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Open data
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Basic information
Entry | Database: PDB / ID: 2bjn | ||||||
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Title | X-ray Structure of human TPC6 | ||||||
![]() | TRAFFICKING PROTEIN PARTICLE COMPLEX SUBUNIT 6B | ||||||
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Function / homology | ![]() vesicle coating / vesicle tethering / TRAPPII protein complex / ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() Similarity search - Function | ||||||
Biological species | ![]() ![]() | ||||||
Method | ![]() ![]() ![]() | ||||||
![]() | Kummel, D. / Mueller, J.J. / Roske, Y. / Misselwitz, R. / Bussow, K. / Heinemann, U. | ||||||
![]() | ![]() Title: The Structure of the Trapp Subunit Tpc6 Suggests a Model for a Trapp Subcomplex. Authors: Kummel, D. / Mueller, J.J. / Roske, Y. / Misselwitz, R. / Bussow, K. / Heinemann, U. | ||||||
History |
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Remark 650 | HELIX DETERMINATION METHOD: AUTHOR PROVIDED. |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 71.7 KB | Display | ![]() |
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PDB format | ![]() | 59.7 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 298.4 KB | Display | ![]() |
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Full document | ![]() | 302.5 KB | Display | |
Data in XML | ![]() | 9.3 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Similar structure data |
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Links
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Assembly
Deposited unit | ![]()
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Unit cell |
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Components
#1: Protein | Mass: 18151.119 Da / Num. of mol.: 2 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() ![]() ![]() ![]() #2: Chemical | ChemComp-SO4 / ![]() #3: Chemical | ChemComp-GOL / ![]() #4: Water | ChemComp-HOH / | ![]() |
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-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 2.1 Å3/Da / Density % sol: 41 % |
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Crystal grow![]() | pH: 7.5 Details: 22-23%PEG3350,0.1M HEPES PH7.5, 0.3M(NH4)2SO4, pH 7.50 |
-Data collection
Diffraction | Mean temperature: 100 K |
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Diffraction source | Source: ![]() ![]() ![]() |
Detector | Type: MARRESEARCH / Detector: CCD / Date: Aug 6, 2004 / Details: MIRRORS |
Radiation | Monochromator: SI-111 / Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength![]() |
Reflection | Resolution: 1.7→23 Å / Num. obs: 32829 / % possible obs: 98.6 % / Observed criterion σ(I): 0 / Redundancy: 4.7 % / Rsym value: 0.05 / Net I/σ(I): 22.81 |
Reflection shell | Resolution: 1.7→1.76 Å / Redundancy: 3.9 % / Mean I/σ(I) obs: 2.27 / Rsym value: 0.48 / % possible all: 89.9 |
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Processing
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Refinement | Method to determine structure![]() ![]()
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Solvent computation | Ion probe radii: 0.8 Å / Shrinkage radii: 0.8 Å / VDW probe radii: 1.2 Å / Solvent model: MASK | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Displacement parameters | Biso mean: 31.48 Å2
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Refinement step | Cycle: LAST / Resolution: 1.7→22.98 Å
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Refine LS restraints |
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