- PDB-2xvs: Crystal structure of human TTC5 (Strap) C-terminal OB domain -
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基本情報
登録情報
データベース: PDB / ID: 2xvs
タイトル
Crystal structure of human TTC5 (Strap) C-terminal OB domain
要素
TETRATRICOPEPTIDE REPEAT PROTEIN 5
キーワード
ANTITUMOR PROTEIN / P53 COFACTOR / STRESS-RESPONSE / P300
機能・相同性
機能・相同性情報
positive regulation of mRNA catabolic process / cellular response to starvation / Regulation of TP53 Activity through Methylation / ribosome binding / cytoplasmic vesicle / mitochondrial matrix / DNA repair / DNA damage response / chromatin binding / positive regulation of transcription by RNA polymerase II ...positive regulation of mRNA catabolic process / cellular response to starvation / Regulation of TP53 Activity through Methylation / ribosome binding / cytoplasmic vesicle / mitochondrial matrix / DNA repair / DNA damage response / chromatin binding / positive regulation of transcription by RNA polymerase II / mitochondrion / DNA binding / nucleoplasm / cytosol 類似検索 - 分子機能
OB fold (Dihydrolipoamide Acetyltransferase, E2P) - #550 / Tetratricopeptide repeat protein 5, OB fold domain / TTC5, OB fold domain superfamily / Tetratricopeptide repeat protein 5 OB fold domain / TPR repeat region circular profile. / TPR repeat profile. / Tetratricopeptide repeats / Tetratricopeptide repeat / OB fold (Dihydrolipoamide Acetyltransferase, E2P) / Tetratricopeptide-like helical domain superfamily ...OB fold (Dihydrolipoamide Acetyltransferase, E2P) - #550 / Tetratricopeptide repeat protein 5, OB fold domain / TTC5, OB fold domain superfamily / Tetratricopeptide repeat protein 5 OB fold domain / TPR repeat region circular profile. / TPR repeat profile. / Tetratricopeptide repeats / Tetratricopeptide repeat / OB fold (Dihydrolipoamide Acetyltransferase, E2P) / Tetratricopeptide-like helical domain superfamily / Beta Barrel / Mainly Beta 類似検索 - ドメイン・相同性
IODIDE ION / Tetratricopeptide repeat protein 5 類似検索 - 構成要素
プロトコル: SINGLE WAVELENGTH / 単色(M)・ラウエ(L): M / 散乱光タイプ: x-ray
放射波長
波長: 0.99988 Å / 相対比: 1
反射
解像度: 1.8→33.3 Å / Num. obs: 14246 / % possible obs: 98.6 % / Observed criterion σ(I): 0 / 冗長度: 3.5 % / Biso Wilson estimate: 14.5 Å2 / Rmerge(I) obs: 0.1 / Net I/σ(I): 8.7
反射 シェル
解像度: 1.8→1.9 Å / 冗長度: 2.9 % / Rmerge(I) obs: 0.5 / Mean I/σ(I) obs: 2.1 / % possible all: 91
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解析
ソフトウェア
名称
バージョン
分類
REFMAC
5.5.0110
精密化
MOSFLM
データ削減
SCALA
データスケーリング
PHASER
位相決定
精密化
構造決定の手法: 分子置換 / 解像度: 1.8→78.77 Å / Cor.coef. Fo:Fc: 0.954 / Cor.coef. Fo:Fc free: 0.919 / SU B: 5.787 / SU ML: 0.089 / 交差検証法: THROUGHOUT / ESU R: 0.132 / ESU R Free: 0.139 / 立体化学のターゲット値: MAXIMUM LIKELIHOOD / 詳細: HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS.
Rfactor
反射数
%反射
Selection details
Rfree
0.23638
723
5.1 %
RANDOM
Rwork
0.17242
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obs
0.1755
13521
98.34 %
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溶媒の処理
イオンプローブ半径: 0.8 Å / 減衰半径: 0.8 Å / VDWプローブ半径: 1.4 Å / 溶媒モデル: MASK