+Open data
-Basic information
Entry | Database: PDB / ID: 1.0E+78 | ||||||
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Title | Crystal structure of human serum albumin | ||||||
Components | SERUM ALBUMIN | ||||||
Keywords | CARRIER PROTEIN / ALBUMIN | ||||||
Function / homology | Function and homology information cellular response to calcium ion starvation / exogenous protein binding / Ciprofloxacin ADME / enterobactin binding / Heme biosynthesis / HDL remodeling / negative regulation of mitochondrial depolarization / Prednisone ADME / Heme degradation / Aspirin ADME ...cellular response to calcium ion starvation / exogenous protein binding / Ciprofloxacin ADME / enterobactin binding / Heme biosynthesis / HDL remodeling / negative regulation of mitochondrial depolarization / Prednisone ADME / Heme degradation / Aspirin ADME / antioxidant activity / toxic substance binding / small molecule binding / Scavenging of heme from plasma / Recycling of bile acids and salts / cellular response to starvation / platelet alpha granule lumen / fatty acid binding / Post-translational protein phosphorylation / Cytoprotection by HMOX1 / Regulation of Insulin-like Growth Factor (IGF) transport and uptake by Insulin-like Growth Factor Binding Proteins (IGFBPs) / pyridoxal phosphate binding / Platelet degranulation / protein-folding chaperone binding / blood microparticle / copper ion binding / endoplasmic reticulum lumen / Golgi apparatus / endoplasmic reticulum / protein-containing complex / DNA binding / extracellular space / extracellular exosome / extracellular region / identical protein binding / nucleus / cytoplasm Similarity search - Function | ||||||
Biological species | HOMO SAPIENS (human) | ||||||
Method | X-RAY DIFFRACTION / SYNCHROTRON / MOLECULAR REPLACEMENT / Resolution: 2.6 Å | ||||||
Authors | Bhattacharya, A.A. / Curry, S. / Franks, N.P. | ||||||
Citation | Journal: J.Biol.Chem. / Year: 2000 Title: Binding of the General Anesthetics Propofol and Halothane to Human Serum Albumin. High Resolution Crystal Structures Authors: Bhattacharya, A.A. / Curry, S. / Franks, N.P. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 1e78.cif.gz | 225.4 KB | Display | PDBx/mmCIF format |
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PDB format | pdb1e78.ent.gz | 178.4 KB | Display | PDB format |
PDBx/mmJSON format | 1e78.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Summary document | 1e78_validation.pdf.gz | 430 KB | Display | wwPDB validaton report |
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Full document | 1e78_full_validation.pdf.gz | 472.7 KB | Display | |
Data in XML | 1e78_validation.xml.gz | 44.2 KB | Display | |
Data in CIF | 1e78_validation.cif.gz | 59.8 KB | Display | |
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/e7/1e78 ftp://data.pdbj.org/pub/pdb/validation_reports/e7/1e78 | HTTPS FTP |
-Related structure data
Related structure data | 1e7aC 1e7bC 1e7cC 1ao6S S: Starting model for refinement C: citing same article (ref.) |
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Similar structure data |
-Links
-Assembly
Deposited unit |
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1 |
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2 |
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Unit cell |
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Noncrystallographic symmetry (NCS) | NCS oper: (Code: given Matrix: (0.4415, 0.8968, 0.0291), Vector: Details | ACTIVE AS MONOMER, TWO MOLECULES IN ASYMMETRIC UNIT | |
-Components
#1: Protein | Mass: 66571.219 Da / Num. of mol.: 2 Source method: isolated from a genetically manipulated source Source: (gene. exp.) HOMO SAPIENS (human) / Production host: SACCHAROMYCES CEREVISIAE (brewer's yeast) / References: UniProt: P02768 #2: Water | ChemComp-HOH / | Compound details | SERUM ALBUMIN, REGULATES THE COLLOIDAL OSMOTIC PRESSURE OF BLOOD IT BINDS TO WATER, CA++, NA+, K+, ...SERUM ALBUMIN, REGULATES THE COLLOIDAL OSMOTIC PRESSURE OF BLOOD IT BINDS TO WATER, CA++, NA+, K+, FATTY ACIDS, HORMONES, BILIRUBIN AND DRUGS | Sequence details | RESIDUES 1-24 IN P02768 ENTRY ARE SIGNAL SEQUENCE. RESIDUE | |
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-Experimental details
-Experiment
Experiment | Method: X-RAY DIFFRACTION / Number of used crystals: 1 |
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-Sample preparation
Crystal | Density Matthews: 2.44 Å3/Da / Density % sol: 49.63 % | |||||||||||||||
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Crystal grow | pH: 7 / Details: pH 7.00 | |||||||||||||||
Crystal grow | *PLUS Temperature: 4 ℃ / Method: vapor diffusion, sitting drop | |||||||||||||||
Components of the solutions | *PLUS
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-Data collection
Diffraction | Mean temperature: 298 K |
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Diffraction source | Source: SYNCHROTRON / Site: SRS / Beamline: PX9.6 / Wavelength: 0.87 |
Detector | Type: ADSC / Detector: CCD / Date: Oct 15, 1999 / Details: MIRRORS |
Radiation | Monochromator: SI CRYSTAL / Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 0.87 Å / Relative weight: 1 |
Reflection | Resolution: 2.6→36.3 Å / Num. obs: 37956 / % possible obs: 97.5 % / Observed criterion σ(I): 0 / Redundancy: 2 % / Rmerge(I) obs: 0.045 / Rsym value: 0.045 / Net I/σ(I): 4 |
Reflection shell | Resolution: 2.6→2.74 Å / Redundancy: 2 % / Rmerge(I) obs: 0.251 / Mean I/σ(I) obs: 1.3 / Rsym value: 0.251 / % possible all: 97.3 |
Reflection shell | *PLUS % possible obs: 97.3 % |
-Processing
Software |
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Refinement | Method to determine structure: MOLECULAR REPLACEMENT Starting model: 1AO6 Resolution: 2.6→40 Å / Rfactor Rfree error: 0.006 / Data cutoff high absF: 10000000 / Data cutoff low absF: 0.001 / Isotropic thermal model: RESTRAINED / Cross valid method: THROUGHOUT / σ(F): 0 Details: BULK SOLVENT MODEL USED REFINEMENT WAS PERFORMED WITH MAX ALLOWABLE TEMPERATURE FACTOR OF 150
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Displacement parameters | Biso mean: 73.2 Å2
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Refine analyze | Luzzati d res low obs: 40 Å | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement step | Cycle: LAST / Resolution: 2.6→40 Å
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Refine LS restraints |
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LS refinement shell | Resolution: 2.6→2.72 Å / Rfactor Rfree error: 0.025 / Total num. of bins used: 8
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Xplor file |
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Software | *PLUS Name: X-PLOR / Version: 3.851 / Classification: refinement | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refine LS restraints | *PLUS
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