S acidic ribosomal protein P0
  • Guanine nucleotide-binding protein subunit beta-like protein
  • Suppressor protein STM1
  • Ubiquitin-40S ribosomal protein S31
  • Ubiquitin-60S ribosomal protein L40
KeywordsRIBOSOME / translation / 40S / 60S / 80S / eukaryote / RNA-protein complex / inhibitor / antibiotic
Function / homology
Function and homology information


ribosome hibernation / triplex DNA binding / translation elongation factor binding / regulation of translational initiation in response to stress / Platelet degranulation / maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, LSU-rRNA,5S) / negative regulation of glucose mediated signaling pathway / negative regulation of translational frameshifting / Protein methylation / RMTs methylate histone arginines ...ribosome hibernation / triplex DNA binding / translation elongation factor binding / regulation of translational initiation in response to stress / Platelet degranulation / maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, LSU-rRNA,5S) / negative regulation of glucose mediated signaling pathway / negative regulation of translational frameshifting / Protein methylation / RMTs methylate histone arginines / positive regulation of translational fidelity / GDP-dissociation inhibitor activity / mTORC1-mediated signalling / ribosome-associated ubiquitin-dependent protein catabolic process / Protein hydroxylation / : / pre-mRNA 5'-splice site binding / positive regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay / Formation of the ternary complex, and subsequently, the 43S complex / Translation initiation complex formation / cleavage in ITS2 between 5.8S rRNA and LSU-rRNA of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) / Ribosomal scanning and start codon recognition / preribosome, small subunit precursor / translational elongation / response to cycloheximide / telomeric DNA binding / mRNA destabilization / TOR signaling / Major pathway of rRNA processing in the nucleolus and cytosol / SRP-dependent cotranslational protein targeting to membrane / 90S preribosome / GTP hydrolysis and joining of the 60S ribosomal subunit / Formation of a pool of free 40S subunits / endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) / Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC) / Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC) / : / negative regulation of mRNA splicing, via spliceosome / protein-RNA complex assembly / ribosomal small subunit export from nucleus / preribosome, large subunit precursor / L13a-mediated translational silencing of Ceruloplasmin expression / translation regulator activity / ribosomal large subunit export from nucleus / G-protein alpha-subunit binding / endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) / regulation of translational fidelity / positive regulation of protein kinase activity / rescue of stalled ribosome / translational termination / maturation of SSU-rRNA / translation repressor activity / maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) / maturation of LSU-rRNA / ribosomal large subunit biogenesis / DNA-(apurinic or apyrimidinic site) endonuclease activity / maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) / cellular response to amino acid starvation / ribosome assembly / telomere maintenance / small-subunit processome / protein kinase C binding / maintenance of translational fidelity / macroautophagy / modification-dependent protein catabolic process / ribosomal small subunit biogenesis / protein tag activity / small ribosomal subunit rRNA binding / rRNA processing / ribosomal small subunit assembly / cytoplasmic stress granule / ribosomal large subunit assembly / cytosolic small ribosomal subunit / large ribosomal subunit rRNA binding / ribosome binding / ribosome biogenesis / 5S rRNA binding / cytoplasmic translation / small ribosomal subunit / cytosolic large ribosomal subunit / negative regulation of translation / protein ubiquitination / rRNA binding / ribosome / structural constituent of ribosome / positive regulation of protein phosphorylation / translation / G protein-coupled receptor signaling pathway / negative regulation of gene expression / response to antibiotic / mRNA binding / ubiquitin protein ligase binding / nucleolus / negative regulation of apoptotic process / perinuclear region of cytoplasm / mitochondrion / DNA binding / RNA binding / zinc ion binding / nucleoplasm
Similarity search - Function
Stm1-like, N-terminal / Stm1 / Hyaluronan/mRNA-binding protein / Hyaluronan / mRNA binding family / 60s Acidic ribosomal protein / 60S acidic ribosomal protein P0 / : / : / Ribosomal protein S12e / 50S ribosomal protein L10, insertion domain superfamily ...Stm1-like, N-terminal / Stm1 / Hyaluronan/mRNA-binding protein / Hyaluronan / mRNA binding family / 60s Acidic ribosomal protein / 60S acidic ribosomal protein P0 / : / : / Ribosomal protein S12e / 50S ribosomal protein L10, insertion domain superfamily / 60S ribosomal protein L10P, insertion domain / Small (40S) ribosomal subunit Asc1/RACK1 / Insertion domain in 60S ribosomal protein L10P / : / S27a-like superfamily / Ribosomal protein S10, eukaryotic/archaeal / Ribosomal protein S25 / Ribosomal protein S26e signature. / Ribosomal protein S17e, conserved site / : / Ribosomal protein S30 / 40S ribosomal protein S29/30S ribosomal protein S14 type Z / Ribosomal protein S27a / Ribosomal protein S27a / Ribosomal protein S3, eukaryotic/archaeal / S25 ribosomal protein / Ribosomal protein L10e, conserved site / Ribosomal protein S26e / Ribosomal protein S26e superfamily / Ribosomal protein S26e / Ribosomal protein L10e / Ribosomal protein L27e, conserved site / Ribosomal protein S19A/S15e / Ribosomal protein S21e, conserved site / Ribosomal protein S21e signature. / Ribosomal protein S30 / Ribosomal protein S3Ae, conserved site / Ribosomal protein S12e signature. / Ribosomal protein S17e / Ribosomal protein S17e-like superfamily / Ribosomal protein S27a / 40S ribosomal protein S11, N-terminal / 40S ribosomal protein S1/3, eukaryotes / Ribosomal protein S6, eukaryotic / Ribosomal protein S7e / Eukaryotic Ribosomal Protein L27, KOW domain / Ribosomal protein S19e, conserved site / Ribosomal S17 / Ribosomal protein S19e signature. / Ribosomal protein L44e / Ribosomal protein L38e / Ribosomal protein S2, eukaryotic / Ribosomal protein L38e superfamily / Ribosomal protein L27e / Ribosomal protein S21e / Ribosomal protein S21e superfamily / Ribosomal protein L27e superfamily / Ribosomal protein S21e / Ribosomal protein S27, zinc-binding domain superfamily / Ribosomal L38e protein family / Ribosomal protein L29e / Ribosomal L29e protein family / 60S ribosomal protein L35 / Ribosomal protein S17, archaeal/eukaryotic / Ribosomal protein S27 / Ribosomal protein S5, eukaryotic/archaeal / Ribosomal protein S28e conserved site / Ribosomal protein S6/S6e/A/B/2, conserved site / Ribosomal protein S28e / Ribosomal protein L35Ae, conserved site / 40S Ribosomal protein S10 / Ribosomal_S17 N-terminal / Ribosomal protein S3Ae / Ribosomal S3Ae family / Ribosomal protein L44 / Ribosomal protein S7e / Ribosomal protein L13e, conserved site / Ribosomal protein L13e signature. / Ribosomal L27e protein family / Ribosomal protein S5/S7, eukaryotic/archaeal / Ribosomal protein L22e / Ribosomal protein L22e superfamily / Ribosomal L22e protein family / Ribosomal protein S6e / Plectin/S10, N-terminal / Ribosomal protein S13/S15, N-terminal / Ribosomal protein S15P / Plectin/S10 domain / Ribosomal S13/S15 N-terminal domain / Ribosomal protein S6e / Ribosomal protein S4/S9, eukaryotic/archaeal / Ribosomal protein S2, eukaryotic/archaeal / Ribosomal protein L31e, conserved site / Ribosomal protein L37ae / Ribosomal protein S27 / Ribosomal protein L19, eukaryotic / Ribosomal protein S8e subdomain, eukaryotes / Ribosomal S3Ae family / Ribosomal protein L35A / Ribosomal protein S17e signature.
Similarity search - Domain/homology
Chem-3L2 / osmium (III) hexammine / : / : / RNA / RNA (> 10) / RNA (> 100) / RNA (> 1000) / : / Small ribosomal subunit protein uS4A ...Chem-3L2 / osmium (III) hexammine / : / : / RNA / RNA (> 10) / RNA (> 100) / RNA (> 1000) / : / Small ribosomal subunit protein uS4A / Large ribosomal subunit protein uL15 / Small ribosomal subunit protein eS17A / Large ribosomal subunit protein eL24A / Large ribosomal subunit protein uL23 / Large ribosomal subunit protein eL39 / Large ribosomal subunit protein uL10 / Large ribosomal subunit protein uL30A / Large ribosomal subunit protein uL6A / Large ribosomal subunit protein uL22A / Large ribosomal subunit protein uL24A / Large ribosomal subunit protein eL33A / Large ribosomal subunit protein eL36A / Large ribosomal subunit protein eL29 / Large ribosomal subunit protein eL15A / Large ribosomal subunit protein eL22A / Small ribosomal subunit protein uS3 / Small ribosomal subunit protein uS15 / Ubiquitin-ribosomal protein eS31 fusion protein / Small ribosomal subunit protein uS11A / Small ribosomal subunit protein eS19A / Small ribosomal subunit protein eS21A / Small ribosomal subunit protein uS8A / Large ribosomal subunit protein eL27A / Large ribosomal subunit protein eL31A / Ubiquitin-ribosomal protein eL40A fusion protein / Large ribosomal subunit protein eL20A / Large ribosomal subunit protein eL43A / Large ribosomal subunit protein eL42A / Small ribosomal subunit protein uS12A / Small ribosomal subunit protein eS24A / Small ribosomal subunit protein eS30A / Small ribosomal subunit protein eS4A / Small ribosomal subunit protein eS6A / Small ribosomal subunit protein eS8A / Large ribosomal subunit protein uL14A / Large ribosomal subunit protein uL2A / Small ribosomal subunit protein uS17A / Large ribosomal subunit protein eL18A / Small ribosomal subunit protein uS9A / Small ribosomal subunit protein uS13A / Large ribosomal subunit protein eL19A / Large ribosomal subunit protein uL29A / Large ribosomal subunit protein uL4A / Large ribosomal subunit protein eL30 / Large ribosomal subunit protein uL3 / Large ribosomal subunit protein eL8A / Small ribosomal subunit protein uS5 / Large ribosomal subunit protein uL18 / Small ribosomal subunit protein uS7 / Large ribosomal subunit protein uL13A / Small ribosomal subunit protein eS7A / Small ribosomal subunit protein uS2A / Small ribosomal subunit protein eS1A / Small ribosomal subunit protein eS27A / Large ribosomal subunit protein eL14A / Small ribosomal subunit protein RACK1 / Large ribosomal subunit protein eL32 / Small ribosomal subunit protein uS10 / Suppressor protein STM1 / Small ribosomal subunit protein eS26B / Small ribosomal subunit protein uS14A / Large ribosomal subunit protein uL16 / Small ribosomal subunit protein eS12 / Large ribosomal subunit protein eL37A / Large ribosomal subunit protein eL38 / Large ribosomal subunit protein eL34A / Small ribosomal subunit protein uS19 / Large ribosomal subunit protein eL6A / Large ribosomal subunit protein eL21A / Small ribosomal subunit protein eS10A / Large ribosomal subunit protein eL13A / Large ribosomal subunit protein uL5B / Small ribosomal subunit protein eS25A / Small ribosomal subunit protein eS28A
Similarity search - Component
Biological speciesSaccharomyces cerevisiae S288c (yeast)
MethodX-RAY DIFFRACTION / SYNCHROTRON / MOLECULAR REPLACEMENT / Resolution: 3.2 Å
AuthorsGarreau de Loubresse, N. / Prokhorova, I. / Yusupova, G. / Yusupov, M.
CitationJournal: Nature / Year: 2014
Title: Structural basis for the inhibition of the eukaryotic ribosome.
Authors: Garreau de Loubresse, N. / Prokhorova, I. / Holtkamp, W. / Rodnina, M.V. / Yusupova, G. / Yusupov, M.
History
DepositionJul 24, 2014Deposition site: RCSB / Processing site: PDBE
Revision 1.0Oct 22, 2014Provider: repository / Type: Initial release
SupersessionDec 10, 2014ID: 4ulp, 4ulq, 4ulr, 4uls, 4ult
Revision 1.1Dec 10, 2014Group: Other
Revision 1.2Dec 17, 2014Group: Other
Revision 1.3Jan 21, 2015Group: Derived calculations
Revision 1.4Jan 20, 2016Group: Structure summary
Revision 1.5Jul 18, 2018Group: Advisory / Data collection ...Advisory / Data collection / Derived calculations / Source and taxonomy
Category: database_PDB_caveat / entity_src_nat ...database_PDB_caveat / entity_src_nat / pdbx_unobs_or_zero_occ_atoms / pdbx_validate_close_contact / struct_conn / struct_conn_type
Item: _entity_src_nat.pdbx_organism_scientific
Revision 1.6Dec 20, 2023Group: Data collection / Database references ...Data collection / Database references / Derived calculations / Refinement description
Category: chem_comp_atom / chem_comp_bond ...chem_comp_atom / chem_comp_bond / database_2 / pdbx_initial_refinement_model / pdbx_struct_conn_angle / struct_conn
Item: _database_2.pdbx_DOI / _database_2.pdbx_database_accession ..._database_2.pdbx_DOI / _database_2.pdbx_database_accession / _pdbx_struct_conn_angle.ptnr1_auth_comp_id / _pdbx_struct_conn_angle.ptnr1_auth_seq_id / _pdbx_struct_conn_angle.ptnr1_label_atom_id / _pdbx_struct_conn_angle.ptnr1_label_comp_id / _pdbx_struct_conn_angle.ptnr1_label_seq_id / _pdbx_struct_conn_angle.ptnr2_auth_seq_id / _pdbx_struct_conn_angle.ptnr2_label_asym_id / _pdbx_struct_conn_angle.ptnr3_auth_asym_id / _pdbx_struct_conn_angle.ptnr3_auth_comp_id / _pdbx_struct_conn_angle.ptnr3_auth_seq_id / _pdbx_struct_conn_angle.ptnr3_label_asym_id / _pdbx_struct_conn_angle.ptnr3_label_atom_id / _pdbx_struct_conn_angle.ptnr3_label_comp_id / _pdbx_struct_conn_angle.ptnr3_label_seq_id / _pdbx_struct_conn_angle.value / _struct_conn.pdbx_dist_value / _struct_conn.ptnr1_auth_asym_id / _struct_conn.ptnr1_auth_comp_id / _struct_conn.ptnr1_auth_seq_id / _struct_conn.ptnr1_label_asym_id / _struct_conn.ptnr1_label_atom_id / _struct_conn.ptnr1_label_comp_id / _struct_conn.ptnr1_label_seq_id / _struct_conn.ptnr2_auth_asym_id / _struct_conn.ptnr2_auth_comp_id / _struct_conn.ptnr2_auth_seq_id / _struct_conn.ptnr2_label_asym_id / _struct_conn.ptnr2_label_atom_id / _struct_conn.ptnr2_label_comp_id / _struct_conn.ptnr2_label_seq_id

