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Open data
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Basic information
Entry | Database: PDB / ID: 2jee | ||||||
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Title | Xray structure of E. coli YiiU | ||||||
![]() | CELL DIVISION PROTEIN ZAPB | ||||||
![]() | CELL CYCLE / FTSZ / SEPTUM / COILED-COIL / CELL DIVISION / HYPOTHETICAL PROTEIN | ||||||
Function / homology | ![]() FtsZ-dependent cytokinesis / division septum assembly / cell division site / identical protein binding / cytosol Similarity search - Function | ||||||
Biological species | ![]() ![]() | ||||||
Method | ![]() ![]() ![]() | ||||||
![]() | Moller-Jensen, J. / Gerdes, K. / Lowe, J. | ||||||
![]() | ![]() Title: Novel Coiled-Coil Cell Division Factor Zapb Stimulates Z Ring Assembly and Cell Division. Authors: Ebersbach, G. / Galli, E. / Moller-Jensen, J. / Lowe, J. / Gerdes, K. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 73.8 KB | Display | ![]() |
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PDB format | ![]() | 58.4 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 438.8 KB | Display | ![]() |
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Full document | ![]() | 448.6 KB | Display | |
Data in XML | ![]() | 13.5 KB | Display | |
Data in CIF | ![]() | 18.2 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Similar structure data |
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Links
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Assembly
Deposited unit | ![]()
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Unit cell |
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Noncrystallographic symmetry (NCS) | NCS domain:
NCS domain segments: Component-ID: 1 / Ens-ID: 1 / Beg auth comp-ID: MET / Beg label comp-ID: MET / End auth comp-ID: GLU / End label comp-ID: GLU / Refine code: 1 / Auth seq-ID: 3 - 80 / Label seq-ID: 3 - 80
NCS oper:
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Components
#1: Protein | Mass: 9645.781 Da / Num. of mol.: 4 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() ![]() ![]() #2: Water | ChemComp-HOH / | |
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-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 3.25 Å3/Da / Density % sol: 62 % / Description: NONE |
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-Data collection
Diffraction | Mean temperature: 100 K |
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Diffraction source | Source: ![]() ![]() ![]() |
Detector | Type: ADSC CCD / Detector: CCD / Date: Sep 25, 2005 |
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 0.9796 Å / Relative weight: 1 |
Reflection | Resolution: 2.8→30 Å / Num. obs: 11163 / % possible obs: 95.5 % / Observed criterion σ(I): 0 / Redundancy: 3.8 % / Rmerge(I) obs: 0.06 / Net I/σ(I): 12.1 |
Reflection shell | Resolution: 2.8→2.95 Å / Redundancy: 3.7 % / Rmerge(I) obs: 0.36 / Mean I/σ(I) obs: 2.7 / % possible all: 95.5 |
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Processing
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Refinement | Method to determine structure: ![]() Starting model: NONE Resolution: 2.8→76.7 Å / Cor.coef. Fo:Fc: 0.914 / Cor.coef. Fo:Fc free: 0.909 / SU B: 32.654 / SU ML: 0.478 / Cross valid method: THROUGHOUT / ESU R: 2.282 / ESU R Free: 0.456 / Stereochemistry target values: MAXIMUM LIKELIHOOD / Details: HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS.
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Solvent computation | Ion probe radii: 0.8 Å / Shrinkage radii: 0.8 Å / VDW probe radii: 1.4 Å / Solvent model: BABINET MODEL WITH MASK | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Displacement parameters | Biso mean: 108.45 Å2
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Refinement step | Cycle: LAST / Resolution: 2.8→76.7 Å
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Refine LS restraints |
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