+Open data
-Basic information
Entry | Database: PDB / ID: 1aro | ||||||
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Title | T7 RNA POLYMERASE COMPLEXED WITH T7 LYSOZYME | ||||||
Components |
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Keywords | COMPLEX (POLYMERASE/HYDROLASE) / TRANSCRIPTION / DNA-DIRECTED RNA POLYMERASE / HYDROLASE / GLYCOSIDASE / COMPLEX (POLYMERASE-HYDROLASE) / COMPLEX (POLYMERASE-HYDROLASE) complex | ||||||
Function / homology | Function and homology information N-acetylmuramoyl-L-alanine amidase / DNA-templated viral transcription / N-acetylmuramoyl-L-alanine amidase activity / negative regulation of viral transcription / viral release from host cell by cytolysis / peptidoglycan catabolic process / DNA-directed RNA polymerase complex / DNA-directed 5'-3' RNA polymerase activity / DNA-directed RNA polymerase / host cell cytoplasm ...N-acetylmuramoyl-L-alanine amidase / DNA-templated viral transcription / N-acetylmuramoyl-L-alanine amidase activity / negative regulation of viral transcription / viral release from host cell by cytolysis / peptidoglycan catabolic process / DNA-directed RNA polymerase complex / DNA-directed 5'-3' RNA polymerase activity / DNA-directed RNA polymerase / host cell cytoplasm / defense response to bacterium / DNA-templated transcription / DNA binding / zinc ion binding Similarity search - Function | ||||||
Biological species | Enterobacteria phage T7 (virus) | ||||||
Method | X-RAY DIFFRACTION / SYNCHROTRON / MIR / Resolution: 2.8 Å | ||||||
Authors | Steitz, T. / Jeruzalmi, D. | ||||||
Citation | Journal: EMBO J. / Year: 1998 Title: Structure of T7 RNA polymerase complexed to the transcriptional inhibitor T7 lysozyme. Authors: Jeruzalmi, D. / Steitz, T.A. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 1aro.cif.gz | 198.9 KB | Display | PDBx/mmCIF format |
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PDB format | pdb1aro.ent.gz | 154.9 KB | Display | PDB format |
PDBx/mmJSON format | 1aro.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/ar/1aro ftp://data.pdbj.org/pub/pdb/validation_reports/ar/1aro | HTTPS FTP |
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-Related structure data
Similar structure data |
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-Links
-Assembly
Deposited unit |
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1 |
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Unit cell |
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-Components
#1: Protein | Mass: 98936.039 Da / Num. of mol.: 1 / Mutation: C347S, C723S, C839S Source method: isolated from a genetically manipulated source Source: (gene. exp.) Enterobacteria phage T7 (virus) / Genus: T7-like viruses / Gene: T7 / Plasmid: T7 / Species (production host): Escherichia coli / Gene (production host): T7 / Production host: Escherichia coli BL21 (bacteria) / Strain (production host): BL21 / References: UniProt: P00573, DNA-directed RNA polymerase |
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#2: Protein | Mass: 17007.309 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) Enterobacteria phage T7 (virus) / Genus: T7-like viruses / Gene: T7 / Plasmid: T7 / Species (production host): Escherichia coli / Gene (production host): T7 / Production host: Escherichia coli BL21 (bacteria) / Strain (production host): BL21 References: UniProt: P00806, N-acetylmuramoyl-L-alanine amidase |
#3: Chemical | ChemComp-HG / |
-Experimental details
-Experiment
Experiment | Method: X-RAY DIFFRACTION / Number of used crystals: 2 |
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-Sample preparation
Crystal | Density Matthews: 3.51 Å3/Da / Density % sol: 69 % | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Crystal grow | pH: 7 / Details: pH 7.0 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Crystal | *PLUS | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Crystal grow | *PLUS Temperature: 12 ℃ / Method: vapor diffusion, sitting drop / Details: Jeruzalmi, D., (1997) J. Mol. Biol., 274, 748. | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Components of the solutions | *PLUS
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-Data collection
Diffraction | Mean temperature: 100 K |
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Diffraction source | Source: SYNCHROTRON / Site: CHESS / Beamline: F2 / Wavelength: 0.908 |
Detector | Type: FUJI / Detector: IMAGE PLATE / Date: Oct 1, 1993 / Details: MIRROR |
Radiation | Monochromator: SI(111) / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 0.908 Å / Relative weight: 1 |
Reflection | Resolution: 2.8→100 Å / Num. obs: 38310 / % possible obs: 93.9 % / Observed criterion σ(I): 2 / Redundancy: 2.2 % / Rmerge(I) obs: 0.096 / Rsym value: 0.096 / Net I/σ(I): 13.37 |
Reflection shell | Resolution: 2.8→2.9 Å / Redundancy: 2 % / Rmerge(I) obs: 0.44 / Mean I/σ(I) obs: 2 / Rsym value: 0.44 / % possible all: 76.8 |
-Processing
Software |
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Refinement | Method to determine structure: MIR / Resolution: 2.8→30 Å / Cross valid method: THROUGHOUT / σ(F): 2
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Refinement step | Cycle: LAST / Resolution: 2.8→30 Å
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Software | *PLUS Name: CNS / Classification: refinement | ||||||||||||||||||||
Refine LS restraints | *PLUS
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