Resolution: 1.75→1.83 Å / % possible obs: 39.06 % / Rmerge(I) obs: 0.418 / Mean I/σ(I) obs: 1 / Num. unique all: 4480
-
Processing
Software
Name
Version
Classification
CrystalClear
1.3
datacollection
CrystalClear
1.3
datareduction
X-PLOR
3.851
refinement
CrystalClear
(MSC/RIGAKU)
datascaling
Quanta
modelbuilding
Refinement
Method to determine structure: FOURIER SYNTHESIS / Resolution: 1.75→7 Å / Cross valid method: THROUGHOUT / σ(F): 1.1 / Stereochemistry target values: X-PLOR force field Details: Asp_H21, Met_H84, His_H119, Val_H157 were simultaneously refined in two conformations. Residues after Ile_L16K (light chain) have weak or no density, and are not included in the model. ...Details: Asp_H21, Met_H84, His_H119, Val_H157 were simultaneously refined in two conformations. Residues after Ile_L16K (light chain) have weak or no density, and are not included in the model. Density is absent for the last two residues of the heavy chain, which are not included in the model. No density was observed for Thr147, Trp148, Thr149, Ala149A, Asn149B, Val149C, Gly149D, and Lys149E in the autolysis loop, and these residues are not included in the model. In the non-active site peptide inhibitor (acetylhirudin) the tyrosine hydroxyl is sulfonated. HOH477, OgSer195 and O6' and N3 of the inhibitor make a 3-centered short hydrogen bond array. Disordered waters include: HOH_395 is close to a symmetry related equivalent of itself. AHOH_393 is close to BHOH_393. AHOH_394 is close to a symmetry related equivalent of itself. BHOH_395 is close to a symmetry related equivalent of itself. HOH_393, HOH_394, and HOH_395 form a cluster of density Density for these "waters" is greater than for real waters, so occupancies were refined. AHOH_674 is close to BHOH_674.
Rfactor
Num. reflection
% reflection
Rfree
0.238
2688
10 %
Rwork
0.208
-
-
obs
0.21
26771
74.29 %
all
-
36036
-
Refinement step
Cycle: LAST / Resolution: 1.75→7 Å
Protein
Nucleic acid
Ligand
Solvent
Total
Num. atoms
2392
0
30
118
2540
Refine LS restraints
Refine-ID
Type
Dev ideal
X-RAY DIFFRACTION
x_bond_d
0.018
X-RAY DIFFRACTION
x_angle_deg
3.6
+
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