-
Structure visualization

Structure viewerMolecule:
MolmilJmol/JSmol

Downloads & links

-
Assembly

Deposited unit
2: 18S ribosomal RNA
S0: 40S ribosomal protein S0-A
S1: 40S ribosomal protein S1-A
S2: 40S ribosomal protein S2
S3: 40S ribosomal protein S3
S4: 40S ribosomal protein S4-A
S5: 40S ribosomal protein S5
S6: 40S ribosomal protein S6-A
S7: 40S ribosomal protein S7-A
S8: 40S ribosomal protein S8-A
S9: 40S ribosomal protein S9-A
C0: 40S ribosomal protein S10-A
C1: 40S ribosomal protein S11-A
C2: 40S ribosomal protein S12
C3: 40S ribosomal protein S13
C4: 40S ribosomal protein S14-A
C5: 40S ribosomal protein S15
C6: 40S ribosomal protein S16-A
C7: 40S ribosomal protein S17-A
C8: 40S ribosomal protein S18-A
C9: 40S ribosomal protein S19-A
D0: 40S ribosomal protein S20
D1: 40S ribosomal protein S21-A
D2: 40S ribosomal protein S22-A
D3: 40S ribosomal protein S23-A
D4: 40S ribosomal protein S24-A
D5: 40S ribosomal protein S25-A
D6: 40S ribosomal protein S26-B
D7: 40S ribosomal protein S27-A
D8: 40S ribosomal protein S28-A
D9: 40S ribosomal protein S29-A
E0: 40S ribosomal protein S30-A
E1: Ubiquitin-40S ribosomal protein S31
SR: Guanine nucleotide-binding protein subunit beta-like protein
SM: Suppressor protein STM1
1: 25S ribosomal RNA
3: 5S ribosomal RNA
4: 5.8S ribosomal RNA
L2: 60S ribosomal protein L2-A
L3: 60S ribosomal protein L3
L4: 60S ribosomal protein L4-A
L5: 60S ribosomal protein L5
L6: 60S ribosomal protein L6-A
L7: 60S ribosomal protein L7-A
L8: 60S ribosomal protein L8-A
L9: 60S ribosomal protein L9-A
M0: 60S ribosomal protein L10
M1: 60S ribosomal protein L11-B
M3: 60S ribosomal protein L13-A
M4: 60S ribosomal protein L14-A
M5: 60S ribosomal protein L15-A
M6: 60S ribosomal protein L16-A
M7: 60S ribosomal protein L17-A
M8: 60S ribosomal protein L18-A
M9: 60S ribosomal protein L19-A
N0: 60S ribosomal protein L20-A
N1: 60S ribosomal protein L21-A
N2: 60S ribosomal protein L22-A
N3: 60S ribosomal protein L23-A
N4: 60S ribosomal protein L24-A
N5: 60S ribosomal protein L25
N6: 60S ribosomal protein L26-A
N7: 60S ribosomal protein L27-A
N8: 60S ribosomal protein L28
N9: 60S ribosomal protein L29
O0: 60S ribosomal protein L30
O1: 60S ribosomal protein L31-A
O2: 60S ribosomal protein L32
O3: 60S ribosomal protein L33-A
O4: 60S ribosomal protein L34-A
O5: 60S ribosomal protein L35-A
O6: 60S ribosomal protein L36-A
O7: 60S ribosomal protein L37-A
O8: 60S ribosomal protein L38
O9: 60S ribosomal protein L39
Q0: Ubiquitin-60S ribosomal protein L40
Q1: 60S ribosomal protein L41-A
Q2: 60S ribosomal protein L42-A
Q3: 60S ribosomal protein L43-A
6: 18S ribosomal RNA
s0: 40S ribosomal protein S0-A
s1: 40S ribosomal protein S1-A
s2: 40S ribosomal protein S2
s3: 40S ribosomal protein S3
s4: 40S ribosomal protein S4-A
s5: 40S ribosomal protein S5
s6: 40S ribosomal protein S6-A
s7: 40S ribosomal protein S7-A
s8: 40S ribosomal protein S8-A
s9: 40S ribosomal protein S9-A
c0: 40S ribosomal protein S10-A
c1: 40S ribosomal protein S11-A
c2: 40S ribosomal protein S12
c3: 40S ribosomal protein S13
c4: 40S ribosomal protein S14-A
c5: 40S ribosomal protein S15
c6: 40S ribosomal protein S16-A
c7: 40S ribosomal protein S17-A
c8: 40S ribosomal protein S18-A
c9: 40S ribosomal protein S19-A
d0: 40S ribosomal protein S20
d1: 40S ribosomal protein S21-A
d2: 40S ribosomal protein S22-A
d3: 40S ribosomal protein S23-A
d4: 40S ribosomal protein S24-A
d5: 40S ribosomal protein S25-A
d6: 40S ribosomal protein S26-B
d7: 40S ribosomal protein S27-A
d8: 40S ribosomal protein S28-A
d9: 40S ribosomal protein S29-A
e0: 40S ribosomal protein S30-A
e1: Ubiquitin-40S ribosomal protein S31
sR: Guanine nucleotide-binding protein subunit beta-like protein
sM: Suppressor protein STM1
5: 25S ribosomal RNA
7: 5S ribosomal RNA
8: 5.8S ribosomal RNA
l2: 60S ribosomal protein L2-A
l3: 60S ribosomal protein L3
l4: 60S ribosomal protein L4-A
l5: 60S ribosomal protein L5
l6: 60S ribosomal protein L6-A
l7: 60S ribosomal protein L7-A
l8: 60S ribosomal protein L8-A
l9: 60S ribosomal protein L9-A
m0: 60S ribosomal protein L10
m1: 60S ribosomal protein L11-B
m3: 60S ribosomal protein L13-A
m4: 60S ribosomal protein L14-A
m5: 60S ribosomal protein L15-A
m6: 60S ribosomal protein L16-A
m7: 60S ribosomal protein L17-A
m8: 60S ribosomal protein L18-A
m9: 60S ribosomal protein L19-A
n0: 60S ribosomal protein L20-A
n1: 60S ribosomal protein L21-A
n2: 60S ribosomal protein L22-A
n3: 60S ribosomal protein L23-A
n4: 60S ribosomal protein L24-A
n5: 60S ribosomal protein L25
n6: 60S ribosomal protein L26-A
n7: 60S ribosomal protein L27-A
n8: 60S ribosomal protein L28
n9: 60S ribosomal protein L29
o0: 60S ribosomal protein L30
o1: 60S ribosomal protein L31-A
o2: 60S ribosomal protein L32
o3: 60S ribosomal protein L33-A
o4: 60S ribosomal protein L34-A
o5: 60S ribosomal protein L35-A
o6: 60S ribosomal protein L36-A
o7: 60S ribosomal protein L37-A
o8: 60S ribosomal protein L38
o9: 60S ribosomal protein L39
q0: Ubiquitin-60S ribosomal protein L40
q1: 60S ribosomal protein L41-A
q2: 60S ribosomal protein L42-A
q3: 60S ribosomal protein L43-A
p0: 60S acidic ribosomal protein P0
m2: UNKNOWN PROTEIN m2
p1: UNKNOWN PROTEIN p1
p2: UNKNOWN PROTEIN p2
hetero molecules


Theoretical massNumber of molelcules
Total (without water)6,631,8082722
Polymers6,271,321162
Non-polymers360,4872560
Water0
1
2: 18S ribosomal RNA
S0: 40S ribosomal protein S0-A
S1: 40S ribosomal protein S1-A
S2: 40S ribosomal protein S2
S3: 40S ribosomal protein S3
S4: 40S ribosomal protein S4-A
S5: 40S ribosomal protein S5
S6: 40S ribosomal protein S6-A
S7: 40S ribosomal protein S7-A
S8: 40S ribosomal protein S8-A
S9: 40S ribosomal protein S9-A
C0: 40S ribosomal protein S10-A
C1: 40S ribosomal protein S11-A
C2: 40S ribosomal protein S12
C3: 40S ribosomal protein S13
C4: 40S ribosomal protein S14-A
C5: 40S ribosomal protein S15
C6: 40S ribosomal protein S16-A
C7: 40S ribosomal protein S17-A
C8: 40S ribosomal protein S18-A
C9: 40S ribosomal protein S19-A
D0: 40S ribosomal protein S20
D1: 40S ribosomal protein S21-A
D2: 40S ribosomal protein S22-A
D3: 40S ribosomal protein S23-A
D4: 40S ribosomal protein S24-A
D5: 40S ribosomal protein S25-A
D6: 40S ribosomal protein S26-B
D7: 40S ribosomal protein S27-A
D8: 40S ribosomal protein S28-A
D9: 40S ribosomal protein S29-A
E0: 40S ribosomal protein S30-A
E1: Ubiquitin-40S ribosomal protein S31
SR: Guanine nucleotide-binding protein subunit beta-like protein
SM: Suppressor protein STM1
1: 25S ribosomal RNA
3: 5S ribosomal RNA
4: 5.8S ribosomal RNA
L2: 60S ribosomal protein L2-A
L3: 60S ribosomal protein L3
L4: 60S ribosomal protein L4-A
L5: 60S ribosomal protein L5
L6: 60S ribosomal protein L6-A
L7: 60S ribosomal protein L7-A
L8: 60S ribosomal protein L8-A
L9: 60S ribosomal protein L9-A
M0: 60S ribosomal protein L10
M1: 60S ribosomal protein L11-B
M3: 60S ribosomal protein L13-A
M4: 60S ribosomal protein L14-A
M5: 60S ribosomal protein L15-A
M6: 60S ribosomal protein L16-A
M7: 60S ribosomal protein L17-A
M8: 60S ribosomal protein L18-A
M9: 60S ribosomal protein L19-A
N0: 60S ribosomal protein L20-A
N1: 60S ribosomal protein L21-A
N2: 60S ribosomal protein L22-A
N3: 60S ribosomal protein L23-A
N4: 60S ribosomal protein L24-A
N5: 60S ribosomal protein L25
N6: 60S ribosomal protein L26-A
N7: 60S ribosomal protein L27-A
N8: 60S ribosomal protein L28
N9: 60S ribosomal protein L29
O0: 60S ribosomal protein L30
O1: 60S ribosomal protein L31-A
O2: 60S ribosomal protein L32
O3: 60S ribosomal protein L33-A
O4: 60S ribosomal protein L34-A
O5: 60S ribosomal protein L35-A
O6: 60S ribosomal protein L36-A
O7: 60S ribosomal protein L37-A
O8: 60S ribosomal protein L38
O9: 60S ribosomal protein L39
Q0: Ubiquitin-60S ribosomal protein L40
Q1: 60S ribosomal protein L41-A
Q2: 60S ribosomal protein L42-A
Q3: 60S ribosomal protein L43-A
hetero molecules


Theoretical massNumber of molelcules
Total (without water)3,284,6691322
Polymers3,107,94579
Non-polymers176,7241243
Water0
TypeNameSymmetry operationNumber
identity operation1_555x,y,z1
2
6: 18S ribosomal RNA
s0: 40S ribosomal protein S0-A
s1: 40S ribosomal protein S1-A
s2: 40S ribosomal protein S2
s3: 40S ribosomal protein S3
s4: 40S ribosomal protein S4-A
s5: 40S ribosomal protein S5
s6: 40S ribosomal protein S6-A
s7: 40S ribosomal protein S7-A
s8: 40S ribosomal protein S8-A
s9: 40S ribosomal protein S9-A
c0: 40S ribosomal protein S10-A
c1: 40S ribosomal protein S11-A
c2: 40S ribosomal protein S12
c3: 40S ribosomal protein S13
c4: 40S ribosomal protein S14-A
c5: 40S ribosomal protein S15
c6: 40S ribosomal protein S16-A
c7: 40S ribosomal protein S17-A
c8: 40S ribosomal protein S18-A
c9: 40S ribosomal protein S19-A
d0: 40S ribosomal protein S20
d1: 40S ribosomal protein S21-A
d2: 40S ribosomal protein S22-A
d3: 40S ribosomal protein S23-A
d4: 40S ribosomal protein S24-A
d5: 40S ribosomal protein S25-A
d6: 40S ribosomal protein S26-B
d7: 40S ribosomal protein S27-A
d8: 40S ribosomal protein S28-A
d9: 40S ribosomal protein S29-A
e0: 40S ribosomal protein S30-A
e1: Ubiquitin-40S ribosomal protein S31
sR: Guanine nucleotide-binding protein subunit beta-like protein
sM: Suppressor protein STM1
5: 25S ribosomal RNA
7: 5S ribosomal RNA
8: 5.8S ribosomal RNA
l2: 60S ribosomal protein L2-A
l3: 60S ribosomal protein L3
l4: 60S ribosomal protein L4-A
l5: 60S ribosomal protein L5
l6: 60S ribosomal protein L6-A
l7: 60S ribosomal protein L7-A
l8: 60S ribosomal protein L8-A
l9: 60S ribosomal protein L9-A
m0: 60S ribosomal protein L10
m1: 60S ribosomal protein L11-B
m3: 60S ribosomal protein L13-A
m4: 60S ribosomal protein L14-A
m5: 60S ribosomal protein L15-A
m6: 60S ribosomal protein L16-A
m7: 60S ribosomal protein L17-A
m8: 60S ribosomal protein L18-A
m9: 60S ribosomal protein L19-A
n0: 60S ribosomal protein L20-A
n1: 60S ribosomal protein L21-A
n2: 60S ribosomal protein L22-A
n3: 60S ribosomal protein L23-A
n4: 60S ribosomal protein L24-A
n5: 60S ribosomal protein L25
n6: 60S ribosomal protein L26-A
n7: 60S ribosomal protein L27-A
n8: 60S ribosomal protein L28
n9: 60S ribosomal protein L29
o0: 60S ribosomal protein L30
o1: 60S ribosomal protein L31-A
o2: 60S ribosomal protein L32
o3: 60S ribosomal protein L33-A
o4: 60S ribosomal protein L34-A
o5: 60S ribosomal protein L35-A
o6: 60S ribosomal protein L36-A
o7: 60S ribosomal protein L37-A
o8: 60S ribosomal protein L38
o9: 60S ribosomal protein L39
q0: Ubiquitin-60S ribosomal protein L40
q1: 60S ribosomal protein L41-A
q2: 60S ribosomal protein L42-A
q3: 60S ribosomal protein L43-A
p0: 60S acidic ribosomal protein P0
m2: UNKNOWN PROTEIN m2
p1: UNKNOWN PROTEIN p1
p2: UNKNOWN PROTEIN p2
hetero molecules


Theoretical massNumber of molelcules
Total (without water)3,347,1391400
Polymers3,163,37683
Non-polymers183,7631317
Water0
TypeNameSymmetry operationNumber
identity operation1_555x,y,z1
Unit cell
Length a, b, c (Å)434.390, 285.580, 303.060
Angle α, β, γ (deg.)90.000, 98.990, 90.000
Int Tables number4
Space group name H-MP1211
Detailsthere are 2 biological units in the asymetric unit (segid *A and segid *B)

-
Components

-
RNA chain , 4 types, 8 molecules 26153748

#1: RNA chain 18S ribosomal RNA / / RNA (1750-MER)


Mass: 579761.938 Da / Num. of mol.: 2 / Source method: isolated from a natural source / Source: (natural) Saccharomyces cerevisiae S288c (yeast) / References: GenBank: 1262303
#36: RNA chain 25S ribosomal RNA /


Mass: 1097493.875 Da / Num. of mol.: 2 / Source method: isolated from a natural source / Source: (natural) Saccharomyces cerevisiae S288c (yeast) / References: TPG: 329138943
#37: RNA chain 5S ribosomal RNA / / RNA (121-MER)


Mass: 38951.105 Da / Num. of mol.: 2 / Source method: isolated from a natural source / Source: (natural) Saccharomyces cerevisiae S288c (yeast) / References: TPG: 329138943
#38: RNA chain 5.8S ribosomal RNA / / RNA (158-MER)


Mass: 50682.922 Da / Num. of mol.: 2 / Source method: isolated from a natural source / Source: (natural) Saccharomyces cerevisiae S288c (yeast) / References: GenBank: 618731124

+
40S ribosomal protein ... , 32 types, 62 molecules S0s0S1s1S2s2S3s3S4s4S5s5S6s6S7s7S8s8S9s9C0c0C1c1C2c2C3c3C4c4...

