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Yorodumi- PDB-6oxb: First bromo-adjacent homology (BAH) domain of human Polybromo-1 (... -
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Open data
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Basic information
| Entry | Database: PDB / ID: 6oxb | ||||||
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| Title | First bromo-adjacent homology (BAH) domain of human Polybromo-1 (PBRM1) | ||||||
Components | Protein polybromo-1 | ||||||
Keywords | DNA BINDING PROTEIN / SWI/SNF chromatin remodeler / PBAF / bromodomain / BAH / acidic patch / nucleosome / DNA binding | ||||||
| Function / homology | Function and homology informationregulation of G0 to G1 transition / RSC-type complex / regulation of nucleotide-excision repair / SWI/SNF complex / regulation of mitotic metaphase/anaphase transition / positive regulation of T cell differentiation / nuclear chromosome / positive regulation of double-strand break repair / RUNX1 interacts with co-factors whose precise effect on RUNX1 targets is not known / regulation of G1/S transition of mitotic cell cycle ...regulation of G0 to G1 transition / RSC-type complex / regulation of nucleotide-excision repair / SWI/SNF complex / regulation of mitotic metaphase/anaphase transition / positive regulation of T cell differentiation / nuclear chromosome / positive regulation of double-strand break repair / RUNX1 interacts with co-factors whose precise effect on RUNX1 targets is not known / regulation of G1/S transition of mitotic cell cycle / positive regulation of myoblast differentiation / positive regulation of cell differentiation / transcription elongation by RNA polymerase II / kinetochore / RMTs methylate histone arginines / nuclear matrix / mitotic cell cycle / chromatin remodeling / negative regulation of cell population proliferation / chromatin binding / regulation of transcription by RNA polymerase II / chromatin / DNA binding / nucleoplasm / nucleus Similarity search - Function | ||||||
| Biological species | Homo sapiens (human) | ||||||
| Method | X-RAY DIFFRACTION / SYNCHROTRON / MOLECULAR REPLACEMENT / molecular replacement / Resolution: 1.86 Å | ||||||
Authors | Petojevic, T. / Holliday, M.J. / Fairbrother, W.J. / Cochran, A.G. | ||||||
Citation | Journal: To Be PublishedTitle: Polyvalent nucleosome recognition by Polybromo-1 anchors chromatin remodeling Authors: Petojevic, T. / Holliday, M.J. / Dimitrova, Y.N. / Noland, C.L. / Fairbrother, W.J. / Cochran, A.G. | ||||||
| History |
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Structure visualization
| Structure viewer | Molecule: Molmil Jmol/JSmol |
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Downloads & links
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Download
| PDBx/mmCIF format | 6oxb.cif.gz | 430.6 KB | Display | PDBx/mmCIF format |
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| PDB format | pdb6oxb.ent.gz | 353 KB | Display | PDB format |
| PDBx/mmJSON format | 6oxb.json.gz | Tree view | PDBx/mmJSON format | |
| Others | Other downloads |
-Validation report
| Summary document | 6oxb_validation.pdf.gz | 497.6 KB | Display | wwPDB validaton report |
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| Full document | 6oxb_full_validation.pdf.gz | 509.4 KB | Display | |
| Data in XML | 6oxb_validation.xml.gz | 43.3 KB | Display | |
| Data in CIF | 6oxb_validation.cif.gz | 61.7 KB | Display | |
| Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/ox/6oxb ftp://data.pdbj.org/pub/pdb/validation_reports/ox/6oxb | HTTPS FTP |
-Related structure data
| Related structure data | ![]() 1w4sS S: Starting model for refinement |
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| Similar structure data |
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Assembly
| Deposited unit | ![]()
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| Noncrystallographic symmetry (NCS) | NCS domain:
NCS domain segments: Ens-ID: 1
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About Yorodumi



Homo sapiens (human)
X-RAY DIFFRACTION
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