- PDB-2lf3: Solution NMR structure of HopPmaL_281_385 from Pseudomonas syring... -
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基本情報
登録情報
データベース: PDB / ID: 2lf3
タイトル
Solution NMR structure of HopPmaL_281_385 from Pseudomonas syringae pv. maculicola str. ES4326, Midwest Center for Structural Genomics target APC40104.5 and Northeast Structural Genomics Consortium target PsT2A
要素
Effector protein hopAB3
キーワード
SIGNALING PROTEIN / type III effector / Structural Genomics / PSI-Biology / Protein Structure Initiative / Northeast Structural Genomics Consortium / NESG / Midwest Center for Structural Genomics / MCSG / Ontario Centre for Structural Proteomics / OCSP
機能・相同性
機能・相同性情報
symbiont-mediated perturbation of host defense-related programmed cell death / extracellular region 類似検索 - 分子機能
Effector protein HopAB, BAK1-interacting domain / Effector protein HopAB, BAK1-binding domain / Effector protein HopAB, BAK1-binding domain superfamily / Avirulence AvrPtoB, BAK1-binding domain / Effector protein HopAB, Pto-binding domain / Monooxygenase / Up-down Bundle / Mainly Alpha 類似検索 - ドメイン・相同性
0.3 mM [U-100% 13C; U-100% 15N] HopPmaL_281_385, 10 mM [U-100% 2H] TRIS, 300 mM sodium chloride, 10 uM zinc sulphate, 10 mM [U-100% 2H] DTT, 0.01 % NaN3, 10 mM benzamidine, 1 x inhibitor cocktail, 90% H2O/10% D2O
90% H2O/10% D2O
2
1 mM [U-100% 13C; U-100% 15N] HopPmaL,_281_385, 10 mM [U-100% 2H] TRIS 300 mM sodium chloride, 10 uM zinc sulphate, 10 mM [U-100% 2H] DTT, 0.01 % NaN3, 10 mM benzamidine, 1 x inhibitor cocktail, 90% H2O/10% D2O
90% H2O/10% D2O
3
0.2 mM [U-7% 13C; U-100% 15N] HopPmaL_281_385, 10 mM [U-100% 2H] TRIS, 300 mM sodium chloride, 10 uM zinc sulphate, 10 mM [U-100% 2H] DTT, 0.01 % NaN3, 10 mM benzamidine, 1 x inhibitor cocktail, 90% H2O/10% D2O
90% H2O/10% D2O
試料
濃度 (mg/ml)
構成要素
Isotopic labeling
Solution-ID
0.3mM
HopPmal_281_385-1
[U-100% 13C; U-100% 15N]
1
10mM
TRIS-2
[U-100% 2H]
1
300mM
sodium chloride-3
1
10uM
zinc sulphate-4
1
10mM
DTT-5
[U-100% 2H]
1
0.01 %
NaN3-6
1
10mM
benzamidine-7
1
1 %
inhibitor cocktail-8
1
1mM
HopPmal_281_385-9
[U-100% 13C; U-100% 15N]
2
10mM
TRIS-10
[U-100% 2H]
2
300mM
sodium chloride-11
2
10uM
zinc sulphate-12
2
10mM
DTT-13
[U-100% 2H]
2
0.01 %
NaN3-14
2
10mM
benzamidine-15
2
1 %
inhibitor cocktail-16
2
0.2mM
HopPmal_281_385-17
[U-7% 13C; U-100% 15N]
3
10mM
TRIS-18
[U-100% 2H]
3
300mM
sodium chloride-19
3
10uM
zinc sulphate-20
3
10mM
DTT-21
[U-100% 2H]
3
0.01 %
NaN3-22
3
10mM
benzamidine-23
3
1 %
inhibitor cocktail-24
3
試料状態
イオン強度: 300 / pH: 7.0 / 圧: ambient / 温度: 298 K
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NMR測定
NMRスペクトロメーター
タイプ
製造業者
モデル
磁場強度 (MHz)
Spectrometer-ID
Bruker Avance
Bruker
AVANCE
600
1
Bruker Avance
Bruker
AVANCE
800
2
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解析
NMR software
名称
バージョン
開発者
分類
NMRPipe
2.3
Delaglio, Grzesiek, Vuister, Zhu, PfeiferandBax
解析
MDDGUI
1
Gutmanas, Arrowsmith
解析
Sparky
3.95
Goddard
データ解析
FMCGUI
2.4
Lemak, Arrowsmith
chemicalshiftassignment
CYANA
3
Guntert, MumenthalerandWuthrich
構造決定
CNS
Brunger, Adams, Clore, Gros, NilgesandRead
精密化
AutoStructure
Huang, Tejero, PowersandMontelione
nmrstructurequalityassessment
PSVS
BhattacharyaandMontelione
nmrstructurequalityassessment
FAWN
Lemak, Arrowsmith
chemicalshiftassignment
精密化
手法: simulated annealing / ソフトェア番号: 1
代表構造
選択基準: lowest energy
NMRアンサンブル
コンフォーマー選択の基準: structures with the lowest energy 計算したコンフォーマーの数: 100 / 登録したコンフォーマーの数: 20