#2: Protein 40S ribosomal protein S0-A / Ribosome / Nucleic acid-binding protein NAB1A


Mass: 27920.133 Da / Num. of mol.: 2 / Source method: isolated from a natural source / Source: (natural) Saccharomyces cerevisiae S288c (yeast) / References: UniProt: P32905
#3: Protein 40S ribosomal protein S1-A / Ribosome / RP10A


Mass: 28667.275 Da / Num. of mol.: 2 / Source method: isolated from a natural source / Source: (natural) Saccharomyces cerevisiae S288c (yeast) / References: UniProt: P33442
#4: Protein 40S ribosomal protein S2 / / Omnipotent suppressor protein SUP44 / RP12 / S4 / YS5


Mass: 27359.629 Da / Num. of mol.: 2 / Source method: isolated from a natural source / Source: (natural) Saccharomyces cerevisiae S288c (yeast) / References: UniProt: P25443
#5: Protein 40S ribosomal protein S3 / / RP13 / YS3


Mass: 26411.596 Da / Num. of mol.: 2 / Source method: isolated from a natural source / Source: (natural) Saccharomyces cerevisiae S288c (yeast) / References: UniProt: P05750
#6: Protein 40S ribosomal protein S4-A / Ribosome / RP5 / S7 / YS6


Mass: 29338.133 Da / Num. of mol.: 2 / Source method: isolated from a natural source / Source: (natural) Saccharomyces cerevisiae S288c (yeast) / References: UniProt: P0CX35
#7: Protein 40S ribosomal protein S5 / / RP14 / S2 / YS8


Mass: 24941.402 Da / Num. of mol.: 2 / Source method: isolated from a natural source / Source: (natural) Saccharomyces cerevisiae S288c (yeast) / References: UniProt: P26783
#8: Protein 40S ribosomal protein S6-A / Ribosome / RP9 / S10 / YS4


Mass: 27054.486 Da / Num. of mol.: 2 / Source method: isolated from a natural source / Source: (natural) Saccharomyces cerevisiae S288c (yeast) / References: UniProt: P0CX37
#9: Protein 40S ribosomal protein S7-A / Ribosome / RP30 / RP40


Mass: 21527.014 Da / Num. of mol.: 2 / Source method: isolated from a natural source / Source: (natural) Saccharomyces cerevisiae S288c (yeast) / References: UniProt: P26786
#10: Protein 40S ribosomal protein S8-A / Ribosome / RP19 / S14 / YS9


Mass: 22537.803 Da / Num. of mol.: 2 / Source method: isolated from a natural source / Source: (natural) Saccharomyces cerevisiae S288c (yeast) / References: UniProt: P0CX39
#11: Protein 40S ribosomal protein S9-A / Ribosome / RP21 / S13 / YP28 / YS11


Mass: 22356.695 Da / Num. of mol.: 2 / Source method: isolated from a natural source / Source: (natural) Saccharomyces cerevisiae S288c (yeast) / References: UniProt: O13516
#12: Protein 40S ribosomal protein S10-A / Ribosome


Mass: 12771.471 Da / Num. of mol.: 2 / Source method: isolated from a natural source / Source: (natural) Saccharomyces cerevisiae S288c (yeast) / References: UniProt: Q08745
#13: Protein 40S ribosomal protein S11-A / Ribosome / RP41 / S18 / YS12


Mass: 17668.766 Da / Num. of mol.: 2 / Source method: isolated from a natural source / Source: (natural) Saccharomyces cerevisiae S288c (yeast) / References: UniProt: P0CX47
#14: Protein 40S ribosomal protein S12 /


Mass: 15385.485 Da / Num. of mol.: 2 / Source method: isolated from a natural source / Source: (natural) Saccharomyces cerevisiae S288c (yeast) / References: UniProt: P48589
#15: Protein 40S ribosomal protein S13 / / S27a / YS15


Mass: 16928.748 Da / Num. of mol.: 2 / Source method: isolated from a natural source / Source: (natural) Saccharomyces cerevisiae S288c (yeast) / References: UniProt: P05756
#16: Protein 40S ribosomal protein S14-A / Ribosome / RP59A


Mass: 14431.462 Da / Num. of mol.: 2 / Source method: isolated from a natural source / Source: (natural) Saccharomyces cerevisiae S288c (yeast) / References: UniProt: P06367
#17: Protein 40S ribosomal protein S15 / / RIG protein / RP52 / S21 / YS21


Mass: 15830.597 Da / Num. of mol.: 2 / Source method: isolated from a natural source / Source: (natural) Saccharomyces cerevisiae S288c (yeast) / References: UniProt: Q01855
#18: Protein 40S ribosomal protein S16-A / Ribosome / RP61R


Mass: 15746.292 Da / Num. of mol.: 2 / Source method: isolated from a natural source / Source: (natural) Saccharomyces cerevisiae S288c (yeast) / References: UniProt: P0CX51
#19: Protein 40S ribosomal protein S17-A / Ribosome / RP51A


Mass: 15820.413 Da / Num. of mol.: 2 / Source method: isolated from a natural source / Source: (natural) Saccharomyces cerevisiae S288c (yeast) / References: UniProt: P02407
#20: Protein 40S ribosomal protein S18-A / Ribosome


Mass: 16940.443 Da / Num. of mol.: 2 / Source method: isolated from a natural source / Source: (natural) Saccharomyces cerevisiae S288c (yeast) / References: UniProt: P0CX55
#21: Protein 40S ribosomal protein S19-A / Ribosome / RP55A / S16a / YP45 / YS16A


Mass: 15810.930 Da / Num. of mol.: 2 / Source method: isolated from a natural source / Source: (natural) Saccharomyces cerevisiae S288c (yeast) / References: UniProt: P07280
#22: Protein 40S ribosomal protein S20 /


Mass: 13797.850 Da / Num. of mol.: 2 / Source method: isolated from a natural source / Source: (natural) Saccharomyces cerevisiae S288c (yeast) / References: UniProt: P38701
#23: Protein 40S ribosomal protein S21-A / Ribosome / S26 / YS25


Mass: 9758.829 Da / Num. of mol.: 2 / Source method: isolated from a natural source / Source: (natural) Saccharomyces cerevisiae S288c (yeast) / References: UniProt: P0C0V8
#24: Protein 40S ribosomal protein S22-A / Ribosome / RP50 / S24 / YP58 / YS22


Mass: 14518.867 Da / Num. of mol.: 2 / Source method: isolated from a natural source / Source: (natural) Saccharomyces cerevisiae S288c (yeast) / References: UniProt: P0C0W1
#25: Protein 40S ribosomal protein S23-A / Ribosome / RP37 / S28 / YS14


Mass: 15942.699 Da / Num. of mol.: 2 / Source method: isolated from a natural source / Source: (natural) Saccharomyces cerevisiae S288c (yeast) / References: UniProt: P0CX29
#26: Protein 40S ribosomal protein S24-A / Ribosome / RP50


Mass: 15231.650 Da / Num. of mol.: 2 / Source method: isolated from a natural source / Source: (natural) Saccharomyces cerevisiae S288c (yeast) / References: UniProt: P0CX31
#27: Protein 40S ribosomal protein S25-A / Ribosome / RP45 / S31 / YS23


Mass: 11936.076 Da / Num. of mol.: 2 / Source method: isolated from a natural source / Source: (natural) Saccharomyces cerevisiae S288c (yeast) / References: UniProt: Q3E792
#28: Protein 40S ribosomal protein S26-B / Ribosome


Mass: 11022.989 Da / Num. of mol.: 2 / Source method: isolated from a natural source / Source: (natural) Saccharomyces cerevisiae S288c (yeast) / References: UniProt: P39939
#29: Protein 40S ribosomal protein S27-A / Ribosome / RP61 / YS20


Mass: 8762.195 Da / Num. of mol.: 2 / Source method: isolated from a natural source / Source: (natural) Saccharomyces cerevisiae S288c (yeast) / References: UniProt: P35997
#30: Protein 40S ribosomal protein S28-A / Ribosome / S33 / YS27


Mass: 7474.652 Da / Num. of mol.: 2 / Source method: isolated from a natural source / Source: (natural) Saccharomyces cerevisiae S288c (yeast) / References: UniProt: Q3E7X9
#31: Protein 40S ribosomal protein S29-A / Ribosome / S36 / YS29


Mass: 6544.527 Da / Num. of mol.: 2 / Source method: isolated from a natural source / Source: (natural) Saccharomyces cerevisiae S288c (yeast) / References: UniProt: P41057
#32: Protein 40S ribosomal protein S30-A / Ribosome


Mass: 6779.086 Da / Num. of mol.: 1 / Source method: isolated from a natural source / Source: (natural) Saccharomyces cerevisiae S288c (yeast) / References: UniProt: P0CX33
#80: Protein 40S ribosomal protein S30-A / Ribosome


Mass: 7006.346 Da / Num. of mol.: 1 / Source method: isolated from a natural source / Source: (natural) Saccharomyces cerevisiae S288c (yeast) / References: UniProt: P0CX33

-
Protein , 5 types, 9 molecules E1e1SRsRSMsMQ0q0p0

#33: Protein Ubiquitin-40S ribosomal protein S31


Mass: 8717.488 Da / Num. of mol.: 2 / Source method: isolated from a natural source / Source: (natural) Saccharomyces cerevisiae S288c (yeast) / References: UniProt: P05759
#34: Protein Guanine nucleotide-binding protein subunit beta-like protein / Receptor for activated C kinase / Receptor of activated protein kinase C 1 / RACK1


Mass: 34710.023 Da / Num. of mol.: 2 / Source method: isolated from a natural source / Source: (natural) Saccharomyces cerevisiae S288c (yeast) / References: UniProt: P38011
#35: Protein Suppressor protein STM1 / 3BP1 / GU4 nucleic-binding protein 2 / G4p2 protein / POP2 multicopy suppressor protein 4 / ...3BP1 / GU4 nucleic-binding protein 2 / G4p2 protein / POP2 multicopy suppressor protein 4 / Ribosomal subunits association factor / AF / TOM1 suppressor protein 1 / Triplex-binding protein 1


Mass: 30048.010 Da / Num. of mol.: 2 / Source method: isolated from a natural source / Source: (natural) Saccharomyces cerevisiae S288c (yeast) / References: UniProt: P39015
#76: Protein Ubiquitin-60S ribosomal protein L40


Mass: 6032.321 Da / Num. of mol.: 2 / Source method: isolated from a natural source / Source: (natural) Saccharomyces cerevisiae S288c (yeast) / References: UniProt: P0CH08
#81: Protein 60S acidic ribosomal protein P0 / / A0 / L10E


Mass: 33617.930 Da / Num. of mol.: 1 / Source method: isolated from a natural source / Source: (natural) Saccharomyces cerevisiae S288c (yeast) / References: UniProt: P05317

+
60S ribosomal protein ... , 40 types, 80 molecules L2l2L3l3L4l4L5l5L6l6L7l7L8l8L9l9M0m0M1m1M3m3M4m4M5m5M6m6M7m7...

#39: Protein 60S ribosomal protein L2-A / Ribosome / L5 / RP8 / YL6


Mass: 27332.377 Da / Num. of mol.: 2 / Source method: isolated from a natural source / Source: (natural) Saccharomyces cerevisiae S288c (yeast) / References: UniProt: P0CX45
#40: Protein 60S ribosomal protein L3 / / Maintenance of killer protein 8 / RP1 / Trichodermin resistance protein / YL1


Mass: 43719.602 Da / Num. of mol.: 2 / Source method: isolated from a natural source / Source: (natural) Saccharomyces cerevisiae S288c (yeast) / References: UniProt: P14126
#41: Protein 60S ribosomal protein L4-A / Ribosome / L2 / RP2 / YL2


Mass: 39027.926 Da / Num. of mol.: 2 / Source method: isolated from a natural source / Source: (natural) Saccharomyces cerevisiae S288c (yeast) / References: UniProt: P10664
#42: Protein 60S ribosomal protein L5 / / L1 / L1a / Ribosomal 5S RNA-binding protein / YL3


Mass: 33633.633 Da / Num. of mol.: 2 / Source method: isolated from a natural source / Source: (natural) Saccharomyces cerevisiae S288c (yeast) / References: UniProt: P26321
#43: Protein 60S ribosomal protein L6-A / Ribosome / L17 / RP18 / YL16


Mass: 19869.369 Da / Num. of mol.: 2 / Source method: isolated from a natural source / Source: (natural) Saccharomyces cerevisiae S288c (yeast) / References: UniProt: Q02326
#44: Protein 60S ribosomal protein L7-A / Ribosome / L6 / RP11 / YL8


Mass: 27555.084 Da / Num. of mol.: 2 / Source method: isolated from a natural source / Source: (natural) Saccharomyces cerevisiae S288c (yeast) / References: UniProt: P05737
#45: Protein 60S ribosomal protein L8-A / Ribosome / L4 / L4-2 / L7a-1 / Maintenance of killer protein 7 / RP6 / YL5


Mass: 28044.621 Da / Num. of mol.: 2 / Source method: isolated from a natural source / Source: (natural) Saccharomyces cerevisiae S288c (yeast) / References: UniProt: P17076
#46: Protein 60S ribosomal protein L9-A / Ribosome / L8 / RP24 / YL11


Mass: 21605.061 Da / Num. of mol.: 2 / Source method: isolated from a natural source / Source: (natural) Saccharomyces cerevisiae S288c (yeast) / References: UniProt: P05738
#47: Protein 60S ribosomal protein L10 / / L9 / Ubiquinol-cytochrome C reductase complex subunit VI-requiring protein


Mass: 25279.271 Da / Num. of mol.: 2 / Source method: isolated from a natural source / Source: (natural) Saccharomyces cerevisiae S288c (yeast) / References: UniProt: P41805
#48: Protein 60S ribosomal protein L11-B / Ribosome / L16 / RP39 / YL22


Mass: 19654.520 Da / Num. of mol.: 2 / Source method: isolated from a natural source / Source: (natural) Saccharomyces cerevisiae S288c (yeast) / References: UniProt: Q3E757
#49: Protein 60S ribosomal protein L13-A / Ribosome


Mass: 22472.967 Da / Num. of mol.: 2 / Source method: isolated from a natural source / Source: (natural) Saccharomyces cerevisiae S288c (yeast) / References: UniProt: Q12690
#50: Protein 60S ribosomal protein L14-A / Ribosome


Mass: 15063.870 Da / Num. of mol.: 2 / Source method: isolated from a natural source / Source: (natural) Saccharomyces cerevisiae S288c (yeast) / References: UniProt: P36105
#51: Protein 60S ribosomal protein L15-A / Ribosome / L13 / RP15R / YL10 / YP18


Mass: 24351.162 Da / Num. of mol.: 2 / Source method: isolated from a natural source / Source: (natural) Saccharomyces cerevisiae S288c (yeast) / References: UniProt: P05748
#52: Protein 60S ribosomal protein L16-A / Ribosome / L13a / L21 / RP22 / YL15


Mass: 22116.029 Da / Num. of mol.: 2 / Source method: isolated from a natural source / Source: (natural) Saccharomyces cerevisiae S288c (yeast) / References: UniProt: P26784
#53: Protein 60S ribosomal protein L17-A / Ribosome / L20A / YL17


Mass: 20458.322 Da / Num. of mol.: 2 / Source method: isolated from a natural source / Source: (natural) Saccharomyces cerevisiae S288c (yeast) / References: UniProt: P05740
#54: Protein 60S ribosomal protein L18-A / Ribosome / RP28


