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Yorodumi- PDB-1ccm: DIRECT NOE REFINEMENT OF CRAMBIN FROM 2D NMR DATA USING A SLOW-CO... -
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-Basic information
Entry | Database: PDB / ID: 1ccm | ||||||
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Title | DIRECT NOE REFINEMENT OF CRAMBIN FROM 2D NMR DATA USING A SLOW-COOLING ANNEALING PROTOCOL | ||||||
Components | CRAMBIN | ||||||
Keywords | PLANT SEED PROTEIN | ||||||
Function / homology | Function and homology information | ||||||
Biological species | Crambe hispanica subsp. abyssinica (Abyssinian crambe) | ||||||
Method | SOLUTION NMR | ||||||
Authors | Bonvin, A.M.J.J. / Rullmann, J.A.C. / Lamerichs, R.M.J.N. / Boelens, R. / Kaptein, R. | ||||||
Citation | Journal: Proteins / Year: 1993 Title: "Ensemble" iterative relaxation matrix approach: a new NMR refinement protocol applied to the solution structure of crambin. Authors: Bonvin, A.M. / Rullmann, J.A. / Lamerichs, R.M. / Boelens, R. / Kaptein, R. #1: Journal: Proteins / Year: 1993 Title: "Ensemble" Iterative Relaxation Matrix Approach: A New NMR Refinement Protocol Applied to the Solution Structure of Crambin Authors: Bonvin, A.M.J.J. / Rullmann, J.A.C. / Lamerichs, R.M.J.N. / Boelens, R. / Kaptein, R. #2: Journal: COMPUTATION OF BIOMOLECULAR STRUCTURES; ACHIEVEMENTS PROBLEMS, AND PERSPECTIVES Year: 1992 Title: Structure Determination by NMR-Application to Crambin Authors: Rullmann, J.A.C. / Bonvin, A.M.J.J. / Boelens, R. / Kaptein, R. #3: Journal: Thesis / Year: 1989 Title: 2D NMR Studies of Biomolecules: Protein Structure and Protein-DNA Interactions Authors: Lamerichs, R.M.J.M. #4: Journal: Eur.J.Biochem. / Year: 1988 Title: Secondary Structure and Hydrogen Bonding of Crambin in Solution Authors: Lamerichs, R.M.J.N. / Berliner, L.J. / Boelens, R. / Demarco, A. / Llinas, M. / Kaptein, R. #5: Journal: FEBS Lett. / Year: 1987 Title: 1H NMR Characterization of Two Crambin Species Authors: Vermeulen, J.A.W.H. / Lamerichs, R.M.J.M. / Berliner, L.J. / Demarco, A. / Llinas, M. / Boelens, R. / Alleman, J. / Kaptein, R. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 1ccm.cif.gz | 52.3 KB | Display | PDBx/mmCIF format |
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PDB format | pdb1ccm.ent.gz | 40.5 KB | Display | PDB format |
PDBx/mmJSON format | 1ccm.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/cc/1ccm ftp://data.pdbj.org/pub/pdb/validation_reports/cc/1ccm | HTTPS FTP |
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-Related structure data
Related structure data | |
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Similar structure data |
-Links
-Assembly
Deposited unit |
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1 |
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Atom site foot note | 1: ARG 17 - LEU 18 OMEGA ANGLE = 147.581 PEPTIDE BOND DEVIATES SIGNIFICANTLY FROM TRANS CONFORMATION IN MODEL 7 | |||||||||
NMR ensembles |
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-Components
#1: Protein/peptide | Mass: 4738.447 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) Crambe hispanica subsp. abyssinica (Abyssinian crambe) Species: Crambe hispanica / Strain: subsp. abyssinica / References: UniProt: P01542 |
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-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR |
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-Sample preparation
Crystal grow | *PLUS Method: other / Details: NMR |
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-Processing
NMR software | Name: GROMOS / Developer: VAN GUNSTEREN,BERENDSEN / Classification: refinement |
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NMR ensemble | Conformers submitted total number: 8 |