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Yorodumi- PDB-1fcc: CRYSTAL STRUCTURE OF THE C2 FRAGMENT OF STREPTOCOCCAL PROTEIN G I... -
+Open data
-Basic information
Entry | Database: PDB / ID: 1fcc | ||||||
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Title | CRYSTAL STRUCTURE OF THE C2 FRAGMENT OF STREPTOCOCCAL PROTEIN G IN COMPLEX WITH THE FC DOMAIN OF HUMAN IGG | ||||||
Components |
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Keywords | COMPLEX (ANTIBODY/ANTIGEN) / COMPLEX (ANTIBODY-ANTIGEN) / COMPLEX (ANTIBODY-ANTIGEN) complex | ||||||
Function / homology | Function and homology information complement-dependent cytotoxicity / antibody-dependent cellular cytotoxicity / IgG binding / Fc-gamma receptor I complex binding / Classical antibody-mediated complement activation / Initial triggering of complement / immunoglobulin complex, circulating / IgG immunoglobulin complex / immunoglobulin receptor binding / FCGR activation ...complement-dependent cytotoxicity / antibody-dependent cellular cytotoxicity / IgG binding / Fc-gamma receptor I complex binding / Classical antibody-mediated complement activation / Initial triggering of complement / immunoglobulin complex, circulating / IgG immunoglobulin complex / immunoglobulin receptor binding / FCGR activation / Role of phospholipids in phagocytosis / complement activation, classical pathway / antigen binding / FCGR3A-mediated IL10 synthesis / Regulation of Complement cascade / FCGR3A-mediated phagocytosis / B cell receptor signaling pathway / Regulation of actin dynamics for phagocytic cup formation / antibacterial humoral response / blood microparticle / Interleukin-4 and Interleukin-13 signaling / adaptive immune response / extracellular space / extracellular exosome / extracellular region / plasma membrane Similarity search - Function | ||||||
Biological species | Homo sapiens (human) Streptococcus (bacteria) | ||||||
Method | X-RAY DIFFRACTION / Resolution: 3.2 Å | ||||||
Authors | Sauer-Eriksson, A.E. / Kleywegt, G.J. / Uhlen, M. / Jones, T.A. | ||||||
Citation | Journal: Structure / Year: 1995 Title: Crystal structure of the C2 fragment of streptococcal protein G in complex with the Fc domain of human IgG. Authors: Sauer-Eriksson, A.E. / Kleywegt, G.J. / Uhlen, M. / Jones, T.A. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 1fcc.cif.gz | 97.9 KB | Display | PDBx/mmCIF format |
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PDB format | pdb1fcc.ent.gz | 81.2 KB | Display | PDB format |
PDBx/mmJSON format | 1fcc.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/fc/1fcc ftp://data.pdbj.org/pub/pdb/validation_reports/fc/1fcc | HTTPS FTP |
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-Related structure data
Similar structure data |
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-Links
-Assembly
Deposited unit |
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1 |
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Unit cell |
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Atom site foot note | 1: CIS PROLINE - PRO A 374 | ||||||||
Noncrystallographic symmetry (NCS) | NCS oper: (Code: given Matrix: (-0.700155, -0.700538, -0.138305), Vector: Details | MTRIX THE TRANSFORMATIONS PRESENTED ON MTRIX RECORDS BELOW DESCRIBE NON-CRYSTALLOGRAPHIC RELATIONSHIPS AMONG THE VARIOUS DOMAINS IN THIS ENTRY. APPLYING THE APPROPRIATE MTRIX TRANSFORMATION TO THE RESIDUES LISTED IN THIS ENTRY WILL YIELD APPROXIMATE COORDINATES FOR THE RESIDUES OF THE OTHER MONOMERS IN THE ASYMMETRIC UNIT NOT PRESENTED IN THIS ENTRY. | |
-Components
#1: Protein | Mass: 23519.654 Da / Num. of mol.: 2 Source method: isolated from a genetically manipulated source Source: (gene. exp.) Homo sapiens (human) / Cell line: HYBRIDOMA / Gene: N-TERMINAL FRAGMENT OF / Plasmid: PEB2ZHIS GENE: N-TERMINAL FRAGMENT OF / Production host: Escherichia coli (E. coli) / References: UniProt: P01857 #2: Protein | Mass: 6157.665 Da / Num. of mol.: 2 Source method: isolated from a genetically manipulated source Source: (gene. exp.) Streptococcus (bacteria) / Genus: Streptococcus / Cell line: HYBRIDOMA / Gene: N-TERMINAL FRAGMENT OF / Plasmid: PEB2ZHIS GENE: N-TERMINAL FRAGMENT OF / Production host: Escherichia coli (E. coli) / References: UniProt: P19909 Compound details | FIVE AMINO ACIDS DIFFER IN THEIR AMIDATION STATES AND TWO HAVE THE ALLOTYPIC MARKER: E119, M121. | |
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-Experimental details
-Experiment
Experiment | Method: X-RAY DIFFRACTION |
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-Sample preparation
Crystal | Density Matthews: 4.13 Å3/Da / Density % sol: 70.2 % |
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Crystal grow | *PLUS Method: vapor diffusion, hanging dropDetails: Jancarik, J., (1991) J. Appl. Crystallogr., 24, 409. |
Components of the solutions | *PLUS Conc.: 10 mg/ml / Common name: protein |
-Data collection
Radiation | Scattering type: x-ray |
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Radiation wavelength | Relative weight: 1 |
Reflection | Num. obs: 12297 / % possible obs: 72 % |
Reflection | *PLUS Highest resolution: 3.2 Å / Lowest resolution: 9999 Å / Num. measured all: 41581 / Rmerge(I) obs: 0.089 |
-Processing
Software |
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Refinement | Resolution: 3.2→8 Å
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Displacement parameters | Biso mean: 41.6 Å2 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement step | Cycle: LAST / Resolution: 3.2→8 Å
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Refine LS restraints |
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Refinement | *PLUS Highest resolution: 3.5 Å | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Solvent computation | *PLUS | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Displacement parameters | *PLUS | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refine LS restraints | *PLUS
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