Mass: 20478.059 Da / Num. of mol.: 2 / Source method: isolated from a natural source / Source: (natural) Saccharomyces cerevisiae S288c (yeast) / References: UniProt: P0CX49
#55: Protein 60S ribosomal protein L19-A / Ribosome / L23 / RP15L / RP33 / YL14


Mass: 21631.121 Da / Num. of mol.: 2 / Source method: isolated from a natural source / Source: (natural) Saccharomyces cerevisiae S288c (yeast) / References: UniProt: P0CX82
#56: Protein 60S ribosomal protein L20-A / Ribosome / L18a


Mass: 20478.852 Da / Num. of mol.: 2 / Source method: isolated from a natural source / Source: (natural) Saccharomyces cerevisiae S288c (yeast) / References: UniProt: P0CX23
#57: Protein 60S ribosomal protein L21-A / Ribosome


Mass: 18148.066 Da / Num. of mol.: 2 / Source method: isolated from a natural source / Source: (natural) Saccharomyces cerevisiae S288c (yeast) / References: UniProt: Q02753
#58: Protein 60S ribosomal protein L22-A / Ribosome / L1c / RP4 / YL31


Mass: 13580.163 Da / Num. of mol.: 2 / Source method: isolated from a natural source / Source: (natural) Saccharomyces cerevisiae S288c (yeast) / References: UniProt: P05749
#59: Protein 60S ribosomal protein L23-A / Ribosome / L17a / YL32


Mass: 14362.755 Da / Num. of mol.: 2 / Source method: isolated from a natural source / Source: (natural) Saccharomyces cerevisiae S288c (yeast) / References: UniProt: P0CX41
#60: Protein 60S ribosomal protein L24-A / Ribosome / L30 / RP29 / YL21


Mass: 17661.717 Da / Num. of mol.: 2 / Source method: isolated from a natural source / Source: (natural) Saccharomyces cerevisiae S288c (yeast) / References: UniProt: P04449
#61: Protein 60S ribosomal protein L25 / / RP16L / YL25 / YP42'


Mass: 15656.417 Da / Num. of mol.: 2 / Source method: isolated from a natural source / Source: (natural) Saccharomyces cerevisiae S288c (yeast) / References: UniProt: P04456
#62: Protein 60S ribosomal protein L26-A / Ribosome / L33 / YL33


Mass: 14134.588 Da / Num. of mol.: 2 / Source method: isolated from a natural source / Source: (natural) Saccharomyces cerevisiae S288c (yeast) / References: UniProt: P05743
#63: Protein 60S ribosomal protein L27-A / Ribosome


Mass: 15437.166 Da / Num. of mol.: 2 / Source method: isolated from a natural source / Source: (natural) Saccharomyces cerevisiae S288c (yeast) / References: UniProt: P0C2H6
#64: Protein 60S ribosomal protein L28 / / L27a / L29 / RP44 / RP62 / YL24


Mass: 16630.471 Da / Num. of mol.: 2 / Source method: isolated from a natural source / Source: (natural) Saccharomyces cerevisiae S288c (yeast) / References: UniProt: P02406
#65: Protein 60S ribosomal protein L29 / / YL43


Mass: 6560.688 Da / Num. of mol.: 2 / Source method: isolated from a natural source / Source: (natural) Saccharomyces cerevisiae S288c (yeast) / References: UniProt: P05747
#66: Protein 60S ribosomal protein L30 / / L32 / RP73 / YL38


Mass: 11299.168 Da / Num. of mol.: 2 / Source method: isolated from a natural source / Source: (natural) Saccharomyces cerevisiae S288c (yeast) / References: UniProt: P14120
#67: Protein 60S ribosomal protein L31-A / Ribosome / L34 / YL28


Mass: 12848.962 Da / Num. of mol.: 2 / Source method: isolated from a natural source / Source: (natural) Saccharomyces cerevisiae S288c (yeast) / References: UniProt: P0C2H8
#68: Protein 60S ribosomal protein L32 /


Mass: 14678.246 Da / Num. of mol.: 2 / Source method: isolated from a natural source / Source: (natural) Saccharomyces cerevisiae S288c (yeast) / References: UniProt: P38061
#69: Protein 60S ribosomal protein L33-A / Ribosome / L37 / RP47 / YL37


Mass: 12045.935 Da / Num. of mol.: 2 / Source method: isolated from a natural source / Source: (natural) Saccharomyces cerevisiae S288c (yeast) / References: UniProt: P05744
#70: Protein 60S ribosomal protein L34-A / Ribosome


Mass: 13542.001 Da / Num. of mol.: 2 / Source method: isolated from a natural source / Source: (natural) Saccharomyces cerevisiae S288c (yeast) / References: UniProt: P87262
#71: Protein 60S ribosomal protein L35-A / Ribosome


Mass: 13811.444 Da / Num. of mol.: 2 / Source method: isolated from a natural source / Source: (natural) Saccharomyces cerevisiae S288c (yeast) / References: UniProt: P0CX84
#72: Protein 60S ribosomal protein L36-A / Ribosome / L39 / YL39


Mass: 11020.063 Da / Num. of mol.: 2 / Source method: isolated from a natural source / Source: (natural) Saccharomyces cerevisiae S288c (yeast) / References: UniProt: P05745
#73: Protein 60S ribosomal protein L37-A / Ribosome / L43 / YL35 / YP55


Mass: 9746.199 Da / Num. of mol.: 2 / Source method: isolated from a natural source / Source: (natural) Saccharomyces cerevisiae S288c (yeast) / References: UniProt: P49166
#74: Protein 60S ribosomal protein L38 /


Mass: 8714.363 Da / Num. of mol.: 2 / Source method: isolated from a natural source / Source: (natural) Saccharomyces cerevisiae S288c (yeast) / References: UniProt: P49167
#75: Protein/peptide 60S ribosomal protein L39 / / L46 / YL40


Mass: 6227.444 Da / Num. of mol.: 2 / Source method: isolated from a natural source / Source: (natural) Saccharomyces cerevisiae S288c (yeast) / References: UniProt: P04650
#77: Protein/peptide 60S ribosomal protein L41-A / Ribosome


Mass: 3354.243 Da / Num. of mol.: 2 / Source method: isolated from a natural source / Source: (natural) Saccharomyces cerevisiae S288c (yeast)
#78: Protein 60S ribosomal protein L42-A / Ribosome / L41 / YL27 / YP44


Mass: 12115.462 Da / Num. of mol.: 2 / Source method: isolated from a natural source / Source: (natural) Saccharomyces cerevisiae S288c (yeast) / References: UniProt: P0CX27
#79: Protein 60S ribosomal protein L43-A / Ribosome / L37a / YL35


Mass: 9981.756 Da / Num. of mol.: 2 / Source method: isolated from a natural source / Source: (natural) Saccharomyces cerevisiae S288c (yeast) / References: UniProt: P0CX25

-
UNKNOWN PROTEIN ... , 3 types, 3 molecules m2p1p2

#82: Protein UNKNOWN PROTEIN m2


Mass: 13634.798 Da / Num. of mol.: 1 / Source method: isolated from a natural source / Source: (natural) Saccharomyces cerevisiae S288c (yeast)
#83: Protein/peptide UNKNOWN PROTEIN p1


Mass: 4017.944 Da / Num. of mol.: 1 / Source method: isolated from a natural source / Source: (natural) Saccharomyces cerevisiae S288c (yeast)
#84: Protein/peptide UNKNOWN PROTEIN p2


Mass: 3932.839 Da / Num. of mol.: 1 / Source method: isolated from a natural source / Source: (natural) Saccharomyces cerevisiae S288c (yeast)

-
Non-polymers , 4 types, 2560 molecules

#85: Chemical...
ChemComp-MG / MAGNESIUM ION


Mass: 24.305 Da / Num. of mol.: 1410 / Source method: obtained synthetically / Formula: Mg
#86: Chemical...
ChemComp-OHX / osmium (III) hexammine / osmium(6+) hexaazanide


Mass: 286.365 Da / Num. of mol.: 1132 / Source method: obtained synthetically / Formula: H12N6Os
#87: Chemical
ChemComp-ZN / ZINC ION


Mass: 65.409 Da / Num. of mol.: 16 / Source method: obtained synthetically / Formula: Zn
#88: Chemical ChemComp-3L2 / (4S,5R,10E,12Z,16R,16aS,17S,18R,19aR,23aR)-4-hydroxy-5,16a,21-trimethyl-4,5,6,7,16,16a,22,23-octahydro-3H,18H,19aH-spiro[16,18-methano[1,6,12]trioxacyclooctadecino[3,4-d]chromene-17,2'-oxirane]-3,9,14-trione / Verrucarin A / Verrucarin A


Mass: 502.553 Da / Num. of mol.: 2 / Source method: obtained synthetically / Formula: C27H34O9 / Comment: toxin*YM

-
Experimental details

-
Experiment

ExperimentMethod: X-RAY DIFFRACTION / Number of used crystals: 1

-
Sample preparation

CrystalDensity Matthews: 3.02 Å3/Da / Density % sol: 59.3 %
Crystal growTemperature: 277 K / Method: vapor diffusion, hanging drop / pH: 7.5
Details: PEG 20K, KSCN, Mg Acetate, Tris-Acetate, Glycerol, Spermidine

-
Data collection

DiffractionMean temperature: 100 K
Diffraction sourceSource: SYNCHROTRON / Site: SOLEIL / Beamline: PROXIMA 1 / Wavelength: 1 Å
DetectorType: DECTRIS PILATUS 6M / Detector: PIXEL / Date: Jul 1, 2013
RadiationProtocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray
Radiation wavelengthWavelength: 1 Å / Relative weight: 1
ReflectionResolution: 3.2→49.88 Å / Num. obs: 1195096 / % possible obs: 99.9 % / Observed criterion σ(I): -3 / Redundancy: 4.11 % / Biso Wilson estimate: 72.42 Å2 / Rmerge F obs: 0.967 / Rmerge(I) obs: 0.345 / Rrim(I) all: 0.395 / Χ2: 0.925 / Net I/σ(I): 5.59 / Num. measured all: 4861213
Reflection shell

Diffraction-ID: 1 / Rejects: 0

Resolution (Å)Highest resolution (Å)Rmerge F obsRmerge(I) obsMean I/σ(I) obsNum. measured obsNum. possibleNum. unique obsRrim(I) all% possible all
3.2-3.30.282.2370.954323661052651051102.55499.9
3.3-3.40.3631.6581.236804293322932001.90899.9
3.4-3.50.4861.2831.5334262882836827621.46699.9
3.5-40.7410.742.6412265313013183011060.84699.9
4-50.9350.3115.6912138292989072986670.35599.9
5-100.9850.13710.7311237342752392750410.15699.9
10-200.9960.05221.8413666434806346660.0699.6
20-300.9980.03430.5913944356335200.0498.8
30-400.9970.03232.7529818818110.03892.1
40-500.9970.03514.594943232130.04565.9
50349

-
Processing

Software
NameVersionClassification
XDSdata reduction
PHENIX(phenix.refine: dev_1702)refinement
PDB_EXTRACT3.14data extraction
XSCALEdata scaling
XSCALEdata reduction
RefinementMethod to determine structure: MOLECULAR REPLACEMENT
Starting model: 3U5B, 3U5C, 3U5D, 3U5E, 3U5F, 3U5G, 3U5H, 3U5I3u5bPDB Unreleased entry3u5cPDB Unreleased entry3u5dPDB Unreleased entry3u5ePDB Unreleased entry3u5fPDB Unreleased entry3u5gPDB ...Starting model: 3U5B, 3U5C, 3U5D, 3U5E, 3U5F, 3U5G, 3U5H, 3U5I

3u5b
PDB Unreleased entry

3u5c
PDB Unreleased entry

3u5d
PDB Unreleased entry

3u5e
PDB Unreleased entry

3u5f
PDB Unreleased entry

3u5g
PDB Unreleased entry

3u5h
PDB Unreleased entry

3u5i
PDB Unreleased entry


Resolution: 3.2→49.88 Å / SU ML: 0.44 / Cross valid method: FREE R-VALUE / σ(F): 0 / Phase error: 25.76 / Stereochemistry target values: ML
RfactorNum. reflection% reflection
Rfree0.2619 23895 2 %
Rwork0.2122 1170845 -
obs0.2132 1194740 99.86 %
Solvent computationShrinkage radii: 0.9 Å / VDW probe radii: 1.11 Å / Solvent model: FLAT BULK SOLVENT MODEL
Displacement parametersBiso max: 273.29 Å2 / Biso mean: 65.147 Å2 / Biso min: 10.72 Å2
Refinement stepCycle: final / Resolution: 3.2→49.88 Å
ProteinNucleic acidLigandSolventTotal
Num. atoms179692 222116 11002 0 412810
Biso mean--111.26 --
Num. residues----32990
Refine LS restraints
Refine-IDTypeDev idealNumber
X-RAY DIFFRACTIONf_bond_d0.011438213
X-RAY DIFFRACTIONf_angle_d1.546650261
X-RAY DIFFRACTIONf_chiral_restr0.06179434
X-RAY DIFFRACTIONf_plane_restr0.00741796
X-RAY DIFFRACTIONf_dihedral_angle_d19.015194820
LS refinement shell

Refine-ID: X-RAY DIFFRACTION / Total num. of bins used: 30

Resolution (Å)Rfactor RfreeNum. reflection RfreeRfactor RworkNum. reflection RworkNum. reflection all% reflection obs (%)
3.2-3.23630.34577940.30823888039674100
3.2363-3.27440.35727930.3043889439687100
3.2744-3.31430.33897950.2913898439779100
3.3143-3.35630.31147940.27483893539729100
3.3563-3.40040.32237950.27283893439729100
3.4004-3.4470.31817950.27023894439739100
3.447-3.49620.3087930.26143889939692100
3.4962-3.54840.31187950.2543895239747100
3.5484-3.60380.29167960.23753899039786100
3.6038-3.66290.28447960.23353896539761100
3.6629-3.72610.29317940.22883895839752100
3.7261-3.79380.28237980.2243904939847100
3.7938-3.86670.27067950.21133895739752100
3.8667-3.94560.25627960.19923902339819100
3.9456-4.03140.25517950.19613895939754100
4.0314-4.12510.23927960.18953901139807100
4.1251-4.22820.2537950.1913896939764100
4.2282-4.34250.22987970.18133903739834100
4.3425-4.47020.22957970.17943904539842100
4.4702-4.61440.24617970.1833906239859100
4.6144-4.77920.23657960.17783899539791100
4.7792-4.97040.23577980.18283912239920100
4.9704-5.19630.22437980.17353911539913100
5.1963-5.470.22217980.17663906139859100
5.47-5.81220.23257970.18413907939876100
5.8122-6.26020.24718000.19023916039960100
6.2602-6.88870.26628000.20533921840018100
6.8887-7.88220.25658000.20723922540025100
7.8822-9.91790.26088020.22183928640088100
9.9179-49.89530.24988000.2349391373993798
Refinement TLS params.

