BIOMOLECULE: 1 THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT WHICH CONSISTS OF 1 CHAIN(S) ...BIOMOLECULE: 1 THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT WHICH CONSISTS OF 1 CHAIN(S). AUTHORS STATE THAT the biological unit information is unknown for this isolated domain.
Resolution: 1.35→19 Å / Cor.coef. Fo:Fc: 0.967 / Cor.coef. Fo:Fc free: 0.958 / SU B: 1.927 / SU ML: 0.035 / Isotropic thermal model: ANISOTROPIC / Cross valid method: THROUGHOUT / σ(F): 0 / σ(I): 0 / ESU R: 0.058 / ESU R Free: 0.056 / Stereochemistry target values: MAXIMUM LIKELIHOOD Details: HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. THE STRUCTURE FACTORS ARE TWINNED. TWIN TYPE: PARTIAL MEROHEDRAL TWIN TWIN FRACTION: 0.235 TWINNING RELATIONSHIP RELATES REFLECTIONS WITH ...Details: HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. THE STRUCTURE FACTORS ARE TWINNED. TWIN TYPE: PARTIAL MEROHEDRAL TWIN TWIN FRACTION: 0.235 TWINNING RELATIONSHIP RELATES REFLECTIONS WITH INDICES h,k,l to h,k,-l. Authors also state that the structure was refined using a combination of isotropic (atomic) and TLS refinement. The whole molecule was defined as one TLS group. The atomic B-values are reported as anisotropic B-values which were calculated by combining the isotropic B-values and TLS parameters using TLSANL program from the CCP4 suite.
Rfactor
Num. reflection
% reflection
Selection details
Rfree
0.195
635
5 %
RANDOM
Rwork
0.158
-
-
-
all
0.162
12697
-
-
obs
0.16
12044
92.35 %
-
Solvent computation
Ion probe radii: 0.8 Å / Shrinkage radii: 0.8 Å / VDW probe radii: 1.2 Å / Solvent model: BABINET MODEL WITH MASK
Displacement parameters
Biso mean: 20.64 Å2
Baniso -1
Baniso -2
Baniso -3
1-
0.27 Å2
0 Å2
0 Å2
2-
-
0.27 Å2
0 Å2
3-
-
-
-0.54 Å2
Refinement step
Cycle: LAST / Resolution: 1.35→19 Å
Protein
Nucleic acid
Ligand
Solvent
Total
Num. atoms
444
0
0
54
498
Refine LS restraints
Refine-ID
Type
Dev ideal
Dev ideal target
Number
X-RAY DIFFRACTION
r_bond_refined_d
0.026
0.022
454
X-RAY DIFFRACTION
r_bond_other_d
0.006
0.02
395
X-RAY DIFFRACTION
r_angle_refined_deg
2.434
1.951
611
X-RAY DIFFRACTION
r_angle_other_deg
2.462
3
932
X-RAY DIFFRACTION
r_dihedral_angle_1_deg
5.646
5
55
X-RAY DIFFRACTION
r_dihedral_angle_2_deg
47.024
27.391
23
X-RAY DIFFRACTION
r_dihedral_angle_3_deg
11.273
15
86
X-RAY DIFFRACTION
r_chiral_restr
0.122
0.2
68
X-RAY DIFFRACTION
r_gen_planes_refined
0.006
0.02
504
X-RAY DIFFRACTION
r_gen_planes_other
0
0.02
83
X-RAY DIFFRACTION
r_nbd_refined
0.224
0.2
66
X-RAY DIFFRACTION
r_nbd_other
0.166
0.2
365
X-RAY DIFFRACTION
r_nbtor_refined
0.194
0.2
207
X-RAY DIFFRACTION
r_nbtor_other
0.106
0.2
300
X-RAY DIFFRACTION
r_xyhbond_nbd_refined
0.17
0.2
33
X-RAY DIFFRACTION
r_symmetry_vdw_refined
0.57
0.2
5
X-RAY DIFFRACTION
r_symmetry_vdw_other
0.132
0.2
15
X-RAY DIFFRACTION
r_symmetry_hbond_refined
0.168
0.2
10
X-RAY DIFFRACTION
r_mcbond_it
4.339
2
363
X-RAY DIFFRACTION
r_mcbond_other
1.999
2
118
X-RAY DIFFRACTION
r_mcangle_it
4.937
3
443
X-RAY DIFFRACTION
r_scbond_it
6.546
4.5
211
X-RAY DIFFRACTION
r_scangle_it
8.73
6
168
X-RAY DIFFRACTION
r_rigid_bond_restr
3.274
3
1037
X-RAY DIFFRACTION
r_sphericity_free
13.886
3
54
X-RAY DIFFRACTION
r_sphericity_bonded
6.953
3
843
LS refinement shell
Resolution: 1.35→1.397 Å / Total num. of bins used: 15
Rfactor
Num. reflection
% reflection
Rfree
0.189
35
-
Rwork
0.225
758
-
obs
-
793
60.53 %
+
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