Mass: 18.015 Da / Num. of mol.: 366 / Source method: isolated from a natural source / Formula: H2O
Compound details
THIS PROTEIN IS ESSENTIAL TO THE CELL-DIVISION PROCESS. IT SEEMS TO ASSEMBLE INTO A DYNAMIC RING ON ...THIS PROTEIN IS ESSENTIAL TO THE CELL-DIVISION PROCESS. IT SEEMS TO ASSEMBLE INTO A DYNAMIC RING ON THE INNER SURFACE OF THE CYTOPLASMIC MEMBRANE AT THE PLACE WHERE DIVISION WILL OCCUR. ENGINEERED MUTATIONS ASN 218 ARG, ASP 220 THR AND ASP 223 ARG IN CHAINS A AND B. THESE MUTATIONS ARE DUE TO THE REPLACEMENT OF THE SEQUENCE BETWEEN RESIDUES 217-225 (INLDFADIE) WITH IRLTSRFARIE. THE EXTRA TWO RESIDUES (SER 221 AND ARG 222) IN THE REPLACED SEQUENCE HAVE BEEN MAPPED TO THEMSELVES IN THE DBREF RECORDS GIVEN BELOW.
Sequence details
RESIDUES 217-225 OF THE UNIPROT REFERENCE GIVEN BELOW (INLD..FADIE) HAVE BEEN REPLACED WITH: ...RESIDUES 217-225 OF THE UNIPROT REFERENCE GIVEN BELOW (INLD..FADIE) HAVE BEEN REPLACED WITH: IRLTSRFARIE. THE EXTRA TWO RESIDUES IN THE INSERT (SER 221 AND ARG 222) HAVE BEEN MAPPED TO THEMSELVES IN THE DBREF RECORDS BELOW.
-
Experimental details
-
Experiment
Experiment
Method: X-RAY DIFFRACTION / Number of used crystals: 1
-
Sample preparation
Crystal
Density Matthews: 2.39 Å3/Da / Density % sol: 49 %
In the structure databanks used in Yorodumi, some data are registered as the other names, "COVID-19 virus" and "2019-nCoV". Here are the details of the virus and the list of structure data.
Jan 31, 2019. EMDB accession codes are about to change! (news from PDBe EMDB page)
EMDB accession codes are about to change! (news from PDBe EMDB page)
The allocation of 4 digits for EMDB accession codes will soon come to an end. Whilst these codes will remain in use, new EMDB accession codes will include an additional digit and will expand incrementally as the available range of codes is exhausted. The current 4-digit format prefixed with “EMD-” (i.e. EMD-XXXX) will advance to a 5-digit format (i.e. EMD-XXXXX), and so on. It is currently estimated that the 4-digit codes will be depleted around Spring 2019, at which point the 5-digit format will come into force.
The EM Navigator/Yorodumi systems omit the EMD- prefix.
Related info.:Q: What is EMD? / ID/Accession-code notation in Yorodumi/EM Navigator
Yorodumi is a browser for structure data from EMDB, PDB, SASBDB, etc.
This page is also the successor to EM Navigator detail page, and also detail information page/front-end page for Omokage search.
The word "yorodu" (or yorozu) is an old Japanese word meaning "ten thousand". "mi" (miru) is to see.
Related info.:EMDB / PDB / SASBDB / Comparison of 3 databanks / Yorodumi Search / Aug 31, 2016. New EM Navigator & Yorodumi / Yorodumi Papers / Jmol/JSmol / Function and homology information / Changes in new EM Navigator and Yorodumi