Method: refined / Refine-ID: X-RAY DIFFRACTION

IDL112)L122)L132)L222)L232)L332)S11 (Å °)S12 (Å °)S13 (Å °)S21 (Å °)S22 (Å °)S23 (Å °)S31 (Å °)S32 (Å °)S33 (Å °)T112)T122)T132)T222)T232)T332)Origin x (Å)Origin y (Å)Origin z (Å)
10.6165-0.0877-0.53140.27280.07860.90210.0579-0.1043-0.18090.2432-0.09470.05820.12650.03680.01550.635-0.38470.47481.0502-0.32351.0857-110.4713-8.0194109.7736
20.4387-0.40560.12610.6339-0.05250.2676-0.0543-0.2607-0.33190.4582-0.1072-0.07210.2663-0.01590.07411.3607-0.20760.08270.86560.29770.837-46.9518-27.6868138.6665
30.56380.054-0.28390.36970.1020.6641-0.0055-0.07040.10750.130.04460.29310.0388-0.3568-0.08650.3878-0.06790.04740.9998-0.31270.9438-100.82539.731876.5677
40.39690.23880.03790.3932-0.09360.1670.04110.04180.05770.021-0.01760.20180.0522-0.1029-0.03910.5056-0.1567-0.03391.126-0.37410.9654-99.3645-28.959345.6583
50.2764-0.0846-0.17040.37710.05520.4873-0.0154-0.03280.15770.0875-0.02490.269-0.0504-0.25330.04670.63310.32070.03640.878-0.05140.9419-79.688581.039970.8688
60.3744-0.28840.20560.29960.09040.9222-0.0705-0.2028-0.1470.08080.0205-0.02240.3008-0.0395-0.03241.1057-0.30480.03550.6573-0.15830.7491-76.3836-76.769490.5285
70.2648-0.0333-0.1870.4272-0.06530.3834-0.05420.14510.2056-0.2681-0.09550.0051-0.2346-0.11790.14450.84320.2494-0.02970.69810.15950.8808-29.903797.890948.5335
80.5607-0.0962-0.17520.48650.11440.59250.0163-0.26260.17080.2244-0.05620.0357-0.205-0.1619-0.22070.82040.0120.58611.0686-0.38010.8757-97.455447.976135.8714
90.3210.02-0.06820.98170.27090.43140.0753-0.10980.23750.1938-0.0630.0609-0.2107-0.0171-0.0520.67950.09250.16080.5117-0.1530.724-31.366288.826494.3989
100.50350.0485-0.02140.51020.08670.40630.0350.1177-0.0586-0.14010.05280.3691-0.1309-0.1295-0.07460.4950.1709-0.18131.1735-0.13081.1653-96.32141.564748.1235
110.13780.0632-0.09290.9571-0.15991.22870.05490.25780.0272-0.23090.02270.0448-0.1371-0.1904-0.08250.6371-0.2959-0.10171.2534-0.14150.7705-86.3732-32.808713.7698
120.95780.61530.14021.22170.27390.33850.1293-0.2697-0.01290.2518-0.26360.0437-0.0657-0.03820.07630.58530.11240.14710.6439-0.12930.6153-52.132266.955104.4985
131.2291-0.757-0.17660.886-0.39780.6440.09280.02010.1475-0.04110.08630.0207-0.0757-0.0637-0.10061.4716-0.19150.00581.64970.03471.1712-79.2875-25.6815-18.2949
140.418-0.1791-0.36090.38950.19280.5376-0.0472-0.11910.0810.31640.00290.1368-0.1197-0.0896-0.01180.6912-0.16520.21650.7895-0.1890.495-60.388630.0901131.4022
150.094-0.09650.07340.3774-0.04530.05990.0537-0.1351-0.15520.3627-0.0952-0.02450.172-0.0413-0.01441.0251-0.21250.05960.42640.12341.0453-44.7469-39.3581115.6191
160.49220.2272-0.30310.9802-0.09530.9155-0.0880.0083-0.1259-0.24-0.0598-0.0910.1455-0.01240.05910.5537-0.21490.14340.916-0.531.0433-46.7734-69.736721.6352
170.40780.432-0.15480.7678-0.19630.1586-0.09360.01860.00970.14920.0295-0.08670.1424-0.06410.03711.0208-0.51630.20950.8692-0.43840.933-97.7874-76.901673.1083
180.0661-0.02880.04950.48090.69561.14790.08630.1484-0.32430.0070.01580.0990.03290.06920.05060.6294-0.38070.27060.8859-0.34280.8967-111.8393-30.078897.989
190.32330.1084-0.11640.45190.01240.106-0.0191-0.087-0.18190.17670.1404-0.12660.34460.0527-0.02470.7428-0.10580.03980.8386-0.39611.1988-49.1391-89.817449.0354
200.45050.06240.20970.66790.17070.5478-0.20950.1313-0.12420.027-0.008-0.22570.18630.0038-0.02970.957-0.41850.24970.781-0.46351.183-82.5214-94.778951.6417
212.05910.88380.71810.79690.43930.59230.02750.1610.1632-0.19810.00320.39140.0069-0.1403-0.0230.5866-0.3377-0.04181.1709-0.44031.1574-107.2025-55.552842.9266
220.5399-0.21770.18160.3641-0.0550.8634-0.01870.14790.0490.12420.09150.20290.0124-0.241-0.09130.5505-0.10190.41261.1236-0.32651.1046-110.674912.0991101.1151
230.5210.03590.11420.20430.07070.33650.02390.11460.21060.1399-0.10420.1811-0.0157-0.2077-0.06460.43250.01230.3260.9042-0.24050.7831-89.766633.1883101.4289
240.21210.0058-0.0180.43250.24620.1746-0.06070.1260.0434-0.02120.02870.08250.11980.03680.0050.3847-0.01750.08180.6449-0.09240.4592-54.330521.450756.0588
250.563-0.13930.34410.5640.02890.5173-0.07740.19460.054-0.33240.14230.2879-0.113-0.3157-0.07960.81940.3158-0.18361.05610.09420.8838-73.895676.79633.3585
260.2315-0.2511-0.04970.26880.05310.0094-0.0887-0.2531-0.02610.127-0.1235-0.10280.06290.11090.10681.6282-0.21740.05111.0131-0.15421.364-63.6378-101.740881.1498
270.4725-0.03270.02880.13760.17160.2287-0.1082-0.1903-0.31570.14140.00740.24310.3181-0.15480.05310.7932-0.3350.20810.6718-0.05760.9946-61.0964-22.7729109.171
281.049-0.05210.180.87640.00140.19330.0731-0.3420.0710.3714-0.0274-0.1012-0.1385-0.0263-0.06920.813-0.23560.4291.0037-0.07740.7543-80.526617.3877140.8202
290.9252-0.29420.15431.197-0.04511.79850.0532-0.2651-0.03680.33080.0137-0.1552-0.11140.1972-0.01511.3594-0.36380.0671.1509-0.22770.8205-76.0603-56.6698106.9058
300.88950.2159-0.00310.48930.09810.14790.04510.12690.09940.04240.0173-0.05490.0201-0.038-0.02770.4492-0.32850.03680.9972-0.34230.9177-79.5771-47.369736.5232
310.6167-0.63370.05470.6726-0.00860.0652-0.1385-0.0509-0.2733-0.06880.09190.34330.0343-0.26430.02520.60630.00730.01661.073-0.25920.7894-80.337412.815737.3531
320.2170.0329-0.30290.43360.23860.59990.11030.0902-0.0132-0.1814-0.037-0.01640.1017-0.1064-0.00691.14980.06140.1241.6106-0.17170.9405-60.4037-42.6508-7.2484
330.6156-0.1156-0.09540.68030.14370.2712-0.0614-0.15390.11560.17610.07040.21870.1253-0.12120.01970.9065-0.62230.3871.2166-0.42581.1388-132.2246-57.456386.4823
340.1041-0.1072-0.02110.0455-0.0015-0.03850.10120.02110.14840.0232-0.0856-0.1223-0.03830.0206-0.04020.4538-0.1255-0.04130.7848-0.15570.885-54.6369-40.00740.7297
350.1965-0.1301-0.24290.3042-0.00070.55010.0356-0.0805-0.06670.1578-0.05240.07590.022-0.046-0.00720.3965-0.13060.0980.5008-0.0460.3088-3.0089-3.6285124.0402
360.24640.0421-0.02760.2662-0.02260.3260.06420.0920.20470.0398-0.03130.0581-0.2408-0.0362-0.03250.39940.06410.090.29220.13780.491831.974661.063938.5464
370.15240.0478-0.03430.225-0.00530.26260.0003-0.0321-0.06810.0806-0.0727-0.18680.00330.17230.0740.2043-0.0123-0.01980.44150.09990.404392.158-24.502373.3351
380.29520.081-0.07890.6348-0.05660.11490.11130.1698-0.238-0.15350.0449-0.07220.4412-0.13480.00540.8159-0.1259-0.13670.3451-0.26420.789424.1937-92.852230.2855
390.16870.1059-0.16620.4611-0.20.71590.0564-0.012-0.1613-0.0929-0.0569-0.2154-0.12310.07290.02090.2775-0.01190.08840.48420.10540.434105.500412.082312.5034
400.4347-0.0268-0.26770.63050.26370.8171-0.03190.0405-0.003-0.0102-0.0052-0.17950.17580.02670.05220.28280.0290.05260.2533-0.04830.240775.4493-31.18916.9088
410.276-0.3599-0.11260.90630.25280.2455-0.0903-0.1928-0.12880.4120.0070.1856-0.02570.05810.06250.7027-0.14360.10590.77920.1680.366828.3205-39.3705160.8379
420.995-0.2139-0.28720.47870.19230.2902-0.00520.25080.3173-0.22230.08740.0984-0.1104-0.0993-0.06540.41730.084-0.00130.78910.22580.393320.416933.0085-8.8756
430.6528-0.03350.07530.5754-0.17860.4043-0.04050.13130.0021-0.1648-0.09460.18650.0615-0.12670.09640.3483-0.0798-0.08620.646-0.03570.34311.3272-26.962612.3234
440.7282-0.0521-0.01280.44260.06010.40810.05360.0697-0.1528-0.13160.09040.370.2772-0.2717-0.08640.6114-0.2795-0.11160.8212-0.14370.8884-12.5914-78.454829.7723
450.14050.00210.0930.3974-0.02090.5794-0.0165-0.1225-0.11760.1372-0.0929-0.12020.16110.17070.08060.435-0.018-0.05480.58550.23320.409270.8488-54.6738111.439
460.49450.2860.1580.26480.14210.30130.09410.19970.1762-0.0816-0.1408-0.15240.0221-0.05760.02160.347-0.06340.0860.57960.08570.36268.249514.2225-15.6915
470.138-0.0099-0.0036-0.0056-0.0230.22660.0333-0.1984-0.17580.1164-0.0616-0.0720.16620.06590.03950.457-0.178-0.00870.55870.16070.263441.9802-31.8051127.3686
480.1119-0.0111-0.09680.15410.1690.24460.01650.24140.1796-0.028-0.03250.0097-0.0459-0.09040.07170.28110.07280.0110.42710.1610.313255.733530.032712.2229
490.21310.01190.30190.62390.20250.4830.07760.1280.2137-0.0343-0.0005-0.0575-0.02450.1048-0.09020.3566-0.08870.00280.2734-0.00370.345972.891440.457667.6217
500.42010.0187-0.02490.2890.01740.22260.0053-0.0753-0.18510.0388-0.0535-0.08180.10680.05910.0810.28020.03090.04340.28310.11990.439580.4443-49.576165.4872
511.13-0.19510.15590.3985-0.06210.42810.05640.00560.1940.047-0.0211-0.0802-0.16260.001-0.01420.6118-0.07430.03880.4061-0.17840.537236.694261.878111.4702
520.94450.2413-0.71850.218-0.31640.84540.0618-0.05340.05940.0223-0.02680.1701-0.2118-0.0006-0.05430.58120.10840.10340.5657-0.23130.609-15.213752.1399118.2482
530.4902-0.3432-0.05570.44190.15060.3477-0.10520.0204-0.06890.1325-0.10890.12410.018-0.38730.15680.75690.07140.14260.8212-0.22270.6742-48.173258.4461133.0509
540.30530.1338-0.18290.3651-0.03290.2875-0.05380.23980.0018-0.07810.11330.18270.1383-0.1285-0.03810.36790.00380.00860.5722-0.03010.263248.6002-14.1385-4.7714
550.03070.0715-0.15470.1553-0.25540.5948-0.03820.05930.0264-0.164-0.0046-0.01240.1787-0.05310.04560.4098-0.0283-0.03890.3178-0.12540.412245.9201-54.701929.4616
560.57990.02220.50661.5320.15711.4639-0.0291-0.05710.2104-0.0789-0.0371-0.1236-0.4366-0.0228-0.00861.2169-0.0005-0.00290.6216-0.48250.828823.858489.7087118.3342
570.54220.08040.07060.7562-0.06320.13690.06970.18070.2044-0.1491-0.12520.06570.0046-0.02250.08270.32360.14050.04380.46110.00570.4316-7.810245.417748.1021
580.6042-0.33470.28940.2015-0.14140.1647-0.06180.23890.4528-0.02990.04380.0281-0.394-0.21430.03040.64470.1430.13580.48140.08110.9245-5.140781.193456.8166
590.3794-0.11280.13720.09920.08930.29790.0068-0.1515-0.03080.2253-0.0296-0.0720.02190.020.05770.6107-0.1551-0.00770.5795-0.17430.341252.136725.0692143.0233
600.46890.06630.04450.49830.00930.4360.0537-0.1119-0.0220.08940.0658-0.2275-0.11540.2338-0.09610.3856-0.2085-0.1430.69430.01110.3956100.438911.7821113.9039
610.3164-0.1532-0.02160.3195-0.1250.647-0.1125-0.2316-0.03190.162-0.03550.0817-0.00410.0170.02250.9137-0.05790.31630.9837-0.210.3267-7.880227.6923173.371
620.04650.1167-0.07730.5048-0.1990.2340.0035-0.0119-0.1176-0.00810.00730.04920.12470.0584-0.01250.2323-0.0418-0.01370.32430.08940.327466.1021-53.805583.7837
630.01230.06970.05551.3305-0.16910.33780.01440.0424-0.1845-0.1277-0.0113-0.26690.1357-0.0250.00610.3668-0.0238-0.02190.421-0.09840.52655.7617-55.972551.2226
640.5191-0.36050.22950.5807-0.07681.20370.0179-0.0886-0.01360.0771-0.03180.2177-0.0277-0.30090.01730.601-0.04780.35461.081-0.1940.5653-32.560423.632152.2644
651.14960.46370.0131.9520.04341.31350.0181-0.01430.19220.0937-0.075-0.2001-0.26250.2116-0.02270.4278-0.03270.09390.2417-0.04350.519543.800271.946580.7804
661.21930.01030.29190.1044-0.05430.42030.04420.0921-0.0296-0.0601-0.0282-0.1228-0.11610.1853-0.03310.2634-0.04110.01210.3410.07160.35289.3214-0.058357.6753
670.6111-0.0802-0.22760.88910.09231.0017-0.03190.01480.00350.1022-0.0193-0.22-0.02930.06950.02480.2656-0.04240.06230.43680.10930.270281.190314.339622.1692
680.6025-0.0249-0.40480.0657-0.14370.5914-0.122-0.2016-0.06440.0981-0.0125-0.13050.0424-0.02910.04120.6242-0.10950.1640.6507-0.18660.36945.92527.6881144.0353
690.2156-0.0716-0.0270.76140.11460.18180.0099-0.38510.0080.18540.0351-0.15060.03290.0084-0.04470.4721-0.1053-0.10220.8193-0.02870.273272.9454-0.5046141.5295
700.6221-0.4163-0.25880.360.32760.5987-0.073-0.0158-0.29550.104-0.01330.0840.2413-0.1980.10620.6431-0.2829-0.02610.51020.21890.478536.2031-63.2434127.2705
710.3793-0.37460.12350.8032-0.24390.7511-0.1071-0.03770.17210.17-0.0021-0.0360.06680.07350.07970.3786-0.1075-0.01550.4239-0.00160.263453.00352.8994117.6186
720.591-0.0572-0.04061.20220.24221.4305-0.0029-0.03210.09110.13310.00170.0486-0.1505-0.13910.08050.8466-0.0656-0.0010.7037-0.38720.326628.630661.8247154.917
731.28540.00490.09110.2789-0.03550.11280.00790.18470.07740.0845-0.0548-0.0644-0.1527-0.0410.01310.5555-0.1044-0.02590.5113-0.07620.268158.813924.0312111.903
740.4470.21620.37910.8-0.33761.25610.00570.0613-0.0253-0.09930.06260.17080.0312-0.1873-0.08110.23970.0747-0.05190.68440.15090.38867.567217.2862.8294
750.28550.3391-0.48220.4087-0.58270.83250.0192-0.00330.01040.0917-0.09370.1539-0.0710.07150.00380.5233-0.09210.0860.5872-0.00520.5027-35.34555.575482.0492
760.33760.42830.19911.47230.61151.06890.02490.0135-0.09960.0579-0.06050.12390.3016-0.2447-0.00750.4918-0.18970.06390.36660.06190.500520.03-60.629177.079
770.4234-0.0306-0.02010.32910.06590.54080.0606-0.22690.08090.2733-0.04750.1231-0.0866-0.1801-0.06130.4832-0.04420.21890.6149-0.12660.3719-17.817414.1587123.2363
780.60360.0182-0.3018-0.0067-0.01490.505-0.0253-0.0481-0.0941-0.1981-0.1323-0.23580.1880.05490.0690.48930.25870.50660.75220.40111.3844293.5158-1.515217.1276
790.49310.18710.15340.7338-0.04650.3359-0.03590.3426-0.1441-0.3406-0.1112-0.09590.2092-0.02010.13960.62230.20810.24540.7386-0.16760.6529237.6555-25.1252176.5216
800.7817-0.0149-0.15580.5662-0.14090.7875-0.0311-0.06030.14470.1014-0.1005-0.36980.02990.34610.10870.4094-0.0597-0.12590.51770.22641.077276.360417.019246.6062
810.12460.0209-0.08810.3860.0180.39690.4515-0.36890.42980.5365-0.1296-0.183-0.35230.287-0.22461.3588-0.31490.28990.6552-0.04450.8268272.541-22.8148277.9195
820.17180.1483-0.23870.4264-0.06280.37510.04620.05520.16130.0414-0.0164-0.4022-0.11420.2623-0.02410.6447-0.234-0.20310.3380.15241.2594251.878587.5138243.6302
830.63430.34550.08410.2997-0.03141.2599-0.07210.3116-0.0952-0.26990.0909-0.11760.4437-0.2142-0.03321.0364-0.13650.14790.58880.04310.5744254.2532-69.8505230.5562
840.65690.079-0.13520.5261-0.09830.4712-0.07050.00030.2350.3755-0.0571-0.2169-0.2126-0.07050.1130.88230.0275-0.08840.2768-0.0150.833196.5907103.0458255.2045
850.68980.1108-0.02360.5481-0.10191.0811-0.08150.19920.1763-0.1898-0.057-0.0799-0.27710.0791-0.1060.5773-0.16730.25610.98020.45891.1537284.567752.7653186.1061
860.27370.02760.01380.5253-0.14610.34670.07020.17390.1735-0.1732-0.14970.0748-0.246-0.05520.02850.75080.0397-0.02610.41730.21410.7226209.452691.9504210.224
870.5240.09920.0950.69610.01440.65190.0242-0.02980.13310.2678-0.0384-0.3748-0.06250.2074-0.05030.5739-0.1468-0.43970.60670.06331.1647264.753449.9434271.6348
880.0770.07010.15680.15840.01660.445-0.004-0.21760.03110.1746-0.0864-0.25490.08410.20170.03861.618-0.29880.41591.0703-0.43511.3631255.9285-27.1345307.75
890.6627-0.63990.40111.2924-0.31310.3696-0.0240.09280.1073-0.3218-0.0839-0.1612-0.19470.05560.01960.5935-0.05330.11190.440.2210.7026232.404171.279206.7994
