登録情報 | データベース: PDB / ID: 4i3s |
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タイトル | Crystal structure of the outer domain of HIV-1 gp120 in complex with VRC-PG04 space group P21 |
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要素 | - Heavy chain of VRC-PG04 Fab
- Light chain of VRC-PG04 Fab
- Outer domain of HIV-1 gp120 (KER2018 OD4.2.2)
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キーワード | Viral Protein/Immune System / Antibody Affinity / Antibody Specificity / Binding Sites / HIV Infections / Antibodies / HIV Envelope Protein gp120 / AIDS Vaccines / Amino Acid Sequence / Antigens / Epitopes / HIV Antibodies / CD4 / Somatic Mutation / Sequence engineering / Complementarity Determining Regions / Immunoglobulin Fab Fragments / Sera / Viral Protein-Immune System complex |
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機能・相同性 | 機能・相同性情報
positive regulation of plasma membrane raft polarization / positive regulation of receptor clustering / positive regulation of establishment of T cell polarity / host cell endosome membrane / clathrin-dependent endocytosis of virus by host cell / viral protein processing / fusion of virus membrane with host plasma membrane / virus-mediated perturbation of host defense response / fusion of virus membrane with host endosome membrane / viral envelope ...positive regulation of plasma membrane raft polarization / positive regulation of receptor clustering / positive regulation of establishment of T cell polarity / host cell endosome membrane / clathrin-dependent endocytosis of virus by host cell / viral protein processing / fusion of virus membrane with host plasma membrane / virus-mediated perturbation of host defense response / fusion of virus membrane with host endosome membrane / viral envelope / virion attachment to host cell / apoptotic process / host cell plasma membrane / structural molecule activity / virion membrane / plasma membrane類似検索 - 分子機能 Envelope glycoprotein Gp160 / Retroviral envelope protein / Retroviral envelope protein GP41-like / Gp120 core superfamily / Envelope glycoprotein GP120 / Human immunodeficiency virus 1, envelope glycoprotein Gp120 / Immunoglobulins / Immunoglobulin-like / Sandwich / Mainly Beta類似検索 - ドメイン・相同性 |
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生物種 | Human Immunodeficiency Virus (ヒト免疫不全ウイルス) Homo sapiens (ヒト) |
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手法 | X線回折 / シンクロトロン / 分子置換 / 解像度: 2.85 Å |
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データ登録者 | Joyce, M.G. / Biertumpfel, C. / Nabel, G.J. / Kwong, P.D. |
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引用 | ジャーナル: J.Virol. / 年: 2013 タイトル: Outer Domain of HIV-1 gp120: Antigenic Optimization, Structural Malleability, and Crystal Structure with Antibody VRC-PG04. 著者: Joyce, M.G. / Kanekiyo, M. / Xu, L. / Biertumpfel, C. / Boyington, J.C. / Moquin, S. / Shi, W. / Wu, X. / Yang, Y. / Yang, Z.Y. / Zhang, B. / Zheng, A. / Zhou, T. / Zhu, J. / Mascola, J.R. / ...著者: Joyce, M.G. / Kanekiyo, M. / Xu, L. / Biertumpfel, C. / Boyington, J.C. / Moquin, S. / Shi, W. / Wu, X. / Yang, Y. / Yang, Z.Y. / Zhang, B. / Zheng, A. / Zhou, T. / Zhu, J. / Mascola, J.R. / Kwong, P.D. / Nabel, G.J. |
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履歴 | 登録 | 2012年11月26日 | 登録サイト: RCSB / 処理サイト: RCSB |
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改定 1.0 | 2013年1月9日 | Provider: repository / タイプ: Initial release |
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改定 1.1 | 2013年1月23日 | Group: Database references |
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改定 1.2 | 2013年2月13日 | Group: Database references |
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改定 1.3 | 2021年5月26日 | Group: Derived calculations / Source and taxonomy カテゴリ: entity_src_gen / struct_conn ...entity_src_gen / struct_conn / struct_conn_type / struct_site Item: _entity_src_gen.gene_src_common_name / _entity_src_gen.host_org_common_name ..._entity_src_gen.gene_src_common_name / _entity_src_gen.host_org_common_name / _entity_src_gen.pdbx_host_org_cell_line / _entity_src_gen.pdbx_host_org_strain / _struct_conn.conn_type_id / _struct_conn.id / _struct_conn.pdbx_dist_value / _struct_conn.pdbx_leaving_atom_flag / _struct_conn.ptnr1_auth_asym_id / _struct_conn.ptnr1_auth_comp_id / _struct_conn.ptnr1_auth_seq_id / _struct_conn.ptnr1_label_asym_id / _struct_conn.ptnr1_label_atom_id / _struct_conn.ptnr1_label_comp_id / _struct_conn.ptnr1_label_seq_id / _struct_conn.ptnr2_auth_asym_id / _struct_conn.ptnr2_auth_comp_id / _struct_conn.ptnr2_auth_seq_id / _struct_conn.ptnr2_label_asym_id / _struct_conn.ptnr2_label_atom_id / _struct_conn.ptnr2_label_comp_id / _struct_conn.ptnr2_label_seq_id / _struct_conn_type.id / _struct_site.pdbx_auth_asym_id / _struct_site.pdbx_auth_comp_id / _struct_site.pdbx_auth_seq_id |
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改定 1.4 | 2023年9月20日 | Group: Data collection / Database references / Refinement description カテゴリ: chem_comp_atom / chem_comp_bond ...chem_comp_atom / chem_comp_bond / database_2 / pdbx_initial_refinement_model Item: _database_2.pdbx_DOI / _database_2.pdbx_database_accession |
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改定 1.5 | 2023年12月27日 | Group: Derived calculations / カテゴリ: struct_conn / struct_conn_type Item: _struct_conn.conn_type_id / _struct_conn.id ..._struct_conn.conn_type_id / _struct_conn.id / _struct_conn.pdbx_dist_value / _struct_conn.pdbx_leaving_atom_flag / _struct_conn.ptnr1_auth_asym_id / _struct_conn.ptnr1_auth_seq_id / _struct_conn.ptnr1_label_asym_id / _struct_conn.ptnr1_label_seq_id / _struct_conn.ptnr2_auth_asym_id / _struct_conn.ptnr2_auth_seq_id / _struct_conn.ptnr2_label_asym_id / _struct_conn.ptnr2_label_seq_id |
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