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- PDB-1rck: THE THREE DIMENSIONAL STRUCTURE OF GUANINE-SPECIFIC RIBONUCLEASE ... -

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Basic information

Entry
Database: PDB / ID: 1rck
TitleTHE THREE DIMENSIONAL STRUCTURE OF GUANINE-SPECIFIC RIBONUCLEASE F1 IN SOLUTION DETERMINED BY NMR SPECTROSCOPY AND DISTANCE GEOMETRY
ComponentsRIBONUCLEASE F1Ribonuclease T1
KeywordsHYDROLASE(ENDORIBONUCLEASE)
Function / homology
Function and homology information


ribonuclease T1 activity / ribonuclease T1 / endonuclease activity / lyase activity / RNA binding
Similarity search - Function
: / ribonuclease / Microbial ribonucleases / Ribonuclease/ribotoxin / Nuclear Transport Factor 2; Chain: A, / Roll / Alpha Beta
Similarity search - Domain/homology
Guanyl-specific ribonuclease F1
Similarity search - Component
Biological speciesGibberella fujikuroi (fungus)
MethodSOLUTION NMR
AuthorsNakai, T. / Yoshikawa, W. / Nakamura, H. / Yoshida, H.
Citation
Journal: Eur.J.Biochem. / Year: 1992
Title: The three-dimensional structure of guanine-specific ribonuclease F1 in solution determined by NMR spectroscopy and distance geometry.
Authors: Nakai, T. / Yoshikawa, W. / Nakamura, H. / Yoshida, H.
#1: Journal: To be Published
Title: Accurate Determination of Protein Conformations by Nuclear Magnetic Resonance Spectroscopy and Distance Geometry and Analysis of Their Structural Features
Authors: Nakai, T.
#2: Journal: J.Mol.Biol. / Year: 1993
Title: Crystal Structures of Ribonuclease F1 of Fusarium Moniliforme in its Free Form and in Complex with 2'Gmp
Authors: Vassylyev, D.G. / Katayanagi, K. / Ishikawa, K. / Tsujimoto-Hirano, M. / Danno, M. / Pahler, A. / Matsumoto, O. / Matsushima, M. / Yoshida, H. / Morikawa, K.
History
DepositionAug 8, 1994Processing site: BNL
Revision 1.0Nov 30, 1994Provider: repository / Type: Initial release
Revision 1.1Mar 3, 2008Group: Version format compliance
Revision 1.2Jul 13, 2011Group: Version format compliance
Revision 1.3Nov 29, 2017Group: Derived calculations / Other
Category: pdbx_database_status / pdbx_struct_assembly ...pdbx_database_status / pdbx_struct_assembly / pdbx_struct_oper_list / struct_conf / struct_conf_type
Item: _pdbx_database_status.process_site
Revision 2.0Dec 25, 2019Group: Database references / Derived calculations / Polymer sequence
Category: entity_poly / pdbx_struct_mod_residue ...entity_poly / pdbx_struct_mod_residue / struct_conn / struct_ref_seq_dif
Item: _entity_poly.pdbx_seq_one_letter_code_can / _pdbx_struct_mod_residue.parent_comp_id ..._entity_poly.pdbx_seq_one_letter_code_can / _pdbx_struct_mod_residue.parent_comp_id / _struct_conn.pdbx_leaving_atom_flag / _struct_ref_seq_dif.details

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Structure visualization

Structure viewerMolecule:
MolmilJmol/JSmol

Downloads & links

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Assembly

Deposited unit
A: RIBONUCLEASE F1


Theoretical massNumber of molelcules
Total (without water)10,9901
Polymers10,9901
Non-polymers00
Water0
1