900.2997-0.0899-0.07790.02450.02450.02030.0291-0.0432-0.02420.0651-0.0363-0.2343-0.00380.0317-0.02512.508-0.17450.51152.0721-0.35361.9272245.0869-19.7343339.3102
910.2003-0.0662-0.13510.4661-0.0480.3966-0.00830.0330.1237-0.2165-0.1003-0.1542-0.07230.31030.00840.57850.01950.2010.8130.19990.5922247.76233.3377183.5286
920.2913-0.00210.09270.95770.33370.40610.06430.1502-0.18650.0872-0.07470.14090.32080.2072-0.02690.65810.17290.09180.5415-0.14630.8007231.187-36.8082198.7725
930.65240.032-0.1030.62820.06420.77250.24150.02680.26840.2639-0.07390.24870.0082-0.3743-0.10860.9730.19830.58830.81250.48991.1808214.173-59.6866293.9444
940.70990.0327-0.46080.89870.30160.7944-0.09860.0458-0.0239-0.0827-0.0122-0.25830.37440.29930.10120.83120.21120.22230.53250.16680.912272.6732-70.6105251.0157
950.04820.1448-0.16730.6406-0.65240.65240.18750.0666-0.0093-0.24-0.2175-0.3155-0.00750.01550.06840.66520.17350.16340.79860.20631.1109292.7088-25.2474229.5222
960.6446-0.04020.06140.8695-0.26170.24190.140.29820.1329-0.15470.15560.28040.258-0.5017-0.06640.8941-0.22910.10890.92250.51760.8502220.3238-80.9189267.3985
970.82090.02070.15520.7867-0.19250.508-0.12-0.0328-0.1668-0.03860.0613-0.14950.32830.08680.03191.07120.11830.11410.42730.22020.7878253.5349-87.3416269.9959
980.33630.27610.08230.42870.05360.82970.216-0.39940.2170.545-0.0328-0.2014-0.33480.2723-0.16170.9207-0.1691-0.21950.73220.17650.9083279.1702-49.9493282.7055
990.54420.14730.07810.21620.21621.3484-0.16060.01140.0605-0.0419-0.143-0.23290.10250.26740.11410.3510.01550.11780.81970.33831.1752291.053818.8774224.4367
1000.5252-0.02510.1330.4316-0.08670.42470.0066-0.01730.2352-0.0424-0.153-0.3392-0.07530.17940.10740.3383-0.07680.11530.59060.17890.8957269.961538.8052218.8151
1010.30970.10550.01460.5209-0.18990.1759-0.02320.0210.04940.2497-0.0574-0.1896-0.1233-0.00870.09660.4341-0.0388-0.05920.29810.07220.5312226.248827.4657256.3579
1020.85810.10230.44550.32670.00650.43470.0449-0.29990.0750.3205-0.1115-0.3431-0.20690.0010.04351.0584-0.148-0.43410.4191-0.13070.9339238.54284.8909279.2781
1032.02371.03870.23711.10240.03151.58270.05780.1615-0.2209-0.14040.00950.06640.1121-0.1437-0.01281.6524-0.3520.17740.6660.09740.8344239.0946-94.0173238.2182
1040.29840.23910.21420.22180.22920.61110.01510.1884-0.2154-0.05180.0951-0.16820.15230.2822-0.04330.39240.13450.10520.51440.02250.839245.4341-18.4902208.0962
1051.03070.055-0.10490.87250.0290.17470.06920.3340.0771-0.36720.0051-0.1072-0.12330.13210.03890.5043-0.05740.40410.8320.1370.8148269.6221.1227179.0569
1061.4936-0.03110.05092.03740.18942.07650.05990.428-0.0916-0.3898-0.02960.0981-0.0622-0.0672-0.00381.2531-0.13530.3540.89430.26360.764257.3168-50.0718214.0357
1070.5136-0.28840.16930.92820.29220.24930.0563-0.32720.03780.3868-0.10290.2627-0.030.00370.02781.31260.1190.36980.61470.00830.8206250.4371-40.0187284.1052
1081.42611.19250.32791.08170.43470.4575-0.131-0.0546-0.250.27860.0466-0.39190.06560.24820.06320.7476-0.0252-0.18740.56060.19270.7084248.259820.6429280.6274
1090.1851-0.07420.22130.3059-0.38861.45350.0132-0.04830.01920.039-0.0381-0.12320.0870.19760.04371.8364-0.08690.27531.7256-0.451.5368226.5859-34.5396322.1661
1100.73470.0531-0.21810.4754-0.02410.46920.0137-0.1559-0.0746-0.0801-0.0522-0.4320.26030.5523-0.05690.6410.40930.19711.31670.27391.5965309.128-53.0413242.1147
1110.18790.09350.00120.02040.0464-0.04090.1398-0.1793-0.0459-0.1022-0.0065-0.0605-0.1484-0.0118-0.14960.7145-0.17570.10660.70310.09310.947216.5809-39.3952280.6099
1120.43710.0304-0.42990.30060.15610.53180.02690.31660.0152-0.05730.0515-0.13770.1696-0.0274-0.09010.41490.05320.04760.5385-0.12020.3487191.7256-6.6173183.5544
1130.1696-0.06270.08390.44580.00760.33320.0226-0.00470.16680.08270.02860.0272-0.1883-0.0162-0.02070.3480.03410.03830.02620.10620.517136.624666.1448249.8165
1140.181-0.06180.12290.1457-0.02630.25880.08530.1027-0.0941-0.09810.04550.1320.1189-0.1556-0.04740.4219-0.1409-0.160.40410.01330.366587.8703-25.9323213.8139
1150.3825-0.08220.0370.8092-0.33570.12780.0452-0.1138-0.22230.13240.15120.23950.1668-0.1332-0.05120.6638-0.0201-0.22120.1480.15420.6181144.4071-84.8247280.3855
1160.3598-0.1885-0.1350.60190.29640.51780.1556-0.0181-0.08170.0498-0.09710.13380.0322-0.2828-0.03870.30050.03980.04720.47320.15220.388360.172516.9699264.8951
1170.57890.0005-0.19280.6077-0.10040.5548-0.03150.0214-0.15910.10780.10380.2130.1306-0.1389-0.01650.3685-0.104-0.00470.18220.15010.341691.293-24.9691272.9643
1180.15520.05340.00530.5898-0.0610.3785-0.02740.2687-0.167-0.1446-0.0223-0.13090.2410.1730.01620.9260.13840.06840.935-0.41780.4442170.0915-48.1702145.7377
1191.40880.3374-0.3620.43580.02460.2512-0.0307-0.20410.09770.10740.0362-0.1133-0.0443-0.055-0.03560.46230.02630.00040.2386-0.06060.2419137.89244.3121302.0075
1200.3376-0.0969-0.10360.54230.20140.1492-0.1734-0.19920.03470.4994-0.0598-0.2588-0.19920.0262-0.38521.02130.2227-0.52340.22390.0370.4606153.4799-16.4594290.459
1211.02290.0624-0.05990.3796-0.05090.4977-0.09230.0807-0.07850.07040.0377-0.25160.03490.14680.0840.56420.0643-0.14150.27350.00590.5984180.3866-69.3067286.9038
1221.01420.6190.13042.4947-0.20530.56-0.0018-0.0981-0.24290.1096-0.1224-0.0870.13170.15080.04661.0049-0.2231-0.23210.44670.1751.0485172.761221.6509346.1933
1230.14910.0723-0.04010.44070.06450.51480.04580.1736-0.1422-0.19630.0629-0.04480.2728-0.0155-0.04330.6705-0.0569-0.22050.5382-0.23740.4511117.9902-59.5219185.7694
1240.5868-0.33490.26830.3048-0.23350.63810.022-0.08610.12990.01760.14290.11390.0047-0.0835-0.11170.36490.05590.11870.30330.06620.348290.125824.5854300.3385
1250.0321-0.03480.03290.0169-0.04870.07560.01850.1787-0.2501-0.1880.0402-0.08860.13730.0138-0.05560.69360.02520.00160.6004-0.28320.3839149.2895-37.2953173.9758
1260.33260.0490.03790.1139-0.06870.2048-0.0203-0.09180.09990.09450.0526-0.0263-0.02670.0424-0.04620.28470.02180.04050.12160.00390.2631108.292537.4463273.9752
1270.73380.10330.41760.3741-0.11960.54240.08740.1170.1328-0.0677-0.02810.06260.0877-0.2114-0.10960.34870.0511-0.02310.32380.15050.3537109.710241.111210.7698
1280.23680.0013-0.05070.192-0.03020.18460.06160.0374-0.054-0.09230.0091-0.01220.0479-0.0737-0.0660.469-0.1332-0.12930.3151-0.05760.47997.8388-49.2731227.2693
1290.44470.16060.14880.48440.10760.4929-0.00170.14390.1161-0.109-0.00740.0041-0.10670.10450.0450.6167-0.0645-0.02340.58080.25240.3058148.685657.8356178.2173
1300.979-0.1154-0.41760.25690.03860.580.01830.11770.0625-0.0395-0.0398-0.1409-0.03740.0769-0.00910.4809-0.10030.07670.49840.1880.4808200.69650.1815184.5366
1311.2150.47940.28020.18160.10810.0609-0.16010.24370.1375-0.08290.0297-0.2223-0.09120.24050.12270.6885-0.09780.13281.01790.2130.6116235.811360.507177.7348
1320.2759-0.0465-0.05920.4476-0.0680.29470.0267-0.147-0.04380.0764-0.0204-0.09080.0296-0.0432-0.01770.4142-0.0097-0.01660.27590.03580.2327112.1437-4.0165297.858
1330.1052-0.1675-0.2120.19050.29380.36060.0339-0.0317-0.12360.1219-0.01450.10140.07820.02990.00630.5353-0.024-0.07710.20840.08160.3894123.3717-48.0769270.6881
1340.3683-0.40710.01030.9243-0.45891.5986-0.02330.11140.0949-0.04880.03870.0594-0.2248-0.1381-0.15281.0014-0.147-0.04940.7290.46680.4934161.562785.3879171.1181
1350.5066-0.01620.23090.59290.04890.20180.124-0.21910.19760.0577-0.0731-0.2651-0.02130.0776-0.02260.3777-0.0485-0.01660.20220.0730.4352177.763351.3735251.6864
1360.27310.52510.24980.86660.43920.1667-0.11370.02680.17790.10760.12060.1178-0.20110.07480.01890.765-0.0747-0.02790.35990.06740.7026190.7939100.2665248.1773
1370.20160.0550.03410.0172-0.01480.36-0.00320.2867-0.0764-0.2112-0.00870.0253-0.1219-0.0425-0.04990.6494-0.1143-0.14610.89170.19530.2089141.645416.9402149.2112
1380.4565-0.49320.0260.5544-0.08010.40060.15890.34720.0273-0.09660.05790.0891-0.08240.00580.0850.5932-0.1242-0.31480.77250.14050.331688.54684.6082168.1151
1390.15660.0135-0.13910.22380.06450.61450.02030.157-0.0232-0.17370.0251-0.0312-0.0327-0.0051-0.00890.8189-0.12240.29411.40280.02190.3528207.251618.4632132.9781
1400.1805-0.08950.02480.3492-0.00030.06290.03760.0745-0.0522-0.05190.04940.07050.1617-0.0339-0.08370.5364-0.097-0.11540.3735-0.11430.3985116.0419-55.0046213.4016
1410.02210.1001-0.02772.2423-0.14150.20690.03210.0347-0.0962-0.0709-0.00020.22650.1315-0.05130.00080.5116-0.063-0.17990.33110.01030.4365118.5335-52.5492247.6234
1420.51640.0002-0.510.65490.42161.2620.0563-0.09120.001-0.0313-0.0093-0.20920.0180.31880.03750.4271-0.08980.27981.04490.04860.5006226.810318.5519159.891
1431.5066-0.6888-0.06111.9277-0.23051.3882-0.05250.16910.1071-0.1403-0.01360.2023-0.06-0.22360.05280.444-0.04090.01790.36780.18920.4564134.447671.4268205.0154
1440.99560.10060.50210.20750.18860.64740.07440.0236-0.02730.0310.06830.2083-0.1272-0.2532-0.13790.2751-0.046-0.08210.39430.07430.358486.54870.3365226.4659
1450.9951-0.0883-0.38231.01220.05211.0871-0.02120.12570.1250.00940.03530.0341-0.0762-0.1848-0.04210.22390.00640.0370.2190.0890.357686.034419.4133260.7736
1460.36050.0849-0.20770.0432-0.00850.1694-0.21230.3287-0.1258-0.09570.08960.05230.0650.1830.03360.5842-0.04750.1340.92840.04970.3112186.987921.5156158.2227
1470.27840.08160.06040.7219-0.15790.10730.01250.3765-0.0224-0.29170.10810.0250.1611-0.0742-0.08550.6911-0.0918-0.13270.9114-0.02650.2726121.9194-9.5403149.089
1480.63550.4298-0.16140.3158-0.13810.40850.0244-0.0351-0.2191-0.09740.0255-0.10110.25460.25160.0120.79040.1386-0.01730.502-0.27520.533155.5903-68.1219179.4881
1490.38050.4360.22380.86490.53190.9454-0.06930.280.126-0.1283-0.03360.00950.0733-0.15670.10570.5413-0.0374-0.01890.56380.00350.2355135.6177-2.2705176.2702
1500.61840.1154-0.38531.6813-0.27391.03950.0695-0.01220.1297-0.1844-0.0833-0.1499-0.06950.14820.05190.8924-0.07220.07710.97070.37740.3895166.318252.7984138.2239
1510.8345-0.17010.19030.4449-0.00430.54190.0713-0.14360.1071-0.09950.08690.17330.00240.0452-0.10670.5006-0.062-0.08730.64560.14620.3879128.135219.1211177.7248
1520.60640.13450.2591.31920.69691.3872-0.1348-0.10190.00130.15440.0616-0.09150.03520.060.10230.4056-0.0297-0.09270.2116-0.05260.3057153.335728.1484295.3657
1530.6194-0.6345-0.64110.64620.65430.659-0.01640.2265-0.0075-0.2097-0.154-0.0085-0.1221-0.15430.09380.3179-0.0994-0.00520.3413-0.03630.4984213.55599.609228.3839
1540.2687-0.3423-0.021.1723-0.68590.8449-0.07030.09410.0376-0.0575-0.0586-0.34210.22520.02510.10090.60360.0824-0.0630.2607-0.13660.4581159.181-58.8704231.3778
1550.4325-0.1833-0.31880.15510.25090.72850.11250.18320.1048-0.19680.0348-0.2285-0.12840.0983-0.07240.3922-0.02260.12890.63320.02560.3653205.479412.0434185.364
1561.21250.1471-0.26030.6331-0.26330.9036-0.0498-0.30270.30290.2911-0.05430.03660.028-0.08910.11681.3031-0.2133-0.0160.7286-0.0590.6442133.822115.1824349.1796
1570.40770.03820.15660.74470.04050.0614-0.0430.03560.14880.0115-0.0207-0.1974-0.1090.22440.03161.8454-0.12540.26021.8999-0.02531.7457116.995415.4973368.3437
1580.0003-0.00120.00010.0035-0.00110.00090.00140.10980.0545-0.06460.00330.256-0.093-0.2912-0.00832.48740.01650.16452.42020.0042.3352102.236312.7023377.047
1590.21550.009-0.05050.1261-0.02460.18090.0423-0.03320.02750.0443-0.0423-0.0072-0.0248-0.0154-0.00930.248-0.0607-0.00590.2786-0.00670.273439.21452.136575.6664
1600.66890.1068-0.25810.0133-0.03810.0976-0.0033-0.1339-0.33860.10790.17980.73960.2105-0.6449-0.07810.9025-0.3859-0.10621.54060.02151.3776-17.1254-48.646514.9116
1610.14860.06450.02660.02530.01150.0021-0.18030.0197-0.0922-0.04560.02090.87570.0997-0.48090.0951.35190.1086-0.14591.8115-0.09151.3877-2.3595-0.1363-24.9655
1620.3214-0.3129-0.47110.59050.39560.7011-0.1224-0.70810.45690.5187-0.178-0.1162-0.5415-0.07190.25111.1455-0.06380.0131.0823-0.16510.765628.06350.9879155.7337
1630.83740.4737-0.57680.96480.12090.70190.18080.0862-0.0307-0.1019-0.03230.08490.1754-0.0117-0.09680.669-0.02160.08540.785-0.25370.7058-29.7111-15.591861.5271
1640.133-0.02210.3590.0041-0.05511.0202-0.0165-0.1786-0.6295-0.0410.13610.69150.7833-0.7078-0.08522.1081-0.1849-0.04662.1693-0.24952.0157-21.7405-27.3709163.3726
1651.0624-0.6746-0.69321.4331-0.58251.54680.1149-0.42020.38180.48340.0546-0.6662-0.3260.4254-0.08811.4188-0.0658-0.00211.4403-0.02931.054411.7862-2.2325182.1016
1660.00020.03050.03790.47820.61210.7768-0.0074-0.50660.60080.51630.2341-0.0375-0.5596-0.0392-0.14781.06120.11830.10730.7945-0.33251.0654-4.783588.8131100.6392
1670.21890.21310.19030.61620.00830.17520.02840.2205-0.2061-0.35930.01050.01320.2251-0.0142-0.02840.5912-0.1193-0.04430.5465-0.23160.541523.7042-66.636216.8149
1680.23110.0349-0.05950.1967-0.08570.42210.0876-0.29260.06840.2087-0.0403-0.0704-0.10450.1539-00.4744-0.1396-0.05290.6346-0.05120.31163.12197.8045126.2371
1690.25280.0379-0.05350.4374-0.04450.22070.01420.10810.1386-0.1146-0.04980.2343-0.1737-0.25570.02570.50940.2132-0.00020.7291-0.06630.6212-54.236463.328362.642
1701.40070.9896-0.95663.81121.76172.6315-0.17880.41290.472-0.5574-0.09730.6-0.5777-0.51730.1721.01060.3794-0.21471.08760.1460.9573-49.4023101.943134.3288
1712.0348-0.0810.71973.94620.59270.35160.0479-0.29260.19630.3174-0.0220.2584-0.2198-0.24890.00661.50980.3874-0.03891.4765-0.17851.7599-42.7406127.7074104.0743
1720.71220.2247-0.09640.0729-0.03350.01480.04650.16520.56750.00590.0670.1127-0.5566-0.1708-0.04861.68880.03520.19261.6985-0.23321.8341-59.3479113.3894117.9709
1730.14260.34710.04740.8360.11660.0195-0.1514-0.3595-0.4750.3527-0.12940.47170.4342-0.29610.15822.361-0.1123-0.15932.3328-0.12932.2081-112.380614.768227.4793
1740.4007-0.00020.01720.4101-0.2860.19740.03710.2848-0.0036-0.31180.07560.15120.0257-0.3762-0.13290.78230.2375-0.20491.38990.00410.8678-83.654948.686424.5019
1750.49370.0677-0.06150.64130.01130.33970.103-0.1256-0.09070.3246-0.16960.190.0778-0.25930.0570.4836-0.15430.15010.6776-0.17160.5395-60.515410.5082106.0018
1760.47050.3704-0.13150.67150.51671.03960.0810.28330.2422-0.29910.2290.436-0.411-0.6567-0.19021.26610.33130.04181.7846-0.43031.8718-109.110558.074896.5527
1770.0037-0.00740.00970.0096-0.01610.016-0.1718-0.0024-0.0173-0.1845-0.05330.61680.0421-0.4650.1592.1450.0860.09782.2708-0.16492.0213-99.914979.5013108.7981
1780.134-0.088-0.3230.556-0.28171.23240.0270.01880.16680.14110.04590.1999-0.34840.1852-0.00250.59140.23270.19661.0045-0.19671.016-80.079856.447878.5594
