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Open data
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Basic information
Entry | Database: PDB / ID: 1ao6 | ||||||
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Title | CRYSTAL STRUCTURE OF HUMAN SERUM ALBUMIN | ||||||
![]() | SERUM ALBUMIN | ||||||
![]() | CARRIER PROTEIN / ALBUMIN | ||||||
Function / homology | ![]() cellular response to calcium ion starvation / exogenous protein binding / Ciprofloxacin ADME / enterobactin binding / Heme biosynthesis / HDL remodeling / negative regulation of mitochondrial depolarization / Prednisone ADME / Heme degradation / Aspirin ADME ...cellular response to calcium ion starvation / exogenous protein binding / Ciprofloxacin ADME / enterobactin binding / Heme biosynthesis / HDL remodeling / negative regulation of mitochondrial depolarization / Prednisone ADME / Heme degradation / Aspirin ADME / antioxidant activity / toxic substance binding / small molecule binding / Scavenging of heme from plasma / Recycling of bile acids and salts / cellular response to starvation / platelet alpha granule lumen / fatty acid binding / Post-translational protein phosphorylation / Cytoprotection by HMOX1 / Regulation of Insulin-like Growth Factor (IGF) transport and uptake by Insulin-like Growth Factor Binding Proteins (IGFBPs) / pyridoxal phosphate binding / Platelet degranulation / protein-folding chaperone binding / blood microparticle / copper ion binding / endoplasmic reticulum lumen / Golgi apparatus / endoplasmic reticulum / protein-containing complex / DNA binding / extracellular space / extracellular exosome / extracellular region / identical protein binding / nucleus / cytoplasm Similarity search - Function | ||||||
Biological species | ![]() | ||||||
Method | ![]() ![]() | ||||||
![]() | Sugio, S. / Mochizuki, S. / Noda, M. / Kashima, A. | ||||||
![]() | ![]() Title: Crystal structure of human serum albumin at 2.5 A resolution. Authors: Sugio, S. / Kashima, A. / Mochizuki, S. / Noda, M. / Kobayashi, K. #1: ![]() Title: Structure of Serum Albumin Authors: Carter, D.C. / Ho, J.X. #2: ![]() Title: Preliminary Crystallographic Studies of Four Crystal Forms of Serum Albumin Authors: Carter, D.C. / Chang, B. / Ho, J.X. / Keeling, K. / Krishnasami, Z. #3: ![]() Title: Erratum. Atomic Structure and Chemistry of Human Serum Albumin Authors: He, X.M. / Carter, D.C. #4: ![]() Title: Atomic Structure and Chemistry of Human Serum Albumin Authors: He, X.M. / Carter, D.C. #5: ![]() Title: Structure of Human Serum Albumin Authors: Carter, D.C. / He, X.M. #6: ![]() Title: Three-Dimensional Structure of Human Serum Albumin Authors: Carter, D.C. / He, X.M. / Munson, S.H. / Twigg, P.D. / Gernert, K.M. / Broom, M.B. / Miller, T.Y. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 229 KB | Display | ![]() |
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PDB format | ![]() | 186.9 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 439.1 KB | Display | ![]() |
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Full document | ![]() | 465.8 KB | Display | |
Data in XML | ![]() | 41.1 KB | Display | |
Data in CIF | ![]() | 56.5 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
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Links
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Assembly
Deposited unit | ![]()
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1 | ![]()
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2 | ![]()
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Unit cell |
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Components
#1: Protein | Mass: 66571.219 Da / Num. of mol.: 2 / Source method: isolated from a natural source / Source: (natural) ![]() #2: Water | ChemComp-HOH / | |
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-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 2.44 Å3/Da / Density % sol: 49.51 % | |||||||||||||||||||||||||
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Crystal grow | pH: 7.5 Details: PROTEIN WAS CRYSTALLIZED FROM 22-25% PEG 3350, 50 MM POTASSIUM PHOSPHATE, PH 7.0-7.5. PH range: 7.0-7.5 | |||||||||||||||||||||||||
Crystal | *PLUS Density % sol: 77 % | |||||||||||||||||||||||||
Crystal grow | *PLUS Temperature: 293 K / Method: vapor diffusion, hanging drop / PH range low: 5.5 / PH range high: 5 | |||||||||||||||||||||||||
Components of the solutions | *PLUS
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-Data collection
Diffraction | Mean temperature: 293 K |
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Diffraction source | Source: ![]() |
Detector | Type: RIGAKU RAXIS IIC / Detector: IMAGE PLATE / Date: May 10, 1996 / Details: YALE MIRRORS |
Radiation | Monochromator: NI FILTER / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 1.5418 Å / Relative weight: 1 |
Reflection | Resolution: 2.38→93.62 Å / Num. obs: 40737 / % possible obs: 81.4 % / Observed criterion σ(I): 1 / Redundancy: 2.2 % / Biso Wilson estimate: 40.9 Å2 / Rmerge(I) obs: 0.097 / Net I/σ(I): 9.35 |
Reflection shell | Resolution: 2.38→2.5 Å / Rmerge(I) obs: 0.272 / Mean I/σ(I) obs: 2.41 / % possible all: 46.9 |
Reflection shell | *PLUS % possible obs: 46.9 % |
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Processing
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Refinement | Method to determine structure: ![]() Starting model: A PARTIAL MODEL FROM MIR EXPERIMENT WITH THE KNOWN TETRAGONAL CRYSTAL FORM Resolution: 2.5→50 Å / Rfactor Rfree error: 0.005 / Data cutoff high absF: 100000 / Data cutoff low absF: 0.1 / Isotropic thermal model: RESTRAINED / Cross valid method: POSTERIORI / σ(F): 0 Details: THE AUTHORS USED BULK SOLVENT CORRECTION AND WEIGHTING SCHEME DEPENDENT ON RESOLUTIONS.
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Displacement parameters | Biso mean: 48.5 Å2 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refine analyze | Luzzati coordinate error obs: 0.3 Å / Luzzati d res low obs: 5 Å | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement step | Cycle: LAST / Resolution: 2.5→50 Å
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Refine LS restraints |
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LS refinement shell | Resolution: 2.5→2.59 Å / Rfactor Rfree error: 0.021 / Total num. of bins used: 10
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Xplor file |
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Software | *PLUS Name: ![]() | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refine LS restraints | *PLUS
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LS refinement shell | *PLUS Rfactor Rwork: 0.26 / Rfactor obs: 0.26 |