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- EMDB-10861: Cryo-EM structure of Tetrahymena thermophila mitochondrial ATP sy... -
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Basic information
Entry | Database: EMDB / ID: EMD-10861 | ||||||||||||
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Title | Cryo-EM structure of Tetrahymena thermophila mitochondrial ATP synthase - F1Fo tetramer | ||||||||||||
![]() | Local-resolution filtered full map of T. thermophila ATP synthase tetramer, Fo-subcomplexes masked | ||||||||||||
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![]() | mitochondria / ATP synthase / F1Fo tetramer / MEMBRANE PROTEIN | ||||||||||||
Function / homology | ![]() : / sulfide oxidation, using sulfide:quinone oxidoreductase / sulfide:quinone oxidoreductase activity / thylakoid / carboxylic ester hydrolase activity / proton transmembrane transporter activity / proton motive force-driven ATP synthesis / proton-transporting two-sector ATPase complex, proton-transporting domain / proton motive force-driven mitochondrial ATP synthesis / H+-transporting two-sector ATPase ...: / sulfide oxidation, using sulfide:quinone oxidoreductase / sulfide:quinone oxidoreductase activity / thylakoid / carboxylic ester hydrolase activity / proton transmembrane transporter activity / proton motive force-driven ATP synthesis / proton-transporting two-sector ATPase complex, proton-transporting domain / proton motive force-driven mitochondrial ATP synthesis / H+-transporting two-sector ATPase / proton-transporting ATP synthase complex / proton-transporting ATP synthase activity, rotational mechanism / FAD binding / ADP binding / hydrolase activity / mitochondrial inner membrane / lipid binding / ATP hydrolysis activity / mitochondrion / ATP binding / membrane Similarity search - Function | ||||||||||||
Biological species | ![]() ![]() | ||||||||||||
Method | single particle reconstruction / cryo EM / Resolution: 3.1 Å | ||||||||||||
![]() | Kock Flygaard R / Muhleip A | ||||||||||||
Funding support | ![]()
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![]() | ![]() Title: Type III ATP synthase is a symmetry-deviated dimer that induces membrane curvature through tetramerization. Authors: Flygaard RK / Muhleip A / Tobiasson V / Amunts A | ||||||||||||
History |
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Structure visualization
Movie |
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Structure viewer | EM map: ![]() ![]() ![]() |
Supplemental images |
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Downloads & links
-EMDB archive
Map data | ![]() | 468.7 MB | ![]() | |
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Header (meta data) | ![]() ![]() | 52.6 KB 52.6 KB | Display Display | ![]() |
FSC (resolution estimation) | ![]() | 21.2 KB | Display | ![]() |
Images | ![]() | 62.4 KB | ||
Masks | ![]() | 824 MB | ![]() | |
Filedesc metadata | ![]() | 12.9 KB | ||
Others | ![]() ![]() | 665.7 MB 665.6 MB | ||
Archive directory | ![]() ![]() | HTTPS FTP |
-Validation report
Summary document | ![]() | 1 MB | Display | ![]() |
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Full document | ![]() | 1 MB | Display | |
Data in XML | ![]() | 28 KB | Display | |
Data in CIF | ![]() | 36.9 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Related structure data | ![]() 6ynzMC ![]() 6ynvC ![]() 6ynwC ![]() 6ynxC ![]() 6ynyC ![]() 6yo0C M: atomic model generated by this map C: citing same article ( |
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Similar structure data |
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Links
EMDB pages | ![]() ![]() |
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Related items in Molecule of the Month |
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Map
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Annotation | Local-resolution filtered full map of T. thermophila ATP synthase tetramer, Fo-subcomplexes masked | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Projections & slices | Image control
Images are generated by Spider. | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Voxel size | X=Y=Z: 0.83 Å | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Density |
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Symmetry | Space group: 1 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Details | EMDB XML:
CCP4 map header:
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-Supplemental data
-Mask #1
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Projections & Slices |
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Density Histograms |
-Half map: Half-map 1
File | emd_10861_half_map_1.map | ||||||||||||
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Annotation | Half-map 1 | ||||||||||||
Projections & Slices |
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Density Histograms |
-Half map: Half-map 2
File | emd_10861_half_map_2.map | ||||||||||||
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Annotation | Half-map 2 | ||||||||||||
Projections & Slices |
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Density Histograms |
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Sample components
+Entire : Mitochondrial ATP synthase, F1Fo tetramer
+Supramolecule #1: Mitochondrial ATP synthase, F1Fo tetramer
+Macromolecule #1: Ymf66
+Macromolecule #2: subunit b
+Macromolecule #3: subunit d
+Macromolecule #4: subunit f
+Macromolecule #5: subunit i/j
+Macromolecule #6: subunit k
+Macromolecule #7: Ymf56
+Macromolecule #8: ATPTT3
+Macromolecule #9: ATPTT4
+Macromolecule #10: ATPTT5
+Macromolecule #11: ATPTT6
+Macromolecule #12: ATPTT7
+Macromolecule #13: ATPTT8
+Macromolecule #14: ATPTT9
+Macromolecule #15: ATPTT10
+Macromolecule #16: ATPTT11
+Macromolecule #17: ATPTT12
+Macromolecule #18: ATPTT13
+Macromolecule #19: ATPTT1
+Macromolecule #20: Inhibitor of F1 (IF1)
+Macromolecule #21: ATPTT2
+Macromolecule #22: Oligomycin sensitivity-conferring protein (OSCP)
+Macromolecule #23: ATP synthase subunit gamma
+Macromolecule #24: ATP synthase subunit alpha
+Macromolecule #25: ATP synthase subunit beta
+Macromolecule #26: ATP synthase F0 subunit 9
+Macromolecule #27: subunit delta
+Macromolecule #28: subunit epsilon
+Macromolecule #29: CARDIOLIPIN
+Macromolecule #30: 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
+Macromolecule #31: PHOSPHATE ION
+Macromolecule #32: Ubiquinone-8
+Macromolecule #33: ADENOSINE-5'-TRIPHOSPHATE
+Macromolecule #34: MAGNESIUM ION
+Macromolecule #35: 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine
+Macromolecule #36: NICOTINAMIDE-ADENINE-DINUCLEOTIDE
+Macromolecule #37: ADENOSINE-5'-DIPHOSPHATE
-Experimental details
-Structure determination
Method | cryo EM |
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![]() | single particle reconstruction |
Aggregation state | particle |
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Sample preparation
Concentration | 0.75 mg/mL |
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Buffer | pH: 7.5 |
Grid | Model: Quantifoil R2/2 / Material: COPPER / Mesh: 300 |
Vitrification | Cryogen name: ETHANE / Instrument: FEI VITROBOT MARK IV |
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Electron microscopy
Microscope | FEI TITAN KRIOS |
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Specialist optics | Energy filter - Name: GIF Quantum LS / Energy filter - Slit width: 20 eV |
Image recording | Film or detector model: GATAN K2 QUANTUM (4k x 4k) / Detector mode: COUNTING / Average electron dose: 30.9 e/Å2 |
Electron beam | Acceleration voltage: 300 kV / Electron source: ![]() |
Electron optics | Illumination mode: FLOOD BEAM / Imaging mode: BRIGHT FIELD / Nominal magnification: 165000 |
Experimental equipment | ![]() Model: Titan Krios / Image courtesy: FEI Company |