1790.13040.5868-0.18362.453-0.78990.24670.19840.09440.20810.0751-0.11420.1754-0.4049-0.1016-0.06081.2357-0.06580.3891.226-0.4271.317-63.813378.6979126.776
1800.10750.1378-0.01270.32990.26750.24310.00920.1962-0.12540.1565-0.07860.05230.1386-0.28570.00750.5198-0.31710.06780.9715-0.39580.8963-74.4564-47.584856.1464
1810.26730.2659-0.01350.58490.06880.21810.07060.1014-0.07040.0158-0.0920.0173-0.0379-0.15050.05760.35550.0720.05240.5606-0.10750.519-35.706924.635274.3344
1820.21180.01730.00490.1416-0.02220.14840.01220.1454-0.0011-0.05920.02720.01560.0364-0.0153-0.0380.33860.0001-0.04560.25990.0250.2476139.10012.8578220.1629
1831.8867-0.0801-0.13270.00150.00580.01330.0244-0.1652-0.45860.23190.194-1.04960.21061.0611-0.12361.18240.2917-0.25761.2920.04381.4308182.2887-36.8244297.9504
1840.23120.12010.40460.730.11960.68530.16640.24720.02920.1081-0.3087-0.30050.12220.08620.21331.1102-0.17940.00780.65640.11420.5995153.929621.5133329.0757
1850.54890.0919-0.23080.2367-0.01060.0989-0.17020.82990.4293-0.69120.08190.0319-0.46820.47970.10351.349-0.09980.07881.42590.07810.8145169.2371-7.6292145.2631
1861.0112-0.4065-0.85351.70350.01020.81390.1517-0.13170.00230.1883-0.0215-0.08840.2569-0.0722-0.05590.6919-0.07650.08330.60670.06890.6349204.6533-10.9566248.3189
1870.0037-0.00730.00480.0104-0.00990.007-0.0237-0.1024-0.74420.0270.0595-0.35360.7470.4911-0.01392.15470.1995-0.06112.0838-0.02732.0845219.822-35.4698150.9354
1881.48630.5033-0.16320.77180.70790.98580.0360.58460.3684-0.66280.03940.5795-0.232-0.362-0.06141.565-0.00460.02031.4266-0.33380.9677191.2009-13.6541123.9551
1890.0630.005-0.04340.009-0.01440.0333-0.0410.31730.3252-0.36960.1215-0.0888-0.43720.146-0.05640.9826-0.13540.20420.77870.54881.1347186.370288.0875195.7016
1900.1862-0.16720.18120.2148-0.1760.0859-0.0872-0.1381-0.15360.40680.17180.09390.0346-0.1056-0.09290.6470.0727-0.06610.28990.08810.418142.1109-56.9009289.859
1910.20260.0068-0.02290.12320.01880.3230.00780.32980.0274-0.23250.08510.03960.0287-0.0293-0.03690.6211-0.0832-0.09090.73960.03070.2943127.68930.9763165.1021
1920.3302-0.1140.01180.6339-0.00560.2039-0.0328-0.00470.24080.1665-0.065-0.3159-0.1650.07650.0860.5356-0.1061-0.11070.33450.08520.6857226.180668.6992247.6363
1931.5852-0.8734-1.23522.5752-0.85482.08780.0235-0.48150.46780.5044-0.1539-0.4465-0.29910.55030.02061.2085-0.1511-0.3480.4856-0.18460.8891213.8543108.9433272.1104
1940.64160.46270.11161.8461-0.30910.11890.14410.31830.399-0.26670.0329-0.2463-0.43650.2465-0.13221.8245-0.1577-0.16631.18650.25341.6832221.194131.3258201.3147
1950.01650.02750.01690.04660.0350.0298-0.0349-0.08160.4054-0.1304-0.0283-0.1081-0.41930.03460.01482.45190.1260.08462.51330.10912.532241.2064117.8483191.1054
1960.6081-1.04260.23251.9986-0.13060.3939-0.14050.2546-0.3028-0.3341-0.2071-0.49880.45270.52530.18891.95550.1409-0.56531.7476-0.11261.675277.374425.2172296.6117
1970.3082-0.22960.11060.42380.10820.1725-0.0768-0.24110.15740.161-0.01910.0143-0.11560.16540.04371.0365-0.1183-0.43640.8075-0.03650.957247.147257.6117291.6611
1980.39780.00510.09130.59570.16830.21510.05160.2084-0.0197-0.1265-0.1338-0.3087-0.00460.13120.05440.34990.02820.14410.49790.1460.6321243.144114.7218209.4221
1990.3642-0.07880.64830.23-0.38851.5073-0.0268-0.55360.10310.4590.1435-0.3455-0.23570.63980.00081.65-0.33410.01211.98160.28512.0572290.235959.252235.5464
2000.5070.20270.01770.8047-0.07370.00820.06780.3690.1258-0.31410.0615-0.1189-0.11190.1319-0.04472.1944-0.2321-0.00611.9620.07791.9515271.845689.3584186.5157
2010.4172-0.0736-0.55740.52990.25240.86510.11160.0420.10990.0225-0.1089-0.1354-0.3213-0.1728-0.00210.466-0.1656-0.05870.53510.27961.0734254.925462.6943238.0156
2021.0094-0.709-0.25850.7660.12340.55750.0331-0.03040.21460.05880.0255-0.1694-0.2844-0.14940.04821.2195-0.0930.17541.19570.49211.1282248.744383.187187.0939
203-0.2289-0.05650.1920.9904-0.34950.3128-0.0548-0.0354-0.03420.40710.17950.07820.0587-0.03870.00230.68020.1590.23910.52190.29490.8119248.1015-40.4454263.7378
2040.41720.0518-0.08390.32840.01590.35370.03860.02790.0990.0218-0.10050.0747-0.18110.00380.08660.375-0.0729-0.04730.36580.06720.4222207.995347.8936234.5147
Refinement TLS group
IDRefine-IDRefine TLS-IDSelection detailsAuth seq-IDAuth asym-ID
1X-RAY DIFFRACTION1segid S0A0
2X-RAY DIFFRACTION2segid S1A0
3X-RAY DIFFRACTION3segid S2A0
4X-RAY DIFFRACTION4segid S3A0
5X-RAY DIFFRACTION5segid S4A0
6X-RAY DIFFRACTION6segid S5A0
7X-RAY DIFFRACTION7segid S6A0
8X-RAY DIFFRACTION8segid S7A0
9X-RAY DIFFRACTION9segid S8A0
10X-RAY DIFFRACTION10segid S9A0
11X-RAY DIFFRACTION11segid S10A1 - 960
12X-RAY DIFFRACTION12segid S11A2 - 1561
13X-RAY DIFFRACTION13segid S12A20 - 1432
14X-RAY DIFFRACTION14segid S13A2 - 1513
15X-RAY DIFFRACTION15segid S14A11 - 1374
16X-RAY DIFFRACTION16segid S15A8 - 1315
17X-RAY DIFFRACTION17segid S16A3 - 1436
18X-RAY DIFFRACTION18segid S17A2 - 1267
19X-RAY DIFFRACTION19segid S18A2 - 1468
20X-RAY DIFFRACTION20segid S19A2 - 1449
21X-RAY DIFFRACTION21segid S20A15 - 1210
22X-RAY DIFFRACTION22segid S21A1 - 871
23X-RAY DIFFRACTION23segid S22A2 - 1302
24X-RAY DIFFRACTION24segid S23A2 - 1453
25X-RAY DIFFRACTION25segid S24A2 - 1354
26X-RAY DIFFRACTION26segid S25A36 - 1055
27X-RAY DIFFRACTION27segid S26A2 - 5006
28X-RAY DIFFRACTION28segid S27A2 - 1017
29X-RAY DIFFRACTION29segid S28A5 - 678
30X-RAY DIFFRACTION30segid S29A4 - 999
31X-RAY DIFFRACTION31segid S30A2 - 610
32X-RAY DIFFRACTION32segid S31A82 - 5011
33X-RAY DIFFRACTION33segid SRKA2 - 319R
34X-RAY DIFFRACTION34segid STMA9 - 176M
35X-RAY DIFFRACTION35segid L2A0
36X-RAY DIFFRACTION36segid L3A0
37X-RAY DIFFRACTION37segid L4A0
38X-RAY DIFFRACTION38segid L5A0
39X-RAY DIFFRACTION39segid L6A0
40X-RAY DIFFRACTION40segid L7A0
41X-RAY DIFFRACTION41segid L8A0
42X-RAY DIFFRACTION42segid L9A0
43X-RAY DIFFRACTION43segid L10A2 - 2210
44X-RAY DIFFRACTION44segid L11A6 - 1741
45X-RAY DIFFRACTION45segid L13A2 - 1943
46X-RAY DIFFRACTION46segid L14A3 - 1384
47X-RAY DIFFRACTION47segid L15A2 - 2045
48X-RAY DIFFRACTION48segid L16A3 - 1996
49X-RAY DIFFRACTION49segid L17A2 - 1847
50X-RAY DIFFRACTION50segid L18A2 - 1868
51X-RAY DIFFRACTION51segid L19A and resid 2:732 - 739
52X-RAY DIFFRACTION52segid L19A and resid 74:12674 - 1269
53X-RAY DIFFRACTION53segid L19A and resid 127:183127 - 1839
54X-RAY DIFFRACTION54segid L20A1 - 1720
55X-RAY DIFFRACTION55segid L21A2 - 1601
56X-RAY DIFFRACTION56segid L22A9 - 1082
57X-RAY DIFFRACTION57segid L23A2 - 1373
58X-RAY DIFFRACTION58segid L24A1 - 984
59X-RAY DIFFRACTION59segid L25A22 - 1425
60X-RAY DIFFRACTION60segid L26A2 - 1276
61X-RAY DIFFRACTION61segid L27A2 - 1367
62X-RAY DIFFRACTION62segid L28A2 - 1498
63X-RAY DIFFRACTION63segid L29A2 - 599
64X-RAY DIFFRACTION64segid L30A9 - 1050
65X-RAY DIFFRACTION65segid L31A4 - 1121
66X-RAY DIFFRACTION66segid L32A2 - 1282
67X-RAY DIFFRACTION67segid L33A2 - 1073
68X-RAY DIFFRACTION68segid L34A2 - 1134
69X-RAY DIFFRACTION69segid L35A2 - 1205
70X-RAY DIFFRACTION70segid L36A2 - 1006
71X-RAY DIFFRACTION71segid L37A2 - 1007
72X-RAY DIFFRACTION72segid L38A2 - 788
73X-RAY DIFFRACTION73segid L39A2 - 519
74X-RAY DIFFRACTION74segid L40A77 - 5000
75X-RAY DIFFRACTION75segid L41A1 - 251
76X-RAY DIFFRACTION76segid L42A2 - 5012
77X-RAY DIFFRACTION77segid L43A2 - 5013
78X-RAY DIFFRACTION78segid S0B0
79X-RAY DIFFRACTION79segid S1B0
80X-RAY DIFFRACTION80segid S2B0
81X-RAY DIFFRACTION81segid S3B0
82X-RAY DIFFRACTION82segid S4B0
83X-RAY DIFFRACTION83segid S5B0
84X-RAY DIFFRACTION84segid S6B0
85X-RAY DIFFRACTION85segid S7B0
86X-RAY DIFFRACTION86segid S8B0
87X-RAY DIFFRACTION87segid S9B0
88X-RAY DIFFRACTION88segid S10B1 - 980
89X-RAY DIFFRACTION89segid S11B2 - 1471
90X-RAY DIFFRACTION90segid S12B20 - 1432
91X-RAY DIFFRACTION91segid S13B2 - 1513
92X-RAY DIFFRACTION92segid S14B10 - 1374
93X-RAY DIFFRACTION93segid S15B4 - 1385
94X-RAY DIFFRACTION94segid S16B2 - 1436
95X-RAY DIFFRACTION95segid S17B2 - 1227
96X-RAY DIFFRACTION96segid S18B2 - 1468
97X-RAY DIFFRACTION97segid S19B2 - 1449
98X-RAY DIFFRACTION98segid S20B12 - 1210
99X-RAY DIFFRACTION99segid S21B1 - 871
100X-RAY DIFFRACTION100segid S22B2 - 1302
101X-RAY DIFFRACTION101segid S23B2 - 1453
102X-RAY DIFFRACTION102segid S24B2 - 1354
103X-RAY DIFFRACTION103segid S25B37 - 1055
104X-RAY DIFFRACTION104segid S26B2 - 5006
105X-RAY DIFFRACTION105segid S27B2 - 17
106X-RAY DIFFRACTION106segid S28B5 - 678
107X-RAY DIFFRACTION107segid S29B4 - 999
108X-RAY DIFFRACTION108segid S30B2 - 630
109X-RAY DIFFRACTION109segid S31B77 - 5011
110X-RAY DIFFRACTION110segid SRKB2 - 319R
111X-RAY DIFFRACTION111segid STMB23 - 174M
112X-RAY DIFFRACTION112segid L2B0
113X-RAY DIFFRACTION113segid L3B0
114X-RAY DIFFRACTION114segid L4B0
115X-RAY DIFFRACTION115segid L5B0
116X-RAY DIFFRACTION116segid L6B0
117X-RAY DIFFRACTION117segid L7B0
118X-RAY DIFFRACTION118segid L8B0
119X-RAY DIFFRACTION119segid L9B0
120X-RAY DIFFRACTION120segid L10B2 - 2210
121X-RAY DIFFRACTION121segid L11B6 - 1741
122X-RAY DIFFRACTION122segid L12B9 - 1632
123X-RAY DIFFRACTION123segid L13B2 - 1953
124X-RAY DIFFRACTION124segid L14B2 - 1384
125X-RAY DIFFRACTION125segid L15B2 - 2045
126X-RAY DIFFRACTION126segid L16B3 - 1996
127X-RAY DIFFRACTION127segid L17B2 - 1567
128X-RAY DIFFRACTION128segid L18B2 - 1868
129X-RAY DIFFRACTION129segid L19B and resid 2:732 - 739
130X-RAY DIFFRACTION130segid L19B and resid 74:12674 - 1269
131X-RAY DIFFRACTION131segid L19B and resid 127:183127 - 1839
132X-RAY DIFFRACTION132segid L20B1 - 1720
133X-RAY DIFFRACTION133segid L21B2 - 1601
134X-RAY DIFFRACTION134segid L22B11 - 1082
135X-RAY DIFFRACTION135segid L23B2 - 1373
136X-RAY DIFFRACTION136segid L24B1 - 1354
137X-RAY DIFFRACTION137segid L25B23 - 1425
138X-RAY DIFFRACTION138segid L26B2 - 1276
139X-RAY DIFFRACTION139segid L27B2 - 1367
140X-RAY DIFFRACTION140segid L28B2 - 1498
141X-RAY DIFFRACTION141segid L29B2 - 599
142X-RAY DIFFRACTION142segid L30B6 - 1050
143X-RAY DIFFRACTION143segid L31B4 - 1121
144X-RAY DIFFRACTION144segid L32B2 - 1282
145X-RAY DIFFRACTION145segid L33B2 - 1073
146X-RAY DIFFRACTION146segid L34B2 - 1134
147X-RAY DIFFRACTION147segid L35B2 - 1205
148X-RAY DIFFRACTION148segid L36B2 - 1006
149X-RAY DIFFRACTION149segid L37B2 - 5017
150X-RAY DIFFRACTION150segid L38B2 - 788
151X-RAY DIFFRACTION151segid L39B2 - 519
152X-RAY DIFFRACTION152segid L40B77 - 5000
153X-RAY DIFFRACTION153segid L41B1 - 251
154X-RAY DIFFRACTION154segid L42B2 - 5012
155X-RAY DIFFRACTION155segid L43B2 - 5013
156X-RAY DIFFRACTION156segid LP0B3 - 2210
157X-RAY DIFFRACTION157segid LP1B1 - 471
158X-RAY DIFFRACTION158segid LP2B1 - 462
159X-RAY DIFFRACTION159(segid 25SA and (not resid 1011:1039) and (not resid 1219:1288) and (not resid 1552:1583) and (not resid 2250:2266) and (not resid 2455:2502) and (not resid 2532:2547) and (not resid 2563:2578) and (not resid 3341:3364))0
160X-RAY DIFFRACTION160(segid 25SA and resid 1011:1039)1011 - 10391
161X-RAY DIFFRACTION161(segid 25SA and resid 1219:1288)1219 - 12881
162X-RAY DIFFRACTION162(segid 25SA and resid 1552:1583)1552 - 15831
163X-RAY DIFFRACTION163(segid 25SA and resid 2250:2266)2250 - 22661
164X-RAY DIFFRACTION164(segid 25SA and resid 2532:2547)2532 - 25471
165X-RAY DIFFRACTION165(segid 25SA and resid 2563:2578)2563 - 25781
166X-RAY DIFFRACTION166(segid 25SA and resid 3341:3364)3341 - 33641
167X-RAY DIFFRACTION167segid 5SA0
168X-RAY DIFFRACTION168segid 58SA1 - 1584
169X-RAY DIFFRACTION169((segid 18SA and resid 1:602) and (not resid 64:86) and (not resid 185:200) and (not resid 219:237) and (not resid 480:509) and (not resid 510:545))0
170X-RAY DIFFRACTION170(segid 18SA and resid 64:86)64 - 862
171X-RAY DIFFRACTION171(segid 18SA and resid 185:200)185 - 2002
172X-RAY DIFFRACTION172(segid 18SA and resid 219:237)219 - 2372
173X-RAY DIFFRACTION173(segid 18SA and resid 480:509)480 - 5092
174X-RAY DIFFRACTION174(segid 18SA and resid 510:545)510 - 5452
175X-RAY DIFFRACTION175((segid 18SA and resid 603:1106) and (not resid 640:694) and (not resid 698:742) and (not resid 743:765) and (not resid 810:855))0
176X-RAY DIFFRACTION176(segid 18SA and resid 640:694)640 - 6942
177X-RAY DIFFRACTION177(segid 18SA and resid 698:742)698 - 7422
178X-RAY DIFFRACTION178(segid 18SA and resid 743:765)743 - 7652
179X-RAY DIFFRACTION179(segid 18SA and resid 810:855)810 - 8552
180X-RAY DIFFRACTION180(segid 18SA and resid 1107:1635)1107 - 16352
181X-RAY DIFFRACTION181(segid 18SA and resid 1636:1799)1636 - 17992
182X-RAY DIFFRACTION182(segid 25SB and (not resid 1011:1039) and (not resid 1219:1288) and (not resid 1552:1583) and (not resid 2250:2266) and (not resid 2455:2502) and (not resid 2532:2547) and (not resid 2563:2578) and (not resid 3341:3364))0
183X-RAY DIFFRACTION183(segid 25SB and resid 1011:1039)1011 - 10395
184X-RAY DIFFRACTION184(segid 25SB and resid 1219:1288)1219 - 12885
185X-RAY DIFFRACTION185(segid 25SB and resid 1552:1583)1552 - 15835
186X-RAY DIFFRACTION186(segid 25SB and resid 2250:2266)2250 - 22665
187X-RAY DIFFRACTION187(segid 25SB and resid 2532:2547)2532 - 25475
188X-RAY DIFFRACTION188(segid 25SB and resid 2563:2578)2563 - 25785
189X-RAY DIFFRACTION189(segid 25SB and resid 3341:3364)3341 - 33645
190X-RAY DIFFRACTION190segid 5SB0
191X-RAY DIFFRACTION191segid 58SB1 - 1588
192X-RAY DIFFRACTION192((segid 18SB and resid 1:602) and (not resid 64:86) and (not resid 185:200) and (not resid 219:237) and (not resid 480:509) and (not resid 510:545))0
193X-RAY DIFFRACTION193(segid 18SB and resid 64:86)64 - 866
194X-RAY DIFFRACTION194(segid 18SB and resid 185:200)185 - 2006
195X-RAY DIFFRACTION195(segid 18SB and resid 219:237)219 - 2376
196X-RAY DIFFRACTION196(segid 18SB and resid 480:509)480 - 5096
197X-RAY DIFFRACTION197(segid 18SB and resid 510:545)510 - 5456
198X-RAY DIFFRACTION198((segid 18SB and resid 603:1106) and (not resid 640:694) and (not resid 698:742) and (not resid 743:765) and (not resid 810:855))0
199X-RAY DIFFRACTION199(segid 18SB and resid 640:694)640 - 6946
200X-RAY DIFFRACTION200(segid 18SB and resid 698:742)698 - 7426
201X-RAY DIFFRACTION201(segid 18SB and resid 743:765)743 - 7656
202X-RAY DIFFRACTION202(segid 18SB and resid 810:855)810 - 8556
203X-RAY DIFFRACTION203(segid 18SB and resid 1107:1635)1107 - 16356
204X-RAY DIFFRACTION204(segid 18SB and resid 1636:1799)1636 - 17996

