EMDB/PDB/SASBDBから引用されている文献のデータベース

キーワード
構造解析手法	All X線回折 NMR 電子顕微鏡小角散乱中性子線回折線維回折粉末回折赤外分光 EPR FRET 理論モデルハイブリッド
著者・登録者
ジャーナル
IF	>30 >20 >10 >5 all

タイトル	Crystal Structure Analysis of DNA Uridine Endonuclease Mth212 Bound to DNA
ジャーナル・号・ページ	J. Mol. Biol., Vol. 399, Page 604-617, Year 2010
掲載日	2009年1月26日 (構造データの登録日)
著者	Lakomek, K. / Dickmanns, A. / Ciirdaeva, E. / Schomacher, L. / Ficner, R.
リンク	J. Mol. Biol. / PubMed:20434457
手法	X線回折
解像度	1.23 - 3.1 Å
構造データ	PDB-3fzi: 1.9 Angstrom structure of the thermophilic exonuclease III homologue Mth0212 手法: X-RAY DIFFRACTION / 解像度: 1.9 Å PDB-3g00: Mth0212 in complex with a 9bp blunt end dsDNA at 1.7 Angstrom 手法: X-RAY DIFFRACTION / 解像度: 1.74 Å PDB-3g0a: Mth0212 with two bound manganese ions 手法: X-RAY DIFFRACTION / 解像度: 2.6 Å PDB-3g0r: Complex of Mth0212 and an 8bp dsDNA with distorted ends 手法: X-RAY DIFFRACTION / 解像度: 2.4 Å PDB-3g1k: Mth0212 (WT) crystallized in a monoclinic space group 手法: X-RAY DIFFRACTION / 解像度: 3.1 Å PDB-3g2c: Mth0212 in complex with a short ssDNA (CGTA) 手法: X-RAY DIFFRACTION / 解像度: 2.3 Å PDB-3g2d: Complex of Mth0212 and a 4 bp dsDNA with 3'-overhang 手法: X-RAY DIFFRACTION / 解像度: 2.3 Å PDB-3g38: The catalytically inactive mutant Mth0212 (D151N) in complex with an 8 bp dsDNA 手法: X-RAY DIFFRACTION / 解像度: 3.04 Å PDB-3g3c: Mth0212 (WT) in complex with a 6bp dsDNA containing a single one nucleotide long 3'-overhang 手法: X-RAY DIFFRACTION / 解像度: 3.04 Å PDB-3g3y: Mth0212 in complex with ssDNA in space group P32 手法: X-RAY DIFFRACTION / 解像度: 2.5 Å PDB-3g4t: Mth0212 (WT) in complex with a 7bp dsDNA 手法: X-RAY DIFFRACTION / 解像度: 2.64 Å PDB-3g8v: The rationally designed catalytically inactive mutant Mth0212(D151N) 手法: X-RAY DIFFRACTION / 解像度: 2.4 Å PDB-3g91: 1.2 Angstrom structure of the exonuclease III homologue Mth0212 手法: X-RAY DIFFRACTION / 解像度: 1.23 Å PDB-3ga6: Mth0212 in complex with two DNA helices 手法: X-RAY DIFFRACTION / 解像度: 1.898 Å
化合物	ChemComp-MG: Unknown entry / マグネシウムジカチオン ChemComp-HOH: WATER ChemComp-PO4: PHOSPHATE ION / ホスファ-ト ChemComp-GOL: GLYCEROL / グリセロ-ル ChemComp-MPD: (4S)-2-METHYL-2,4-PENTANEDIOL / (S)-2-メチル-2,4-ペンタンジオ-ル / 沈殿剤YM ChemComp-MN: Unknown entry ChemComp-PG4: TETRAETHYLENE GLYCOL / テトラエチレングリコ-ル / 沈殿剤YM ChemComp-NA: Unknown entry / ナトリウムカチオン ChemComp-MRD: (4R)-2-METHYLPENTANE-2,4-DIOL / (4R)-2-メチル-2,4-ペンタンジオ-ル / 沈殿剤YM ChemComp-PEG*: DI(HYDROXYETHYL)ETHER / ジエチレングリコ-ル
由来	methanothermobacter thermautotrophicus (古細菌)
キーワード	HYDROLASE / alpha/beta-sandwich / double-strand specific 3'-5' exonuclease / AP endonuclease / 2'-deoxyuridine endonuclease / HYDROLASE/DNA / protein-DNA complex / HYDROLASE-DNA COMPLEX / coordination of two manganese ions / magnesium-dependent double-strand specific 3'-5' exonuclease / single-stranded DNA / flipped nucleotide / PO4 / Mg2+ / dsDNA with 3'-overhang / 3'- phosphate moiety bound / double-stranded DNA / inorganic phosphate / 2'-desoxyuridine endonuclease / rationally designed catalytically inactive mutant / twin / disorder of DNA / 3'-5' exonuclease