- PDB-4abn: Crystal structure of full length mouse Strap (TTC5) -
+
Open data
ID or keywords:
Loading...
-
Basic information
Entry
Database: PDB / ID: 4abn
Title
Crystal structure of full length mouse Strap (TTC5)
Components
TETRATRICOPEPTIDE REPEAT PROTEIN 5
Keywords
GENE REGULATION / P53 COFACTOR / STRESS-RESPONSE / DNA REPAIR
Function / homology
Function and homology information
Regulation of TP53 Activity through Methylation / DNA repair / chromatin binding / positive regulation of transcription by RNA polymerase II / DNA binding / nucleoplasm / nucleus / cytoplasm Similarity search - Function
OB fold (Dihydrolipoamide Acetyltransferase, E2P) - #550 / Tetratricopeptide repeat protein 5, OB fold domain / TTC5, OB fold domain superfamily / Tetratricopeptide repeat protein 5 OB fold domain / : / Tetratricopeptide repeat domain / TPR repeat region circular profile. / Tetratricopeptide repeats / Tetratricopeptide repeat / Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat ...OB fold (Dihydrolipoamide Acetyltransferase, E2P) - #550 / Tetratricopeptide repeat protein 5, OB fold domain / TTC5, OB fold domain superfamily / Tetratricopeptide repeat protein 5 OB fold domain / : / Tetratricopeptide repeat domain / TPR repeat region circular profile. / Tetratricopeptide repeats / Tetratricopeptide repeat / Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat / Alpha Horseshoe / OB fold (Dihydrolipoamide Acetyltransferase, E2P) / Tetratricopeptide-like helical domain superfamily / Beta Barrel / Mainly Beta / Mainly Alpha Similarity search - Domain/homology
Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray
Radiation wavelength
Wavelength: 0.97892 Å / Relative weight: 1
Reflection
Resolution: 2.05→55.22 Å / Num. obs: 62502 / % possible obs: 99.9 % / Observed criterion σ(I): 0 / Redundancy: 3.7 % / Biso Wilson estimate: 31.5 Å2 / Rmerge(I) obs: 0.07 / Net I/σ(I): 10.7
Reflection shell
Resolution: 2.05→2.16 Å / Redundancy: 3.3 % / Rmerge(I) obs: 0.6 / Mean I/σ(I) obs: 2.1 / % possible all: 99.4
-
Processing
Software
Name
Version
Classification
REFMAC
5.6.0117
refinement
MOSFLM
datareduction
SCALA
datascaling
SHELXD
SHELXE
phasing
Refinement
Method to determine structure: SAD Starting model: NONE Resolution: 2.05→55 Å / Cor.coef. Fo:Fc: 0.956 / Cor.coef. Fo:Fc free: 0.936 / SU B: 9.086 / SU ML: 0.123 / Cross valid method: THROUGHOUT / ESU R: 0.188 / ESU R Free: 0.168 / Stereochemistry target values: MAXIMUM LIKELIHOOD Details: HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. U VALUES WITH TLS ADDED. LOCAL NCS RESTRAINTS USED.
Rfactor
Num. reflection
% reflection
Selection details
Rfree
0.23592
3146
5 %
RANDOM
Rwork
0.19305
-
-
-
obs
0.1952
59370
99.83 %
-
Solvent computation
Ion probe radii: 0.8 Å / Shrinkage radii: 0.8 Å / VDW probe radii: 1.2 Å / Solvent model: MASK