+
About Yorodumi

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jan 31, 2019. EMDB accession codes are about to change! (news from PDBe EMDB page)

EMDB accession codes are about to change! (news from PDBe EMDB page)

  • The allocation of 4 digits for EMDB accession codes will soon come to an end. Whilst these codes will remain in use, new EMDB accession codes will include an additional digit and will expand incrementally as the available range of codes is exhausted. The current 4-digit format prefixed with “EMD-” (i.e. EMD-XXXX) will advance to a 5-digit format (i.e. EMD-XXXXX), and so on. It is currently estimated that the 4-digit codes will be depleted around Spring 2019, at which point the 5-digit format will come into force.
  • The EM Navigator/Yorodumi systems omit the EMD- prefix.

Related info.:Q: What is EMD? / ID/Accession-code notation in Yorodumi/EM Navigator

External links:EMDB Accession Codes are Changing Soon! / Contact to PDBj

+
Jul 12, 2017. Major update of PDB

Major update of PDB

  • wwPDB released updated PDB data conforming to the new PDBx/mmCIF dictionary.
  • This is a major update changing the version number from 4 to 5, and with Remediation, in which all the entries are updated.
  • In this update, many items about electron microscopy experimental information are reorganized (e.g. em_software).
  • Now, EM Navigator and Yorodumi are based on the updated data.

External links:wwPDB Remediation / Enriched Model Files Conforming to OneDep Data Standards Now Available in the PDB FTP Archive

-
Yorodumi

Thousand views of thousand structures

  • Yorodumi is a browser for structure data from EMDB, PDB, SASBDB, etc.
  • This page is also the successor to EM Navigator detail page, and also detail information page/front-end page for Omokage search.
  • The word "yorodu" (or yorozu) is an old Japanese word meaning "ten thousand". "mi" (miru) is to see.

Related info.:EMDB / PDB / SASBDB / Comparison of 3 databanks / Yorodumi Search / Aug 31, 2016. New EM Navigator & Yorodumi / Yorodumi Papers / Jmol/JSmol / Function and homology information / Changes in new EM Navigator and Yorodumi

Read more