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- PDB-4hii: Anti-Streptococcus pneumoniae 23F Fab 023.102 with bound rhamnose... -
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Open data
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Basic information
Entry | Database: PDB / ID: 4hii | |||||||||
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Title | Anti-Streptococcus pneumoniae 23F Fab 023.102 with bound rhamnose-galactose | |||||||||
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![]() | IMMUNE SYSTEM / Immunoglobin / Antibody / Streptococcus pneumoniae 23F | |||||||||
Function / homology | Immunoglobulins / Immunoglobulin-like / Sandwich / Mainly Beta![]() | |||||||||
Biological species | ![]() | |||||||||
Method | ![]() ![]() | |||||||||
![]() | Bryson, S. / Risnes, L. / Damgupta, S. / Thomson, C.A. / Schrader, J.W. / Pai, E.F. | |||||||||
![]() | ![]() Title: Structures of Preferred Human IgV Genes-Based Protective Antibodies Identify How Conserved Residues Contact Diverse Antigens and Assign Source of Specificity to CDR3 Loop Variation. Authors: Bryson, S. / Thomson, C.A. / Risnes, L.F. / Dasgupta, S. / Smith, K. / Schrader, J.W. / Pai, E.F. | |||||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 171.1 KB | Display | ![]() |
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PDB format | ![]() | 133.9 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 1 MB | Display | ![]() |
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Full document | ![]() | 1 MB | Display | |
Data in XML | ![]() | 32.1 KB | Display | |
Data in CIF | ![]() | 43.9 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Related structure data | ![]() 4hh9C ![]() 4hhaC ![]() 4hieSC ![]() 4hihC ![]() 4hijC ![]() 4pttC ![]() 4ptuC C: citing same article ( S: Starting model for refinement |
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Similar structure data |
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Links
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Assembly
Deposited unit | ![]()
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1 | ![]()
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2 | ![]()
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Unit cell |
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Components
#1: Antibody | Mass: 23801.338 Da / Num. of mol.: 2 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() ![]() #2: Antibody | Mass: 25116.055 Da / Num. of mol.: 2 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() ![]() #3: Polysaccharide | Source method: isolated from a genetically manipulated source #4: Water | ChemComp-HOH / | |
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-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 2.73 Å3/Da / Density % sol: 54.91 % |
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Crystal grow | Temperature: 298 K / Method: vapor diffusion, hanging drop / pH: 4 Details: 0.05M Na Citrate, pH 3-4, 18% PEG 3350, 0.2M Li Acetate, VAPOR DIFFUSION, HANGING DROP, temperature 298K |
-Data collection
Diffraction | Mean temperature: 110 K |
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Diffraction source | Source: ![]() |
Detector | Type: MAR scanner 345 mm plate / Detector: IMAGE PLATE / Date: Feb 16, 2010 / Details: Rigaku Osmic VariMax |
Radiation | Monochromator: Ni FILTER / Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 1.5418 Å / Relative weight: 1 |
Reflection | Resolution: 2.3→17 Å / Num. all: 47340 / Num. obs: 44921 / % possible obs: 94.9 % / Observed criterion σ(F): 0 / Observed criterion σ(I): 0 / Redundancy: 1.75 % / Rmerge(I) obs: 0.0395 / Net I/σ(I): 24.88 |
Reflection shell | Resolution: 2.3→2.35 Å / Redundancy: 1.07 % / Rmerge(I) obs: 0.237 / Mean I/σ(I) obs: 2.92 / Num. unique all: 2047 / % possible all: 67.6 |
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Processing
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Refinement | Method to determine structure: ![]() Starting model: PDB ENTRY 4HIE Resolution: 2.3→17 Å / σ(F): 0 / Stereochemistry target values: Engh & Huber
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Refinement step | Cycle: LAST / Resolution: 2.3→17 Å
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Refine LS restraints |
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