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Yorodumi- PDB-1cnr: CORRELATED DISORDER OF THE PURE PRO22(SLASH)LEU25 FORM OF CRAMBIN... -
+Open data
-Basic information
Entry | Database: PDB / ID: 1cnr | ||||||
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Title | CORRELATED DISORDER OF THE PURE PRO22(SLASH)LEU25 FORM OF CRAMBIN AT 150K REFINED TO 1.05 ANGSTROMS RESOLUTION | ||||||
Components | CRAMBIN | ||||||
Keywords | PLANT SEED PROTEIN | ||||||
Function / homology | Function and homology information | ||||||
Biological species | Crambe hispanica subsp. abyssinica (Abyssinian crambe) | ||||||
Method | X-RAY DIFFRACTION / Resolution: 1.05 Å | ||||||
Authors | Yamano, A. / Teeter, M.M. | ||||||
Citation | Journal: J.Biol.Chem. / Year: 1994 Title: Correlated disorder of the pure Pro22/Leu25 form of crambin at 150 K refined to 1.05-A resolution. Authors: Yamano, A. / Teeter, M.M. #1: Journal: J.Mol.Biol. / Year: 1993 Title: Atomic Resolution (0.83 Angstroms) Crystal Structure of the Hydrophobic Protein Crambin at 130K Authors: Teeter, M.M. / Roe, S.M. / Heo, N.H. #2: Journal: Acta Crystallogr.,Sect.B / Year: 1988 Title: Cryocrystallography of Biological Macromolecules: A Generally Applicable Method Authors: Hope, H. #3: Journal: Nature / Year: 1981 Title: Structure of the Hydrophobic Protein Crambin Determined Directly from the Anomalous Scattering of Sulphur Authors: Hendrickson, W.A. / Teeter, M.M. #4: Journal: J.Mol.Biol. / Year: 1979 Title: Highly Ordered Crystals of the Plant Seed Protein Crambin Authors: Teeter, M.M. / Hendrickson, W.A. | ||||||
History |
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Remark 700 | SHEET SHEET S2 CONSISTS OF ONE STRAND WITH NO HYDROGEN BONDS. ONLY THE BACKBONE ATOMS ARE BETA. |
-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 1cnr.cif.gz | 23.3 KB | Display | PDBx/mmCIF format |
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PDB format | pdb1cnr.ent.gz | 18.2 KB | Display | PDB format |
PDBx/mmJSON format | 1cnr.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Summary document | 1cnr_validation.pdf.gz | 352.9 KB | Display | wwPDB validaton report |
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Full document | 1cnr_full_validation.pdf.gz | 352.9 KB | Display | |
Data in XML | 1cnr_validation.xml.gz | 2.3 KB | Display | |
Data in CIF | 1cnr_validation.cif.gz | 2.9 KB | Display | |
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/cn/1cnr ftp://data.pdbj.org/pub/pdb/validation_reports/cn/1cnr | HTTPS FTP |
-Related structure data
Similar structure data |
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-Links
-Assembly
Deposited unit |
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1 |
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Unit cell |
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-Components
#1: Protein/peptide | Mass: 4738.447 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) Crambe hispanica subsp. abyssinica (Abyssinian crambe) Species: Crambe hispanica / Strain: subsp. abyssinica / References: UniProt: P01542 |
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#2: Chemical | ChemComp-EOH / |
Sequence details | SEQUENCE ADVISORY NOTICE DIFFERENCE BETWEEN SWISS-PROT AND PDB SEQUENCE. SWISS-PROT ENTRY NAME: ...SEQUENCE ADVISORY NOTICE DIFFERENCE |
-Experimental details
-Experiment
Experiment | Method: X-RAY DIFFRACTION |
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-Sample preparation
Crystal | Density Matthews: 1.74 Å3/Da / Density % sol: 29.34 % | ||||||||||||||||||||
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Crystal grow | *PLUS Temperature: 20 ℃ / Method: vapor diffusion | ||||||||||||||||||||
Components of the solutions | *PLUS
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-Data collection
Radiation | Scattering type: x-ray |
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Radiation wavelength | Relative weight: 1 |
Reflection | *PLUS Highest resolution: 1.05 Å / Num. obs: 14765 / % possible obs: 93.85 % |
Reflection shell | *PLUS Highest resolution: 1.05 Å / Lowest resolution: 1.07 Å / Num. unique obs: 363 |
-Processing
Software | Name: PROLSQ / Classification: refinement | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Refinement | Rfactor obs: 0.105 / Highest resolution: 1.05 Å | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement step | Cycle: LAST / Highest resolution: 1.05 Å
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Refine LS restraints |
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Software | *PLUS Name: PROLSQ / Classification: refinement | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement | *PLUS Rfactor obs: 0.105 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Solvent computation | *PLUS | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Displacement parameters | *PLUS |