  • Idetical with deposited unit
  • defined by author
TypeNameSymmetry operationNumber
identity operation1_5551
Atom site foot note1: CIS PROLINE - PRO 39 MODEL 1 / 2: CIS PROLINE - PRO 55 MODEL 1 / 3: CIS PROLINE - PRO 72 MODEL 1 / 4: CIS PROLINE - PRO 39 MODEL 2 / 5: CIS PROLINE - PRO 55 MODEL 2 / 6: CIS PROLINE - PRO 39 MODEL 3 / 7: CIS PROLINE - PRO 55 MODEL 3 / 8: CIS PROLINE - PRO 72 MODEL 3 / 9: CIS PROLINE - PRO 39 MODEL 4 / 10: CIS PROLINE - PRO 55 MODEL 4 / 11: CIS PROLINE - PRO 39 MODEL 5 / 12: CIS PROLINE - PRO 55 MODEL 5 / 13: CIS PROLINE - PRO 39 MODEL 6 / 14: CIS PROLINE - PRO 55 MODEL 6 / 15: CIS PROLINE - PRO 39 MODEL 7 / 16: CIS PROLINE - PRO 55 MODEL 7 / 17: CIS PROLINE - PRO 39 MODEL 8 / 18: CIS PROLINE - PRO 55 MODEL 8 / 19: CIS PROLINE - PRO 72 MODEL 8 / 20: CIS PROLINE - PRO 39 MODEL 9 / 21: CIS PROLINE - PRO 55 MODEL 9 / 22: CIS PROLINE - PRO 39 MODEL 10 / 23: CIS PROLINE - PRO 55 MODEL 10 / 24: CIS PROLINE - PRO 39 MODEL 11 / 25: CIS PROLINE - PRO 55 MODEL 11 / 26: CIS PROLINE - PRO 39 MODEL 12 / 27: CIS PROLINE - PRO 55 MODEL 12 / 28: CIS PROLINE - PRO 39 MODEL 13 / 29: CIS PROLINE - PRO 55 MODEL 13 / 30: CIS PROLINE - PRO 39 MODEL 14 / 31: CIS PROLINE - PRO 55 MODEL 14 / 32: CIS PROLINE - PRO 39 MODEL 15 / 33: CIS PROLINE - PRO 55 MODEL 15 / 34: CIS PROLINE - PRO 39 MODEL 16 / 35: CIS PROLINE - PRO 55 MODEL 16 / 36: CIS PROLINE - PRO 72 MODEL 16 / 37: CIS PROLINE - PRO 39 MODEL 17 / 38: CIS PROLINE - PRO 55 MODEL 17 / 39: CIS PROLINE - PRO 39 MODEL 18 / 40: CIS PROLINE - PRO 55 MODEL 18 / 41: CIS PROLINE - PRO 72 MODEL 18 / 42: CIS PROLINE - PRO 39 MODEL 19 / 43: CIS PROLINE - PRO 55 MODEL 19 / 44: CIS PROLINE - PRO 39 MODEL 20 / 45: CIS PROLINE - PRO 55 MODEL 20 / 46: CIS PROLINE - PRO 39 MODEL 21 / 47: CIS PROLINE - PRO 55 MODEL 21 / 48: CIS PROLINE - PRO 72 MODEL 21 / 49: CIS PROLINE - PRO 39 MODEL 22 / 50: CIS PROLINE - PRO 55 MODEL 22 / 51: CIS PROLINE - PRO 72 MODEL 22 / 52: CIS PROLINE - PRO 39 MODEL 23 / 53: CIS PROLINE - PRO 55 MODEL 23 / 54: CIS PROLINE - PRO 39 MODEL 24 / 55: CIS PROLINE - PRO 55 MODEL 24 / 56: CIS PROLINE - PRO 39 MODEL 25 / 57: CIS PROLINE - PRO 55 MODEL 25 / 58: CIS PROLINE - PRO 72 MODEL 25 / 59: CIS PROLINE - PRO 39 MODEL 26 / 60: CIS PROLINE - PRO 55 MODEL 26 / 61: CIS PROLINE - PRO 39 MODEL 27 / 62: CIS PROLINE - PRO 55 MODEL 27 / 63: CIS PROLINE - PRO 39 MODEL 28 / 64: CIS PROLINE - PRO 55 MODEL 28 / 65: CIS PROLINE - PRO 39 MODEL 29 / 66: CIS PROLINE - PRO 55 MODEL 29 / 67: CIS PROLINE - PRO 39 MODEL 30 / 68: CIS PROLINE - PRO 55 MODEL 30 / 69: CIS PROLINE - PRO 72 MODEL 30 / 70: CIS PROLINE - PRO 39 MODEL 31 / 71: CIS PROLINE - PRO 55 MODEL 31 / 72: CIS PROLINE - PRO 72 MODEL 31 / 73: CIS PROLINE - PRO 39 MODEL 32 / 74: CIS PROLINE - PRO 55 MODEL 32 / 75: CIS PROLINE - PRO 72 MODEL 32 / 76: CIS PROLINE - PRO 39 MODEL 33 / 77: CIS PROLINE - PRO 55 MODEL 33 / 78: CIS PROLINE - PRO 39 MODEL 34 / 79: CIS PROLINE - PRO 55 MODEL 34 / 80: CIS PROLINE - PRO 72 MODEL 34 / 81: CIS PROLINE - PRO 39 MODEL 35 / 82: CIS PROLINE - PRO 55 MODEL 35 / 83: CIS PROLINE - PRO 39 MODEL 36 / 84: CIS PROLINE - PRO 55 MODEL 36 / 85: CIS PROLINE - PRO 39 MODEL 37 / 86: CIS PROLINE - PRO 55 MODEL 37 / 87: CIS PROLINE - PRO 39 MODEL 38 / 88: CIS PROLINE - PRO 55 MODEL 38 / 89: CIS PROLINE - PRO 39 MODEL 39 / 90: CIS PROLINE - PRO 55 MODEL 39 / 91: CIS PROLINE - PRO 39 MODEL 40 / 92: CIS PROLINE - PRO 55 MODEL 40 / 93: CIS PROLINE - PRO 72 MODEL 40 / 94: CIS PROLINE - PRO 39 MODEL 41 / 95: CIS PROLINE - PRO 55 MODEL 41 / 96: CIS PROLINE - PRO 72 MODEL 41 / 97: CIS PROLINE - PRO 39 MODEL 42 / 98: CIS PROLINE - PRO 55 MODEL 42
NMR ensembles
DataCriteria
Number of conformers (submitted / calculated)42 / -
Representative

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Components

#1: Protein RIBONUCLEASE F1 / Ribonuclease T1


Mass: 10989.544 Da / Num. of mol.: 1
Source method: isolated from a genetically manipulated source
Source: (gene. exp.) Gibberella fujikuroi (fungus) / References: UniProt: P10282, EC: 3.1.27.3

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Experimental details

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Experiment

ExperimentMethod: SOLUTION NMR

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Processing

NMR software
NameDeveloperClassification
EMBOSSNAKAI,KIDERA,NAKAMURArefinement
PRESTOMORIKAMI,NAKAI,KIDERA,SAITO,NAKAMURArefinement
NMR ensembleConformers submitted total number: 42

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